data_1SC8
#
_model_server_result.job_id            BD4alqzOMkqy0xYvQGqhYQ 
_model_server_result.datetime_utc      '2024-11-04 20:09:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1sc8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":300}' 
#
_entry.id    1SC8 
#
_exptl.entry_id    1SC8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              447.508 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-(BENZYLSULFONYL)SERYL-N~1~-{4-[AMINO(IMINO)METHYL]BENZYL}GLYCINAMIDE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1SC8 
_cell.length_a            53.12 
_cell.length_b            55.09 
_cell.length_c            82.09 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1SC8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 46 U CYS 42 1_555 A SG CYS 62 U CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf2 A SG CYS 54 U CYS 50 1_555 A SG CYS 125 U CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf3 A SG CYS 150 U CYS 136 1_555 A SG CYS 219 U CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf4 A SG CYS 182 U CYS 168 1_555 A SG CYS 198 U CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf5 A SG CYS 209 U CYS 191 1_555 A SG CYS 237 U CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
#
_chem_comp.formula           'C20 H25 N5 O5 S' 
_chem_comp.formula_weight    447.508 
_chem_comp.id                2IN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-(BENZYLSULFONYL)SERYL-N~1~-{4-[AMINO(IMINO)METHYL]BENZYL}GLYCINAMIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N4 C18 2IN sing 1 n n 
N4 HN41 2IN sing 2 n n 
N4 HN42 2IN sing 3 n n 
N5 C18 2IN doub 4 n n 
N5 HN5 2IN sing 5 n n 
C18 C14 2IN sing 6 n n 
C14 C13 2IN doub 7 n y 
C14 C15 2IN sing 8 n y 
C13 C12 2IN sing 9 n y 
C13 H13 2IN sing 10 n n 
C12 C17 2IN doub 11 n y 
C12 H12 2IN sing 12 n n 
C17 C16 2IN sing 13 n y 
C17 C11 2IN sing 14 n n 
C16 C15 2IN doub 15 n y 
C16 H16 2IN sing 16 n n 
C15 H15 2IN sing 17 n n 
C11 N3 2IN sing 18 n n 
C11 H111 2IN sing 19 n n 
C11 H112 2IN sing 20 n n 
N3 C10 2IN sing 21 n n 
N3 HN3 2IN sing 22 n n 
C10 O5 2IN doub 23 n n 
C10 C8 2IN sing 24 n n 
C8 N2 2IN sing 25 n n 
C8 H81 2IN sing 26 n n 
C8 H82 2IN sing 27 n n 
N2 C7 2IN sing 28 n n 
N2 HN2 2IN sing 29 n n 
C7 O4 2IN doub 30 n n 
C7 C5 2IN sing 31 n n 
C5 C6 2IN sing 32 n n 
C5 N1 2IN sing 33 n n 
C5 H5 2IN sing 34 n n 
C6 O3 2IN sing 35 n n 
C6 H61 2IN sing 36 n n 
C6 H62 2IN sing 37 n n 
O3 HO3 2IN sing 38 n n 
N1 S1 2IN sing 39 n n 
N1 HN1 2IN sing 40 n n 
S1 O2 2IN doub 41 n n 
S1 O1 2IN doub 42 n n 
S1 C1 2IN sing 43 n n 
C1 C4 2IN sing 44 n n 
C1 H11 2IN sing 45 n n 
C1 H12A 2IN sing 46 n n 
C4 C3 2IN doub 47 n y 
C4 C19 2IN sing 48 n y 
C3 C2 2IN sing 49 n y 
C3 H3 2IN sing 50 n n 
C2 C21 2IN doub 51 n y 
C2 H2 2IN sing 52 n n 
C21 C20 2IN sing 53 n y 
C21 H21 2IN sing 54 n n 
C20 C19 2IN doub 55 n y 
C20 H20 2IN sing 56 n n 
C19 H19 2IN sing 57 n n 
#
_atom_sites.entry_id                     1SC8 
_atom_sites.fract_transf_matrix[1][1]    0.018825 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018152 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012182 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 U 1 401 401 SO4 SO4 . 
