data_1SAZ # _model_server_result.job_id lKIuEXJ_1ufW2l4Ww9de8Q _model_server_result.datetime_utc '2025-01-02 23:06:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1saz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":399}' # _entry.id 1SAZ # _exptl.entry_id 1SAZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 505.208 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1SAZ _cell.length_a 197.685 _cell.length_b 197.685 _cell.length_c 58.238 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SAZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 5 'crystal symmetry operation' 5_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 0 0 58.238 6 'crystal symmetry operation' 6_556 x,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 58.238 7 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 58.238 8 'crystal symmetry operation' 8_556 -y,-x,-z+1 0 -1 0 -1 0 0 0 0 -1 0 0 58.238 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 1 A MSE 1 1_555 A N PHE 2 A PHE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C ARG 23 A ARG 23 1_555 A N MSE 24 A MSE 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale3 A C MSE 24 A MSE 24 1_555 A N VAL 25 A VAL 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C LYS 26 A LYS 26 1_555 A N MSE 27 A MSE 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale5 A C MSE 27 A MSE 27 1_555 A N GLN 28 A GLN 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale6 A C LEU 91 A LEU 91 1_555 A N MSE 92 A MSE 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale7 A C MSE 92 A MSE 92 1_555 A N ILE 93 A ILE 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 A C GLU 134 A GLU 134 1_555 A N MSE 135 A MSE 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 A C MSE 135 A MSE 135 1_555 A N GLU 136 A GLU 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale10 A C ARG 167 A ARG 167 1_555 A N MSE 168 A MSE 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale11 A C MSE 168 A MSE 168 1_555 A N MSE 169 A MSE 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale12 A C MSE 169 A MSE 169 1_555 A N ASN 170 A ASN 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale13 A C GLU 175 A GLU 175 1_555 A N MSE 176 A MSE 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale14 A C MSE 176 A MSE 176 1_555 A N ASN 177 A ASN 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale15 A C HIS 182 A HIS 182 1_555 A N MSE 183 A MSE 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale16 A C MSE 183 A MSE 183 1_555 A N GLY 184 A GLY 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale17 A C GLU 236 A GLU 236 1_555 A N MSE 237 A MSE 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale18 A C MSE 237 A MSE 237 1_555 A N LYS 238 A LYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale19 A C ALA 276 A ALA 276 1_555 A N MSE 277 A MSE 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale20 A C MSE 277 A MSE 277 1_555 A N ALA 278 A ALA 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale21 A C LYS 287 A LYS 287 1_555 A N MSE 288 A MSE 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale22 A C MSE 288 A MSE 288 1_555 A N ALA 289 A ALA 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 A O SER 142 A SER 142 6_556 B NA NA . A NA 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc2 A O SER 215 A SER 215 1_555 B NA NA . A NA 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc3 A O THR 217 A THR 217 1_555 B NA NA . A NA 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? # _chem_comp.formula 'C11 H18 N5 O12 P3' _chem_comp.formula_weight 505.208 _chem_comp.id ACP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ACP doub 1 n n PG O2G ACP sing 2 n n PG O3G ACP sing 3 n n PG C3B ACP sing 4 n n O2G HOG2 ACP sing 5 n n O3G HOG3 ACP sing 6 n n PB O1B ACP doub 7 n n PB O2B ACP sing 8 n n PB C3B ACP sing 9 n n PB O3A ACP sing 10 n n O2B HOB2 ACP sing 11 n n C3B H3B1 ACP sing 12 n n C3B H3B2 ACP sing 13 n n PA O1A ACP doub 14 n n PA O2A ACP sing 15 n n PA O3A ACP sing 16 n n PA O5' ACP sing 17 n n O2A HOA2 ACP sing 18 n n O5' C5' ACP sing 19 n n C5' C4' ACP sing 20 n n C5' "H5'1" ACP sing 21 n n C5' "H5'2" ACP sing 22 n n C4' O4' ACP sing 23 n n C4' C3' ACP sing 24 n n C4' H4' ACP sing 25 n n O4' C1' ACP sing 26 n n C3' O3' ACP sing 27 n n C3' C2' ACP sing 28 n n C3' H3' ACP sing 29 n n O3' HO3' ACP sing 30 n n C2' O2' ACP sing 31 n n C2' C1' ACP sing 32 n n C2' H2' ACP sing 33 n n O2' HO2' ACP sing 34 n n C1' N9 ACP sing 35 n n C1' H1' ACP sing 36 n n N9 C8 ACP sing 37 n y N9 C4 ACP sing 38 n y C8 N7 ACP doub 39 n y C8 H8 ACP sing 40 n n N7 C5 ACP sing 41 n y C5 C6 ACP sing 42 n y C5 C4 ACP doub 43 n y C6 N6 ACP sing 44 n n C6 N1 ACP doub 45 n y N6 HN61 ACP sing 46 n n N6 HN62 ACP sing 47 n n N1 C2 ACP sing 48 n y C2 N3 ACP doub 49 n y C2 H2 ACP sing 50 n n N3 C4 ACP sing 51 n y # _atom_sites.entry_id 1SAZ _atom_sites.fract_transf_matrix[1][1] 0.005059 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005059 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017171 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 390 390 NA NA . C 3 ACP A 1 399 399 ACP ACP . D 4 FMT A 1 401 401 FMT FMT . E 4 FMT A 1 402 402 FMT FMT . F 4 FMT A 1 403 403 FMT FMT . G 4 FMT A 1 404 404 FMT FMT . H 5 HOH A 1 405 1 HOH HOH . H 5 HOH A 2 406 2 HOH HOH . H 5 HOH A 3 407 3 HOH HOH . H 5 HOH A 4 408 4 HOH HOH . H 5 HOH A 5 409 5 HOH HOH . H 5 HOH A 6 410 6 HOH HOH . H 5 HOH A 7 411 7 HOH HOH . H 5 HOH A 8 412 8 HOH HOH . H 5 HOH A 9 413 9 HOH HOH . H 5 HOH A 10 414 10 HOH HOH . H 5 HOH A 11 415 11 HOH HOH . H 5 HOH A 12 416 12 HOH HOH . H 5 HOH A 13 417 13 HOH HOH . H 5 HOH A 14 418 14 HOH HOH . H 5 HOH A 15 419 15 HOH HOH . H 5 HOH A 16 420 16 HOH HOH . H 5 HOH A 17 421 17 HOH HOH . H 5 HOH A 18 422 18 HOH HOH . H 5 HOH A 19 423 19 HOH HOH . H 5 HOH A 20 424 20 HOH HOH . H 5 HOH A 21 425 21 HOH HOH . H 5 HOH A 22 426 22 HOH HOH . H 5 HOH A 23 427 23 HOH HOH . H 5 HOH A 24 428 24 HOH HOH . H 5 HOH A 25 429 25 HOH HOH . H 5 HOH A 26 430 26 HOH HOH . H 5 HOH A 27 431 27 HOH HOH . H 5 HOH A 28 432 28 HOH HOH . H 5 HOH A 29 433 29 HOH HOH . H 5 HOH A 30 434 30 HOH HOH . H 5 HOH A 31 435 31 HOH HOH . H 5 HOH A 32 436 32 HOH HOH . H 5 HOH A 33 437 33 HOH HOH . H 5 HOH A 34 438 34 HOH HOH . H 5 HOH A 35 439 35 HOH HOH . H 5 HOH A 36 440 36 HOH HOH . H 5 HOH A 37 441 37 HOH HOH . H 5 HOH A 38 442 38 HOH HOH . H 5 HOH A 39 443 39 HOH HOH . H 5 HOH