data_1SB9 # _model_server_result.job_id M7XLuGLtK3gwNRz57mw3Iw _model_server_result.datetime_utc '2024-11-28 03:12:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1sb9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":342}' # _entry.id 1SB9 # _exptl.entry_id 1SB9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1SB9 _cell.length_a 60.989 _cell.length_b 95.704 _cell.length_c 141.165 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SB9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_556 x,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 141.165 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 1SB9 _atom_sites.fract_transf_matrix[1][1] 0.016396 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010449 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007084 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 342 342 NAD NAD . C 3 UPG A 1 343 343 UPG UPG . D 4 HOH A 1 344 1 HOH WAT . D 4 HOH A 2 345 2 HOH WAT . D 4 HOH A 3 346 3 HOH WAT . D 4 HOH A 4 347 4 HOH WAT . D 4 HOH A 5 348 5 HOH WAT . D 4 HOH A 6 349 6 HOH WAT . D 4 HOH A 7 350 7 HOH WAT . D 4 HOH A 8 351 8 HOH WAT . D 4 HOH A 9 352 9 HOH WAT . D 4 HOH A 10 353 10 HOH WAT . D 4 HOH A 11 354 11 HOH WAT . D 4 HOH A 12 355 12 HOH WAT . D 4 HOH A 13 356 13 HOH WAT . D 4 HOH A 14 357 14 HOH WAT . D 4 HOH A 15 358 15 HOH WAT . D 4 HOH A 16 359 16 HOH WAT . D 4 HOH A 17 360 17 HOH WAT . D 4 HOH A 18 361 18 HOH WAT . D 4 HOH A 19 362 19 HOH WAT . D 4 HOH A 20 363 20 HOH WAT . D 4 HOH A 21 364 21 HOH WAT . D 4 HOH A 22 365 22 HOH WAT . D 4 HOH A 23 366 23 HOH WAT . D 4 HOH A 24 367 24 HOH WAT . D 4 HOH A 25 368 25 HOH WAT . D 4 HOH A 26 369 26 HOH WAT . D 4 HOH A 27 370 27 HOH WAT . D 4 HOH A 28 371 28 HOH WAT . D 4 HOH A 29 372 29 HOH WAT . D 4 HOH A 30 373 30 HOH WAT . D 4 HOH A 31 374 31 HOH WAT . D 4 HOH A 32 375 32 HOH WAT . D 4 HOH A 33 376 33 HOH WAT . D 4 HOH A 34 377 34 HOH WAT . D 4 HOH A 35 378 35 HOH WAT . D 4 HOH A 36 379 36 HOH WAT . D 4 HOH A 37 380 37 HOH WAT . D 4 HOH A 38 381 38 HOH WAT . D 4 HOH A 39 382 39 HOH WAT . D 4 HOH A 40 383 40 HOH WAT . D 4 HOH A 41 384 41 HOH WAT . D 4 HOH A 42 385 42 HOH WAT . D 4 HOH A 43 386 43 HOH WAT . D 4 HOH A 44 387 44 HOH WAT . D 4 HOH A 45 388 45 HOH WAT . D 4 HOH A 46 389 46 HOH WAT . D 4 HOH A 47 390 47 HOH WAT . D 4 HOH A 48 391 48 HOH WAT . D 4 HOH A 49 392 49 HOH WAT . D 4 HOH A 50 393 50 HOH WAT . D 4 HOH A 51 394 51 HOH WAT . D 4 HOH A 52 395 52 HOH WAT . D 4 HOH A 53 396 53 HOH WAT . D 4 HOH A 54 397 54 HOH WAT . D 4 HOH A 55 398 55 HOH WAT . D 4 HOH A 56 399 56 HOH WAT . D 4 HOH A 57 400 57 HOH WAT . D 4 HOH A 58 401 58 HOH WAT . D 4 HOH A 59 402 59 HOH WAT . D 4 HOH A 60 403 60 HOH WAT . D 4 HOH A 61 404 61 HOH WAT . D 4 HOH A 62 405 62 HOH WAT . D 4 HOH A 63 406 63 HOH WAT . D 4 HOH A 64 407 64 HOH WAT . D 4 HOH A 65 408 66 HOH WAT . D 4 HOH A 66 409 67 HOH WAT . D 4 HOH A 67 410 68 HOH