C 2 SO4 U 1 402 402 SO4 SO4 . 
D 3 2IN U 1 300 300 2IN 2IN . 
E 4 HOH U 1 403 2 HOH HOH . 
E 4 HOH U 2 404 3 HOH HOH . 
E 4 HOH U 3 405 4 HOH HOH . 
E 4 HOH U 4 406 6 HOH HOH . 
E 4 HOH U 5 407 7 HOH HOH . 
E 4 HOH U 6 408 8 HOH HOH . 
E 4 HOH U 7 409 9 HOH HOH . 
E 4 HOH U 8 410 10 HOH HOH . 
E 4 HOH U 9 411 11 HOH HOH . 
E 4 HOH U 10 412 12 HOH HOH . 
E 4 HOH U 11 413 13 HOH HOH . 
E 4 HOH U 12 414 14 HOH HOH . 
E 4 HOH U 13 415 15 HOH HOH . 
E 4 HOH U 14 416 16 HOH HOH . 
E 4 HOH U 15 417 17 HOH HOH . 
E 4 HOH U 16 418 18 HOH HOH . 
E 4 HOH U 17 419 19 HOH HOH . 
E 4 HOH U 18 420 20 HOH HOH . 
E 4 HOH U 19 421 23 HOH HOH . 
E 4 HOH U 20 422 24 HOH HOH . 
E 4 HOH U 21 423 25 HOH HOH . 
E 4 HOH U 22 424 27 HOH HOH . 
E 4 HOH U 23 425 29 HOH HOH . 
E 4 HOH U 24 426 30 HOH HOH . 
E 4 HOH U 25 427 31 HOH HOH . 
E 4 HOH U 26 428 32 HOH HOH . 
E 4 HOH U 27 429 33 HOH HOH . 
E 4 HOH U 28 430 34 HOH HOH . 
E 4 HOH U 29 431 36 HOH HOH . 
E 4 HOH U 30 432 37 HOH HOH . 
E 4 HOH U 31 433 39 HOH HOH . 
E 4 HOH U 32 434 40 HOH HOH . 
E 4 HOH U 33 435 41 HOH HOH . 
E 4 HOH U 34 436 42 HOH HOH . 
E 4 HOH U 35 437 43 HOH HOH . 
E 4 HOH U 36 438 44 HOH HOH . 
E 4 HOH U 37 439 46 HOH HOH . 
E 4 HOH U 38 440 47 HOH HOH . 
E 4 HOH U 39 441 48 HOH HOH . 
E 4 HOH U 40 442 50 HOH HOH . 
E 4 HOH U 41 443 51 HOH HOH . 
E 4 HOH U 42 444 52 HOH HOH . 
E 4 HOH U 43 445 53 HOH HOH . 
E 4 HOH U 44 446 54 HOH HOH . 
E 4 HOH U 45 447 55 HOH HOH . 
E 4 HOH U 46 448 56 HOH HOH . 
E 4 HOH U 47 449 57 HOH HOH . 
E 4 HOH U 48 450 58 HOH HOH . 
E 4 HOH U 49 451 59 HOH HOH . 
E 4 HOH U 50 452 60 HOH HOH . 
E 4 HOH U 51 453 61 HOH HOH . 
E 4 HOH U 52 454 62 HOH HOH . 
E 4 HOH U 53 455 63 HOH HOH . 
E 4 HOH U 54 456 64 HOH HOH . 
E 4 HOH U 55 457 66 HOH HOH . 
E 4 HOH U 56 458 67 HOH HOH . 
E 4 HOH U 57 459 68 HOH HOH . 
E 4 HOH U 58 460 69 HOH HOH . 
E 4 HOH U 59 461 70 HOH HOH . 
E 4 HOH U 60 462 71 HOH HOH . 
E 4 HOH U 61 463 72 HOH HOH . 
E 4 HOH U 62 464 74 HOH HOH . 
E 4 HOH U 63 465 75 HOH HOH . 
E 4 HOH U 64 466 78 HOH HOH . 
E 4 HOH U 65 467 79 HOH HOH . 
E 4 HOH U 66 468 80 HOH HOH . 
E 4 HOH U 67 469 81 HOH HOH . 
E 4 HOH U 68 470 82 HOH HOH . 
E 4 HOH U 69 471 83 HOH HOH . 
E 4 HOH U 70 472 84 HOH HOH . 
E 4 HOH U 71 473 85 HOH HOH . 
E 4 HOH U 72 474 86 HOH HOH . 
E 4 HOH U 73 475 87 HOH HOH . 
E 4 HOH U 74 476 88 HOH HOH . 
E 4 HOH U 75 477 90 HOH HOH . 
E 4 HOH U 76 478 92 HOH HOH . 
E 4 HOH U 77 479 93 HOH HOH . 
E 4 HOH U 78 480 94 HOH HOH . 
E 4 HOH U 79 481 96 HOH HOH . 
E 4 HOH U 80 482 97 HOH HOH . 
E 4 HOH U 81 483 99 HOH HOH . 
E 4 HOH U 82 484 100 HOH HOH . 
E 4 HOH U 83 485 101 HOH HOH . 
E 4 HOH U 84 486 102 HOH HOH . 
E 4 HOH U 85 487 103 HOH HOH . 
E 4 HOH U 86 488 106 HOH HOH . 
E 4 HOH U 87 489 110 HOH HOH . 
E 4 HOH U 88 490 111 HOH HOH . 
E 4 HOH U 89 491 113 HOH HOH . 
E 4 HOH U 90 492 114 HOH HOH . 
E 4 HOH U 91 493 117 HOH HOH . 
E 4 HOH U 92 494 118 HOH HOH . 
E 4 HOH U 93 495 119 HOH HOH . 
E 4 HOH U 94 496 120 HOH HOH . 
E 4 HOH U 95 497 122 HOH HOH . 
E 4 HOH U 96 498 124 HOH HOH . 
E 4 HOH U 97 499 126 HOH HOH . 
E 4 HOH U 98 500 128 HOH HOH . 
E 4 HOH U 99 501 129 HOH HOH . 
E 4 HOH U 100 502 130 HOH HOH . 
E 4 HOH U 101 503 131 HOH HOH . 
E 4 HOH U 102 504 132 HOH HOH . 
E 4 HOH U 103 505 135 HOH HOH . 
E 4 HOH U 104 506 136 HOH HOH . 
E 4 HOH U 105 507 137 HOH HOH . 
E 4 HOH U 106 508 139 HOH HOH . 
E 4 HOH U 107 509 140 HOH HOH . 
E 4 HOH U 108 510 141 HOH HOH . 
E 4 HOH U 109 511 144 HOH HOH . 
E 4 HOH U 110 512 145 HOH HOH . 
E 4 HOH U 111 513 147 HOH HOH . 
E 4 HOH U 112 514 148 HOH HOH . 
E 4 HOH U 113 515 155 HOH HOH . 
E 4 HOH U 114 516 158 HOH HOH . 
E 4 HOH U 115 517 161 HOH HOH . 
E 4 HOH U 116 518 162 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N4 2IN . . . D 3 33.255 2.967 27.908 1 14.37 ? N4 2IN 300 U 1 
HETATM 2 N N5 2IN . . . D 3 34.309 4.725 27.094 1 17.67 ? N5 2IN 300 U 1 
HETATM 3 C C18 2IN . . . D 3 33.179 4.28 27.65 1 16.67 ? C18 2IN 300 U 1 
HETATM 4 C C14 2IN . . . D 3 32.072 5.103 27.912 1 18.01 ? C14 2IN 300 U 1 
HETATM 5 C C13 2IN . . . D 3 31.961 6.491 27.434 1 17.54 ? C13 2IN 300 U 1 
HETATM 6 C C12 2IN . . . D 3 30.77 7.271 27.659 1 20.62 ? C12 2IN 300 U 1 
HETATM 7 C C17 2IN . . . D 3 29.697 6.686 28.456 1 23.01 ? C17 2IN 300 U 1 
HETATM 8 C C16 2IN . . . D 3 29.775 5.332 28.956 1 20.14 ? C16 2IN 300 U 1 
HETATM 9 C C15 2IN . . . D 3 30.95 4.565 28.692 1 18.45 ? C15 2IN 300 U 1 
HETATM 10 C C11 2IN . . . D 3 28.426 7.365 28.868 1 21.64 ? C11 2IN 300 U 1 
HETATM 11 N N3 2IN . . . D 3 28.448 8.274 29.93 1 22.68 ? N3 2IN 300 U 1 
HETATM 12 C C10 2IN . . . D 3 28.768 9.603 29.783 1 25.97 ? C10 2IN 300 U 1 
HETATM 13 O O5 2IN . . . D 3 29.005 10.213 28.745 1 29.88 ? O5 2IN 300 U 1 
HETATM 14 C C8 2IN . . . D 3 28.834 10.383 31.094 1 24.87 ? C8 2IN 300 U 1 
HETATM 15 N N2 2IN . . . D 3 30.04 11.174 31.028 1 25.31 ? N2 2IN 300 U 1 
HETATM 16 C C7 2IN . . . D 3 31.366 10.802 31.011 1 28.15 ? C7 2IN 300 U 1 
HETATM 17 O O4 2IN . . . D 3 31.789 9.678 31.116 1 30.66 ? O4 2IN 300 U 1 
HETATM 18 C C5 2IN . . . D 3 32.362 11.935 30.83 1 30.01 ? C5 2IN 300 U 1 
HETATM 19 C C6 2IN . . . D 3 33.123 12.324 32.12 1 30.81 ? C6 2IN 300 U 1 
HETATM 20 O O3 2IN . . . D 3 32.487 12.393 33.369 1 40.84 ? O3 2IN 300 U 1 
HETATM 21 N N1 2IN . . . D 3 33.5 11.671 29.987 1 29.48 ? N1 2IN 300 U 1 
HETATM 22 S S1 2IN . . . D 3 33.313 12.027 28.408 1 29.01 ? S1 2IN 300 U 1 
HETATM 23 O O2 2IN . . . D 3 32.9 13.383 28.215 1 32 ? O2 2IN 300 U 1 
HETATM 24 O O1 2IN . . . D 3 34.639 11.651 27.919 1 31.41 ? O1 2IN 300 U 1 
HETATM 25 C C1 2IN . . . D 3 32.197 10.965 27.493 1 31.08 ? C1 2IN 300 U 1 
HETATM 26 C C4 2IN . . . D 3 31.821 11.181 26.066 1 33.69 ? C4 2IN 300 U 1 
HETATM 27 C C3 2IN . . . D 3 30.831 12.215 25.754 1 36.24 ? C3 2IN 300 U 1 
HETATM 28 C C2 2IN . . . D 3 30.457 12.466 24.357 1 37.37 ? C2 2IN 300 U 1 
HETATM 29 C C21 2IN . . . D 3 31.04 11.662 23.275 1 38.51 ? C21 2IN 300 U 1 
HETATM 30 C C20 2IN . . . D 3 32.048 10.628 23.587 1 36.68 ? C20 2IN 300 U 1 
HETATM 31 C C19 2IN . . . D 3 32.416 10.385 24.988 1 34.36 ? C19 2IN 300 U 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#