data_1SBG # _model_server_result.job_id aO7NhHnMWL8dPIfoh0DTvA _model_server_result.datetime_utc '2024-10-16 10:33:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1sbg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":400}' # _entry.id 1SBG # _exptl.entry_id 1SBG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 534.69 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(2R,4S,5S,1'S)-2-PHENYLMETHYL-4-HYDROXY-5-(TERT-BUTOXYCARBONYL)AMINO-6-PHENYL HEXANOYL-N-(1'-IMIDAZO-2-YL)-2'-METHYLPROPANAMIDE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1SBG _cell.length_a 63.4 _cell.length_b 63.4 _cell.length_c 83.7 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SBG _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C31 H42 N4 O4' _chem_comp.formula_weight 534.69 _chem_comp.id IM1 _chem_comp.mon_nstd_flag . _chem_comp.name "(2R,4S,5S,1'S)-2-PHENYLMETHYL-4-HYDROXY-5-(TERT-BUTOXYCARBONYL)AMINO-6-PHENYL HEXANOYL-N-(1'-IMIDAZO-2-YL)-2'-METHYLPROPANAMIDE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 IM1 sing 173 n n C1 C3 IM1 sing 174 n n C1 C4 IM1 sing 175 n n C1 O5 IM1 sing 176 n n C2 H1 IM1 sing 177 n n C2 H2 IM1 sing 178 n n C2 H3 IM1 sing 179 n n C3 H4 IM1 sing 180 n n C3 H5 IM1 sing 181 n n C3 H6 IM1 sing 182 n n C4 H7 IM1 sing 183 n n C4 H8 IM1 sing 184 n n C4 H9 IM1 sing 185 n n O5 C6 IM1 sing 186 n n C6 O7 IM1 doub 187 n n C6 N8 IM1 sing 188 n n N8 C9 IM1 sing 189 n n N8 H10 IM1 sing 190 n n C9 C10 IM1 sing 191 n n C9 C17 IM1 sing 192 n n C9 H11 IM1 sing 193 n n C10 C11 IM1 sing 194 n n C10 H12 IM1 sing 195 n n C10 H13 IM1 sing 196 n n C11 C12 IM1 doub 197 n y C11 C16 IM1 sing 198 n y C12 C13 IM1 sing 199 n y C12 H14 IM1 sing 200 n n C13 C14 IM1 doub 201 n y C13 H15 IM1 sing 202 n n C14 C15 IM1 sing 203 n y C14 H16 IM1 sing 204 n n C15 C16 IM1 doub 205 n y C15 H17 IM1 sing 206 n n C16 H18 IM1 sing 207 n n C17 O18 IM1 sing 208 n n C17 C19 IM1 sing 209 n n C17 H19 IM1 sing 210 n n O18 H20 IM1 sing 211 n n C19 C20 IM1 sing 212 n n C19 H21 IM1 sing 213 n n C19 H22 IM1 sing 214 n n C20 C21 IM1 sing 215 n n C20 C28 IM1 sing 216 n n C20 H23 IM1 sing 217 n n C21 C22 IM1 sing 218 n n C21 H24 IM1 sing 219 n n C21 H25 IM1 sing 220 n n C22 C23 IM1 doub 221 n y C22 C27 IM1 sing 222 n y C23 C24 IM1 sing 223 n y C23 H26 IM1 sing 224 n n C24 C25 IM1 doub 225 n y C24 H27 IM1 sing 226 n n C25 C26 IM1 sing 227 n y C25 H28 IM1 sing 