WAT . D 4 HOH A 68 411 70 HOH WAT . D 4 HOH A 69 412 71 HOH WAT . D 4 HOH A 70 413 73 HOH WAT . D 4 HOH A 71 414 75 HOH WAT . D 4 HOH A 72 415 76 HOH WAT . D 4 HOH A 73 416 77 HOH WAT . D 4 HOH A 74 417 78 HOH WAT . D 4 HOH A 75 418 79 HOH WAT . D 4 HOH A 76 419 80 HOH WAT . D 4 HOH A 77 420 81 HOH WAT . D 4 HOH A 78 421 82 HOH WAT . D 4 HOH A 79 422 83 HOH WAT . D 4 HOH A 80 423 84 HOH WAT . D 4 HOH A 81 424 85 HOH WAT . D 4 HOH A 82 425 86 HOH WAT . D 4 HOH A 83 426 87 HOH WAT . D 4 HOH A 84 427 89 HOH WAT . D 4 HOH A 85 428 90 HOH WAT . D 4 HOH A 86 429 91 HOH WAT . D 4 HOH A 87 430 92 HOH WAT . D 4 HOH A 88 431 93 HOH WAT . D 4 HOH A 89 432 94 HOH WAT . D 4 HOH A 90 433 95 HOH WAT . D 4 HOH A 91 434 96 HOH WAT . D 4 HOH A 92 435 97 HOH WAT . D 4 HOH A 93 436 98 HOH WAT . D 4 HOH A 94 437 99 HOH WAT . D 4 HOH A 95 438 101 HOH WAT . D 4 HOH A 96 439 103 HOH WAT . D 4 HOH A 97 440 104 HOH WAT . D 4 HOH A 98 441 105 HOH WAT . D 4 HOH A 99 442 108 HOH WAT . D 4 HOH A 100 443 109 HOH WAT . D 4 HOH A 101 444 110 HOH WAT . D 4 HOH A 102 445 111 HOH WAT . D 4 HOH A 103 446 112 HOH WAT . D 4 HOH A 104 447 113 HOH WAT . D 4 HOH A 105 448 114 HOH WAT . D 4 HOH A 106 449 115 HOH WAT . D 4 HOH A 107 450 118 HOH WAT . D 4 HOH A 108 451 119 HOH WAT . D 4 HOH A 109 452 120 HOH WAT . D 4 HOH A 110 453 121 HOH WAT . D 4 HOH A 111 454 122 HOH WAT . D 4 HOH A 112 455 123 HOH WAT . D 4 HOH A 113 456 124 HOH WAT . D 4 HOH A 114 457 125 HOH WAT . D 4 HOH A 115 458 126 HOH WAT . D 4 HOH A 116 459 129 HOH WAT . D 4 HOH A 117 460 130 HOH WAT . D 4 HOH A 118 461 131 HOH WAT . D 4 HOH A 119 462 132 HOH WAT . D 4 HOH A 120 463 134 HOH WAT . D 4 HOH A 121 464 135 HOH WAT . D 4 HOH A 122 465 137 HOH WAT . D 4 HOH A 123 466 138 HOH WAT . D 4 HOH A 124 467 139 HOH WAT . D 4 HOH A 125 468 140 HOH WAT . D 4 HOH A 126 469 141 HOH WAT . D 4 HOH A 127 470 142 HOH WAT . D 4 HOH A 128 471 143 HOH WAT . D 4 HOH A 129 472 144 HOH WAT . D 4 HOH A 130 473 145 HOH WAT . D 4 HOH A 131 474 146 HOH WAT . D 4 HOH A 132 475 147 HOH WAT . D 4 HOH A 133 476 148 HOH WAT . D 4 HOH A 134 477 149 HOH WAT . D 4 HOH A 135 478 156 HOH WAT . D 4 HOH A 136 479 157 HOH WAT . D 4 HOH A 137 480 158 HOH WAT . D 4 HOH A 138 481 159 HOH WAT . D 4 HOH A 139 482 160 HOH WAT . D 4 HOH A 140 483 161 HOH WAT . D 4 HOH A 141 484 163 HOH WAT . D 4 HOH A 142 485 164 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . B 2 50.182 -1.788 90.189 1 25.15 ? PA NAD 342 A 1 HETATM 2 O O1A NAD . . . B 2 50.421 -1.881 91.778 1 29.85 ? O1A NAD 342 A 1 HETATM 3 O O2A NAD . . . B 2 50.935 -0.563 89.466 1 28.94 ? O2A NAD 342 A 1 HETATM 4 O O5B NAD . . . B 2 50.611 -3.131 89.375 1 28.94 ? O5B NAD 342 A 1 HETATM 5 C C5B NAD . . . B 2 51.038 -3.003 88.041 1 25.64 ? C5B NAD 342 A 1 HETATM 6 C C4B NAD . . . B 2 52.345 -3.755 87.931 1 25.35 ? C4B NAD 342 A 1 HETATM 7 O O4B NAD . . . B 2 52.644 -3.965 86.547 1 25.81 ? O4B