data_1SCB # _model_server_result.job_id ZLO109_G_iSZ644PZyRGOg _model_server_result.datetime_utc '2024-11-08 14:45:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1scb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":414}' # _entry.id 1SCB # _exptl.entry_id 1SCB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 41.052 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ACETONITRILE _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1SCB _cell.length_a 77.1 _cell.length_b 55.4 _cell.length_c 53.6 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SCB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLN 2 A GLN 2 1_555 B CA CA . A CA 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc2 A OD2 ASP 41 A ASP 41 1_555 B CA CA . A CA 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.943 ? metalc ? metalc3 A OD1 ASP 41 A ASP 41 1_555 B CA CA . A CA 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc4 A O LEU 74 A LEU 75 1_555 B CA CA . A CA 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? metalc ? metalc5 A OD1 ASN 76 A ASN 77 1_555 B CA CA . A CA 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc6 A O THR 78 A THR 79 1_555 B CA CA . A CA 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc7 A O VAL 80 A VAL 81 1_555 B CA CA . A CA 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? # _chem_comp.formula 'C2 H3 N' _chem_comp.formula_weight 41.052 _chem_comp.id CCN _chem_comp.mon_nstd_flag . _chem_comp.name ACETONITRILE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C1 CCN trip 70 n n C1 C2 CCN sing 71 n n C2 H21 CCN sing 72 n n C2 H22 CCN sing 73 n n C2 H23 CCN sing 74 n n # _atom_sites.entry_id 1SCB _atom_sites.fract_transf_matrix[1][1] 0.01297 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018051 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018657 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 276 276 CA CA . C 3 CCN A 1 404 404 CCN CCN . D 3 CCN A 1 405 405 CCN CCN . E 3 CCN A 1 406 406 CCN CCN . F 3 CCN A 1 407 407 CCN CCN . G 3 CCN A 1 408 408 CCN CCN . H 3 CCN A 1 409 409 CCN CCN . I 3 CCN A 1 410 410 CCN CCN . J 3 CCN A 1 411 411 CCN CCN . K 3 CCN A 1 413 413 CCN CCN . L 3 CCN A 1 414 414 CCN CCN . M 3 CCN A 1 415 415 CCN CCN . N 3 CCN A 1 416 416 CCN CCN . O 4 HOH A 1 277 277 HOH HOH . O 4 HOH A 2 278 278 HOH HOH . O 4 HOH A 3 279 279 HOH HOH . O 4 HOH A 4 280 280 HOH HOH . O 4 HOH A 5 281 281 HOH HOH . O 4 HOH A 6 282 282 HOH HOH . O 4 HOH A 7 283 283 HOH HOH . O 4 HOH A 8 284 284 HOH HOH . O 4 HOH A 9 285 285 HOH HOH . O 4 HOH A 10 286 286 HOH HOH . O 4 HOH A 11 287 287 HOH HOH . O 4 HOH A 12 288 288 HOH HOH . O 4 HOH A 13 289 289 HOH HOH . O 4 HOH A 14 290 290 HOH HOH . O 4 HOH A 15 291 291 HOH HOH . O 4 HOH A 16 292 292 HOH HOH . O 4 HOH A 17 293 293 HOH HOH . O 4 HOH A 18 295 295 HOH HOH . O 4 HOH A 19 296 296 HOH HOH . O 4 HOH A 20 297 297 HOH HOH . O 4 HOH A 21 298 298 HOH HOH . O 4 HOH A 22 299 299 HOH HOH . O 4 HOH A 23 300 300 HOH HOH . O 4 HOH A 24 301 301 HOH HOH . O 4 HOH A 25 302 302 HOH HOH . O 4 HOH A 26 303 303 HOH HOH . O 4 HOH A 27 304 304 HOH HOH . O 4 HOH A 28 305 305 HOH HOH . O 4 HOH A 29 306 306 HOH HOH . O 4 HOH A 30 307 307 HOH HOH . O 4 HOH A 31 308 308 HOH HOH . O 4 HOH A 32 309 309 HOH HOH . O 4 HOH A 33 310 310 HOH HOH . O 4 HOH A 34 311 311 HOH HOH . O 4 HOH A 35 312 312 HOH HOH . O 4 HOH A 36 313 313 HOH HOH . O 4 HOH A 37 314 314 HOH HOH . O 4 HOH A 38 315 315 HOH HOH . O 4 HOH A 39 316 316 HOH HOH . O 4 HOH A 40 317 317 HOH HOH . O 4 HOH A 41 318 318 HOH HOH . O 4 HOH A 42 345 345 HOH HOH . O 4 HOH A 43 346 346 HOH HOH . O 4 HOH A 44 347 347 HOH HOH . O 4 HOH A 45 348 348 HOH HOH . O 4 HOH A 46 349 349 HOH HOH . O 4 HOH A 47 350 350 HOH HOH . O 4 HOH A 48 351 351 HOH HOH . O 4 HOH A 49 352 352 HOH HOH . O 4 HOH A 50 353 353 HOH HOH . O 4 HOH A 51 354 354 HOH HOH . O 4 HOH A 52 355 355 HOH HOH . O 4 HOH A 53 356 356 HOH HOH . O 4 HOH A 54 357 357 HOH HOH . O 4 HOH A 55 358 358 HOH HOH . O 4 HOH A 56 359 359 HOH HOH . O 4 HOH A 57 360 360 HOH HOH . O 4 HOH A 58 361 361 HOH HOH . O 4 HOH A 59 362 362 HOH HOH . O 4 HOH A 60 363 363 HOH HOH . O 4 HOH A 61 364 364 HOH HOH . O 4 HOH A 62 365 365 HOH HOH . O 4 HOH A 63 366 366 HOH HOH . O 4 HOH A 64 367 367 HOH HOH . O 4 HOH A 65 368 368 HOH HOH . O 4 HOH A 66 370 370 HOH HOH . O 4 HOH A 67 371 371 HOH HOH . O 4 HOH A 68 372 372 HOH HOH . O 4 HOH A 69 373 373 HOH HOH . O 4 HOH A 70 374 374 HOH HOH . O 4 HOH A 71 375 375 HOH HOH . O 4 HOH A 72 376 376 HOH HOH . O 4 HOH A 73 377 377 HOH HOH . O 4 HOH A 74 378 378 HOH HOH . O 4 HOH A 75 379 379 HOH HOH . O 4 HOH A 76 380 380 HOH HOH . O 4 HOH A 77 381 381 HOH HOH . O 4 HOH A 78 382 382 HOH HOH . O 4 HOH A 79 383 383 HOH HOH . O 4 HOH A 80 384 384 HOH HOH . O 4 HOH A 81 385 385 HOH HOH . O 4 HOH A 82 386 386 HOH HOH . O 4 HOH A 83 387 387 HOH HOH . O 4 HOH A 84 388 388 HOH HOH . O 4 HOH A 85 389 389 HOH HOH . O 4 HOH A 86 390 390 HOH HOH . O 4 HOH A 87 391 391 HOH HOH . O 4 HOH A 88 392 392 HOH HOH . O 4 HOH A 89 393 393 HOH HOH . O 4 HOH A 90 394 394 HOH HOH . O 4 HOH A 91 395 395 HOH HOH . O 4 HOH A 92 396 396 HOH HOH . O 4 HOH A 93 397 397 HOH HOH . O 4 HOH A 94 398 398 HOH HOH . O 4 HOH A 95 399 399 HOH HOH . O 4 HOH A 96 400 400 HOH HOH . O 4 HOH A 97 401 401 HOH HOH . O 4 HOH A 98 402 402 HOH HOH . O 4 HOH A 99 403 403 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N CCN . . . L 3 86.869 87.943 68.192 1 34.46 ? N CCN 414 A 1 HETATM 2 C C1 CCN . . . L 3 86.021 87.667 68.889 1 34.41 ? C1 CCN 414 A 1 HETATM 3 C C2 CCN . . . L 3 84.942 87.334 69.8 1 33.96 ? C2 CCN 414 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 3 #