A 40 444 40 HOH HOH . H 5 HOH A 41 445 41 HOH HOH . H 5 HOH A 42 446 42 HOH HOH . H 5 HOH A 43 447 43 HOH HOH . H 5 HOH A 44 448 44 HOH HOH . H 5 HOH A 45 449 45 HOH HOH . H 5 HOH A 46 450 46 HOH HOH . H 5 HOH A 47 451 47 HOH HOH . H 5 HOH A 48 452 48 HOH HOH . H 5 HOH A 49 453 49 HOH HOH . H 5 HOH A 50 454 50 HOH HOH . H 5 HOH A 51 455 51 HOH HOH . H 5 HOH A 52 456 52 HOH HOH . H 5 HOH A 53 457 53 HOH HOH . H 5 HOH A 54 458 54 HOH HOH . H 5 HOH A 55 459 55 HOH HOH . H 5 HOH A 56 460 56 HOH HOH . H 5 HOH A 57 461 57 HOH HOH . H 5 HOH A 58 462 58 HOH HOH . H 5 HOH A 59 463 59 HOH HOH . H 5 HOH A 60 464 60 HOH HOH . H 5 HOH A 61 465 61 HOH HOH . H 5 HOH A 62 466 62 HOH HOH . H 5 HOH A 63 467 63 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ACP . . . C 3 44.253 19.962 27.137 1 108.4 ? PG ACP 399 A 1 HETATM 2 O O1G ACP . . . C 3 45.047 18.739 27.574 1 107.78 ? O1G ACP 399 A 1 HETATM 3 O O2G ACP . . . C 3 42.836 19.578 26.871 1 107.68 ? O2G ACP 399 A 1 HETATM 4 O O3G ACP . . . C 3 44.398 21.126 28.123 1 108.65 ? O3G ACP 399 A 1 HETATM 5 P PB ACP . . . C 3 44.138 22.016 25.103 1 101.93 ? PB ACP 399 A 1 HETATM 6 O O1B ACP . . . C 3 45.03 22.465 23.986 1 101.09 ? O1B ACP 399 A 1 HETATM 7 O O2B ACP . . . C 3 43.789 23.162 25.95 1 101.3 ? O2B ACP 399 A 1 HETATM 8 C C3B ACP . . . C 3 44.983 20.771 25.774 1 104.61 ? C3B ACP 399 A 1 HETATM 9 P PA ACP . . . C 3 41.199 22.162 24.151 1 87.87 ? PA ACP 399 A 1 HETATM 10 O O1A ACP . . . C 3 41.107 23.661 24.302 1 88.25 ? O1A ACP 399 A 1 HETATM 11 O O2A ACP . . . C 3 40.345 21.401 25.113 1 87.19 ? O2A ACP 399 A 1 HETATM 12 O O3A ACP . . . C 3 42.722 21.684 24.302 1 94.78 ? O3A ACP 399 A 1 HETATM 13 O O5' ACP . . . C 3 41.019 21.984 22.56 1 83.63 ? O5' ACP 399 A 1 HETATM 14 C C5' ACP . . . C 3 41.065 20.606 22.134 1 74.17 ? C5' ACP 399 A 1 HETATM 15 C C4' ACP . . . C 3 40.936 19.984 20.702 1 69.15 ? C4' ACP 399 A 1 HETATM 16 O O4' ACP . . . C 3 39.697 20.213 20.102 1 64.79 ? O4' ACP 399 A 1 HETATM 17 C C3' ACP . . . C 3 41.981 20.708 19.939 1 66.62 ? C3' ACP 399 A 1 HETATM 18 O O3' ACP . . . C 3 43.174 19.964 19.987 1 67.32 ? O3' ACP 399 A 1 HETATM 19 C C2' ACP . . . C 3 41.352 20.932 18.537 1 64.2 ? C2' ACP 399 A 1 HETATM 20 O O2' ACP . . . C 3 41.912 20.033 17.602 1 64 ? O2' ACP 399 A 1 HETATM 21 C C1' ACP . . . C 3 39.919 20.739 18.806 1 62.32 ? C1' ACP 399 A 1 HETATM 22 N N9 ACP . . . C 3 38.992 21.935 18.634 1 57.64 ? N9 ACP 399 A 1 HETATM 23 C C8 ACP . . . C 3 38.909 23.136 19.252 1 56.47 ? C8 ACP 399 A 1 HETATM 24 N N7 ACP . . . C 3 37.937 23.944 18.815 1 55.96 ? N7 ACP 399 A 1 HETATM 25 C C5 ACP . . . C 3 37.37 23.204 17.858 1 54.71 ? C5 ACP 399 A 1 HETATM 26 C C6 ACP . . . C 3 36.261 23.382 16.928 1 55.24 ? C6 ACP 399 A 1 HETATM 27 N N6 ACP . . . C 3 35.524 24.528 16.901 1 56.69 ? N6 ACP 399 A 1 HETATM 28 N N1 ACP . . . C 3 35.909 22.381 16.025 1 54.53 ? N1 ACP 399 A 1 HETATM 29 C C2 ACP . . . C 3 36.609 21.208 16.002 1 54.23 ? C2 ACP 399 A 1 HETATM 30 N N3 ACP . . . C 3 37.659 20.955 16.829 1 53.45 ? N3 ACP 399 A 1 HETATM 31 C C4 ACP . . . C 3 37.994 21.953 17.717 1 55.05 ? C4 ACP 399 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 407 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 31 #