228 n n C26 C27 IM1 doub 229 n y C26 H29 IM1 sing 230 n n C27 H30 IM1 sing 231 n n C28 O29 IM1 doub 232 n n C28 N30 IM1 sing 233 n n N30 C31 IM1 sing 234 n n N30 H31 IM1 sing 235 n n C31 C32 IM1 sing 236 n n C31 C35 IM1 sing 237 n n C31 H32 IM1 sing 238 n n C32 C33 IM1 sing 239 n n C32 C34 IM1 sing 240 n n C32 H33 IM1 sing 241 n n C33 H34 IM1 sing 242 n n C33 H35 IM1 sing 243 n n C33 H36 IM1 sing 244 n n C34 H37 IM1 sing 245 n n C34 H38 IM1 sing 246 n n C34 H39 IM1 sing 247 n n C35 N36 IM1 sing 248 n y C35 N39 IM1 doub 249 n y N36 C37 IM1 sing 250 n y N36 H40 IM1 sing 251 n n C37 C38 IM1 doub 252 n y C37 H41 IM1 sing 253 n n C38 N39 IM1 sing 254 n y C38 H42 IM1 sing 255 n n # _atom_sites.entry_id 1SBG _atom_sites.fract_transf_matrix[1][1] 0.015773 _atom_sites.fract_transf_matrix[1][2] 0.009106 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018213 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011947 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IM1 A 1 400 400 IM1 IM1 . D 3 HOH A 1 500 500 HOH HOH . D 3 HOH A 2 501 501 HOH HOH . D 3 HOH A 3 502 502 HOH HOH . D 3 HOH A 4 504 504 HOH HOH . D 3 HOH A 5 505 505 HOH HOH . D 3 HOH A 6 506 506 HOH HOH . D 3 HOH A 7 507 507 HOH HOH . D 3 HOH A 8 509 509 HOH HOH . D 3 HOH A 9 514 514 HOH HOH . D 3 HOH A 10 522 522 HOH HOH . D 3 HOH A 11 523 523 HOH HOH . E 3 HOH B 1 503 503 HOH HOH . E 3 HOH B 2 508 508 HOH HOH . E 3 HOH B 3 510 510 HOH HOH . E 3 HOH B 4 511 511 HOH HOH . E 3 HOH B 5 512 512 HOH HOH . E 3 HOH B 6 513 513 HOH HOH . E 3 HOH B 7 515 515 HOH HOH . E 3 HOH B 8 516 516 HOH HOH . E 3 HOH B 9 517 517 HOH HOH . E 3 HOH B 10 518 518 HOH HOH . E 3 HOH B 11 519 519 HOH HOH . E 3 HOH B 12 520 520 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IM1 . . . C 2 -9.377 16.132 32.929 1 16.77 ? C1 IM1 400 A 1 HETATM 2 C C2 IM1 . . . C 2 -8.194 15.227 33.247 1 18.04 ? C2 IM1 400 A 1 HETATM 3 C C3 IM1 . . . C 2 -8.803 17.384 32.315 1 15.31 ? C3 IM1 400 A 1 HETATM 4 C C4 IM1 . . . C 2 -9.955 16.417 34.303 1 16.42 ? C4 IM1 400 A 1 HETATM 5 O O5 IM1 . . . C 2 -10.369 15.562 32.109 1 14.88 ? O5 IM1 400 A 1 HETATM 6 C C6 IM1 . . . C 2 -10.341 15.574 30.698 1 18.15 ? C6 IM1 400 A 1 HETATM 7 O O7 IM1 . . . C 2 -9.433 14.991 30.076 1 16.42 ? O7 IM1 400 A 1 HETATM 8 N N8 IM1 . . . C 2 -11.288 16.218 29.974 1 17.92 ? N8 IM1 400 A 1 HETATM 9 C C9 IM1 . . . C 2 -11.253 16.217 28.484 1 17.08 ? C9 IM1 400 A 1 HETATM 10 C C10 IM1 . . . C 2 -12.663 15.818 27.97 1 15.66 ? C10 IM1 400 A 1 HETATM 11 C C11 IM1 . . . C 2 -13.194 14.625 28.779 1 15.53 ? C11 IM1 400 A 1 HETATM 12 C C12 IM1 . . . C 2 -12.566 13.372 28.698 1 15.6 ? C12 IM1 400 A 1 HETATM 13 C C13 IM1 . . . C 2 -12.972 12.319 29.526 1 14.1 ? C13 IM1 400 A 1 HETATM 14 C C14 IM1 . . . C 2 -14.009 12.514 30.428 1 15.34 ? C14 IM1 400 A 1 HETATM 15 C C15 IM1 . . . C 2 -14.649 13.761 30.508 1 15.61 ? C15 IM1 400 A 1 HETATM 16 C C16 IM1 . . . C 2 -14.25 14.817 29.691 1 15.82 ? C16 IM1 400 A 1 HETATM 17 C C17 IM1 . . . C 2 -10.748 17.476 27.729 1 16.89 ? C17 IM1 400 A 1 HETATM 18 O O18 IM1 . . . C 2 -11.128 18.694 28.35 1 14.83 ? O18 IM1 400 A 1 HETATM 19 C C19 IM1 . . . C 2 -9.275 17.428 27.884 1 17.19 ? C19 IM1 400 A 1 HETATM 20 C C20 IM1 . . . C 2 -8.395 18.01 26.852 1 17.67 ? C20 IM1 400 A 1 HETATM 21 C C21 IM1 . . . C 2 -7.086 18.319 27.609 1 15.69 ? C21 IM1 400 A 1 HETATM 22 C C22 IM1 . . . C 2 -5.853 18.551 26.739 1 17.56 ? C22 IM1 400 A 1 HETATM 23 C C23 IM1 . . . C 2 -5.675 19.757 26.043 1 17.78 ? C23 IM1 400 A 1 HETATM 24 C C24 IM1 . . . C 2 -4.537 19.913 25.245 1 20.2 ? C24 IM1 400 A 1 HETATM 25 C C25 IM1 . . . C 2 -3.582 18.876 25.142 1 18.16 ? C25 IM1 400 A 1 HETATM 26 C C26 IM1 . . . C 2 -3.763 17.688 25.834 1 16.12 ? C26 IM1 400 A 1 HETATM 27 C C27 IM1 . . . C 2 -4.896 17.528 26.629 1 16.76 ? C27 IM1 400 A 1 HETATM 28 C C28 IM1 . . . C 2 -8.237 17.03 25.655 1 18.64 ? C28 IM1 400 A 1 HETATM 29 O O29 IM1 . . . C 2 -8.21 15.782 25.739 1 20.11 ? O29 IM1 400 A 1 HETATM 30 N N30 IM1 . . . C 2 -8.112 17.608 24.469 1 17.86 ? N30 IM1 400 A 1 HETATM 31 C C31 IM1 . . . C 2 -7.926 16.839 23.267 1 18.79 ? C31 IM1 400 A 1 HETATM 32 C C32 IM1 . . . C 2 -9.233 16.676 22.534 1 19.51 ? C32 IM1 400 A 1 HETATM 33 C C33 IM1 . . . C 2 -9.019 16.645 21.038 1 17.9 ? C33 IM1 400 A 1 HETATM 34 C C34 IM1 . . . C 2 -9.875 15.37 23.01 1 18.45 ? C34 IM1 400 A 1 HETATM 35 C C35 IM1 . . . C 2 -6.96 17.747 22.534 1 21.83 ? C35 IM1 400 A 1 HETATM 36 N N36 IM1 . . . C 2 -7.104 19.07 22.405 1 20.89 ? N36 IM1 400 A 1 HETATM 37 C C37 IM1 . . . C 2 -5.945 19.347 21.849 1 23.16 ? C37 IM1 400 A 1 HETATM 38 C C38 IM1 . . . C 2 -5.131 18.203 21.642 1 23.25 ? C38 IM1 400 A 1 HETATM 39 N N39 IM1 . . . C 2 -5.83 17.188 22.102 1 22.66 ? N39 IM1 400 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 39 #