NAD 342 A 1 HETATM 8 C C3B NAD . . . B 2 53.473 -2.957 88.521 1 25.33 ? C3B NAD 342 A 1 HETATM 9 O O3B NAD . . . B 2 54.104 -3.782 89.503 1 20.58 ? O3B NAD 342 A 1 HETATM 10 C C2B NAD . . . B 2 54.384 -2.677 87.383 1 24.31 ? C2B NAD 342 A 1 HETATM 11 O O2B NAD . . . B 2 55.739 -2.792 87.796 1 28.47 ? O2B NAD 342 A 1 HETATM 12 C C1B NAD . . . B 2 54.033 -3.705 86.362 1 25.11 ? C1B NAD 342 A 1 HETATM 13 N N9A NAD . . . B 2 54.297 -3.252 84.968 1 25.29 ? N9A NAD 342 A 1 HETATM 14 C C8A NAD . . . B 2 53.821 -2.11 84.429 1 23.44 ? C8A NAD 342 A 1 HETATM 15 N N7A NAD . . . B 2 54.249 -2.025 83.161 1 23.19 ? N7A NAD 342 A 1 HETATM 16 C C5A NAD . . . B 2 55.015 -3.201 82.985 1 24.9 ? C5A NAD 342 A 1 HETATM 17 C C6A NAD . . . B 2 55.719 -3.638 81.809 1 25.95 ? C6A NAD 342 A 1 HETATM 18 N N6A NAD . . . B 2 55.676 -2.853 80.688 1 23.27 ? N6A NAD 342 A 1 HETATM 19 N N1A NAD . . . B 2 56.403 -4.834 81.887 1 27.63 ? N1A NAD 342 A 1 HETATM 20 C C2A NAD . . . B 2 56.359 -5.526 83.093 1 26.33 ? C2A NAD 342 A 1 HETATM 21 N N3A NAD . . . B 2 55.715 -5.161 84.223 1 25.94 ? N3A NAD 342 A 1 HETATM 22 C C4A NAD . . . B 2 55.034 -3.957 84.128 1 26.5 ? C4A NAD 342 A 1 HETATM 23 O O3 NAD . . . B 2 48.65 -1.601 89.791 1 25 ? O3 NAD 342 A 1 HETATM 24 P PN NAD . . . B 2 47.411 -2.532 90.183 1 21.35 ? PN NAD 342 A 1 HETATM 25 O O1N NAD . . . B 2 47.811 -3.844 91.023 1 20.05 ? O1N NAD 342 A 1 HETATM 26 O O2N NAD . . . B 2 46.413 -1.517 90.946 1 25.74 ? O2N NAD 342 A 1 HETATM 27 O O5D NAD . . . B 2 46.678 -2.812 88.784 1 25.26 ? O5D NAD 342 A 1 HETATM 28 C C5D NAD . . . B 2 46.925 -4.043 88.16 1 25.76 ? C5D NAD 342 A 1 HETATM 29 C C4D NAD . . . B 2 46.047 -4.109 86.931 1 30.36 ? C4D NAD 342 A 1 HETATM 30 O O4D NAD . . . B 2 44.683 -3.935 87.331 1 31.83 ? O4D NAD 342 A 1 HETATM 31 C C3D NAD . . . B 2 46.377 -3.001 85.964 1 32.34 ? C3D NAD 342 A 1 HETATM 32 O O3D NAD . . . B 2 46.431 -3.606 84.669 1 33.13 ? O3D NAD 342 A 1 HETATM 33 C C2D NAD . . . B 2 45.233 -2.064 86.058 1 34.1 ? C2D NAD 342 A 1 HETATM 34 O O2D NAD . . . B 2 44.993 -1.447 84.795 1 35.38 ? O2D NAD 342 A 1 HETATM 35 C C1D NAD . . . B 2 44.102 -2.94 86.48 1 35.36 ? C1D NAD 342 A 1 HETATM 36 N N1N NAD . . . B 2 43.028 -2.193 87.18 1 37.5 ? N1N NAD 342 A 1 HETATM 37 C C2N NAD . . . B 2 43.252 -1.842 88.497 1 40.05 ? C2N NAD 342 A 1 HETATM 38 C C3N NAD . . . B 2 42.198 -1.145 89.127 1 43.02 ? C3N NAD 342 A 1 HETATM 39 C C7N NAD . . . B 2 42.319 -0.71 90.556 1 43.82 ? C7N NAD 342 A 1 HETATM 40 O O7N NAD . . . B 2 41.388 -0.246 91.192 1 46.21 ? O7N NAD 342 A 1 HETATM 41 N N7N NAD . . . B 2 43.57 -0.885 91.096 1 42.59 ? N7N NAD 342 A 1 HETATM 42 C C4N NAD . . . B 2 40.995 -0.85 88.396 1 43.61 ? C4N NAD 342 A 1 HETATM 43 C C5N NAD . . . B 2 40.855 -1.255 87.029 1 41.62 ? C5N NAD 342 A 1 HETATM 44 C C6N NAD . . . B 2 41.911 -1.949 86.412 1 39.48 ? C6N NAD 342 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #