data_1SD1 # _model_server_result.job_id U7GEpemR-hiTtogqDsnl9g _model_server_result.datetime_utc '2024-11-24 20:06:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1sd1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1330}' # _entry.id 1SD1 # _exptl.entry_id 1SD1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 267.241 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1S)-1-(7-amino-1H-pyrazolo[4,3-d]pyrimidin-3-yl)-1,4-anhydro-D-ribitol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1SD1 _cell.length_a 121 _cell.length_b 121 _cell.length_c 44.2 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SD1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 121 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 60.5 104.789074 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H13 N5 O4' _chem_comp.formula_weight 267.241 _chem_comp.id FMC _chem_comp.mon_nstd_flag . _chem_comp.name (1S)-1-(7-amino-1H-pyrazolo[4,3-d]pyrimidin-3-yl)-1,4-anhydro-D-ribitol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMC doub 83 n y N1 C6 FMC sing 84 n y C2 N3 FMC sing 85 n y C2 H2 FMC sing 86 n n N3 C4 FMC doub 87 n y C4 C5 FMC sing 88 n y C4 C9 FMC sing 89 n y C5 C6 FMC doub 90 n y C5 N7 FMC sing 91 n y C6 N6 FMC sing 92 n n N6 HN6 FMC sing 93 n n N6 HN6A FMC sing 94 n n N7 N8 FMC sing 95 n y N7 HN7 FMC sing 96 n n N8 C9 FMC doub 97 n y C9 C1' FMC sing 98 n n C1' C2' FMC sing 99 n n C1' O4' FMC sing 100 n n C1' H1' FMC sing 101 n n C2' O2' FMC sing 102 n n C2' C3' FMC sing 103 n n C2' H2' FMC sing 104 n n O2' HO2' FMC sing 105 n n C3' O3' FMC sing 106 n n C3' C4' FMC sing 107 n n C3' H3' FMC sing 108 n n O3' HO3' FMC sing 109 n n C4' O4' FMC sing 110 n n C4' C5' FMC sing 111 n n C4' H4' FMC sing 112 n n C5' O5' FMC sing 113 n n C5' H5' FMC sing 114 n n C5' "H5'A" FMC sing 115 n n O5' HO5' FMC sing 116 n n # _atom_sites.entry_id 1SD1 _atom_sites.fract_transf_matrix[1][1] 0.008264 _atom_sites.fract_transf_matrix[1][2] 0.004771 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009543 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022624 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMC A 1 1330 1330 FMC FMC . C 3 HOH A 1 1331 1 HOH TIP . C 3 HOH A 2 1332 2 HOH TIP . C 3 HOH A 3 1333 3 HOH TIP . C 3 HOH A 4 1334 4 HOH TIP . C 3 HOH A 5 1335 5 HOH TIP . C 3 HOH A 6 1336 6 HOH TIP . C 3 HOH A 7 1337 7 HOH TIP . C 3 HOH A 8 1338 8 HOH TIP . C 3 HOH A 9 1339 9 HOH TIP . C 3 HOH A 10 1340 10 HOH TIP . C 3 HOH A 11 1341 11 HOH TIP . C 3 HOH A 12 1342 12 HOH TIP . C 3 HOH A 13 1343 13 HOH TIP . C 3 HOH A 14 1344 14 HOH TIP . C 3 HOH A 15 1345 15 HOH TIP . C 3 HOH A 16 1346 16 HOH TIP . C 3 HOH A 17 1347 17 HOH TIP . C 3 HOH A 18 1348 18 HOH TIP . C 3 HOH A 19 1349 19 HOH TIP . C 3 HOH A 20 1350 20 HOH TIP . C 3 HOH A 21 1351 21 HOH TIP . C 3 HOH A 22 1352 22 HOH TIP . C 3 HOH A 23 1353 23 HOH TIP . C 3 HOH A 24 1354 24 HOH TIP . C 3 HOH A 25 1355 25 HOH TIP . C 3 HOH A 26 1356 26 HOH TIP . C 3 HOH A 27 1357 27 HOH TIP . C 3 HOH A 28 1358 28 HOH TIP . C 3 HOH A 29 1359 29 HOH TIP . C 3 HOH A 30 1360 30 HOH TIP . C 3 HOH A 31 1361 32 HOH TIP . C 3 HOH A 32 1362 33 HOH TIP . C 3 HOH A 33 1363 34 HOH TIP . C 3 HOH A 34 1364 35 HOH TIP . C 3 HOH A 35 1365 36 HOH TIP . C 3 HOH A 36 1366 37 HOH TIP . C 3 HOH A 37 1367 38 HOH TIP . C 3 HOH A 38 1368 39 HOH TIP . C 3 HOH A 39 1369 40 HOH TIP . C 3 HOH A 40 1370 41 HOH TIP . C 3 HOH A 41 1371 42 HOH TIP . C 3 HOH A 42 1372 43 HOH TIP . C 3 HOH A 43 1373 44 HOH TIP . C 3 HOH A 44 1374 45 HOH TIP . C 3 HOH A 45 1375 46 HOH TIP . C 3 HOH A 46 1376 47 HOH TIP . C 3 HOH A 47 1377 48 HOH TIP . C 3 HOH A 48 1378 49 HOH TIP . C 3 HOH A 49 1379 50 HOH TIP . C 3 HOH A 50 1380 51 HOH TIP . C 3 HOH A 51 1381 52 HOH TIP . C 3 HOH A 52 1382 53 HOH TIP . C 3 HOH A 53 1383 54 HOH TIP . C 3 HOH A 54 1384 55 HOH TIP . C 3 HOH A 55 1385 56 HOH TIP . C 3 HOH A 56 1386 57 HOH TIP . C 3 HOH A 57 1387 58 HOH TIP . C 3 HOH A 58 1388 59 HOH TIP . C 3 HOH A 59 1389 60 HOH TIP . C 3 HOH A 60 1390 61 HOH TIP . C 3 HOH A 61 1391 62 HOH TIP . C 3 HOH A 62 1392 63 HOH TIP . C 3 HOH A 63 1393 64 HOH TIP . C 3 HOH A 64 1394 65 HOH TIP . C 3 HOH A 65 1395 66 HOH TIP . C 3 HOH A 66 1396 67 HOH TIP . C 3 HOH A 67 1397 68 HOH TIP . C 3 HOH A 68 1398 69 HOH TIP . C 3 HOH A 69 1399 70 HOH TIP . C 3 HOH A 70 1400 71 HOH TIP . C 3 HOH A 71 1401 72 HOH TIP . C 3 HOH A 72 1402 73 HOH TIP . C 3 HOH A 73 1403 74 HOH TIP . C 3 HOH A 74 1404 75 HOH TIP . C 3 HOH A 75 1405 76 HOH TIP . C 3 HOH A 76 1406 77 HOH TIP . C 3 HOH A 77 1407 78 HOH TIP . C 3 HOH A 78 1408 79 HOH TIP . C 3 HOH A 79 1409 80 HOH TIP . C 3 HOH A 80 1410 81 HOH TIP . C 3 HOH A 81 1411 82 HOH TIP . C 3 HOH A 82 1412 83 HOH TIP . C 3 HOH A 83 1413 84 HOH TIP . C 3 HOH A 84 1414 85 HOH TIP . C 3 HOH A 85 1415 86 HOH TIP . C 3 HOH A 86 1416 87 HOH TIP . C 3 HOH A 87 1417 88 HOH TIP . C 3 HOH A 88 1418 89 HOH TIP . C 3 HOH A 89 1419 90 HOH TIP . C 3 HOH A 90 1420 91 HOH TIP . C 3 HOH A 91 1421 92 HOH TIP . C 3 HOH A 92 1422 93 HOH TIP . C 3 HOH A 93 1423 94 HOH TIP . C 3 HOH A 94 1424 95 HOH TIP . C 3 HOH A 95 1425 96 HOH TIP . C 3 HOH A 96 1426 97 HOH TIP . C 3 HOH A 97 1427 98 HOH TIP . C 3 HOH A 98 1428 99 HOH TIP . C 3 HOH A 99 1429 100 HOH TIP . C 3 HOH A 100 1430 101 HOH TIP . C 3 HOH A 101 1431 102 HOH TIP . C 3 HOH A 102 1432 103 HOH TIP . C 3 HOH A 103 1433 104 HOH TIP . C 3 HOH A 104 1434 105 HOH TIP . C 3 HOH A 105 1435 106 HOH TIP . C 3 HOH A 106 1436 107 HOH TIP . C 3 HOH A 107 1437 108 HOH TIP . C 3 HOH A 108 1438 109 HOH TIP . C 3 HOH A 109 1439 110 HOH TIP . C 3 HOH A 110 1440 111 HOH TIP . C 3 HOH A 111 1441 112 HOH TIP . C 3 HOH A 112 1442 113 HOH TIP . C 3 HOH A 113 1443 114 HOH TIP . C 3 HOH A 114 1444 115 HOH TIP . C 3 HOH A 115 1445 116 HOH TIP . C 3 HOH A 116 1446 117 HOH TIP . C 3 HOH A 117 1447 118 HOH TIP . C 3 HOH A 118 1448 119 HOH TIP . C 3 HOH A 119 1449 120 HOH TIP . C 3 HOH A 120 1450 121 HOH TIP . C 3 HOH A 121 1451 122 HOH TIP . C 3 HOH A 122 1452 123 HOH TIP . C 3 HOH A 123 1453 124 HOH TIP . C 3 HOH A 124 1454 125 HOH TIP . C 3 HOH A 125 1455 126 HOH TIP . C 3 HOH A 126 1456 127 HOH TIP . C 3 HOH A 127 1457 128 HOH TIP . C 3 HOH A 128 1458 129 HOH TIP . C 3 HOH A 129 1459 130 HOH TIP . C 3 HOH A 130 1460 131 HOH TIP . C 3 HOH A 131 1461 132 HOH TIP . C 3 HOH A 132 1462 133 HOH TIP . C 3 HOH A 133 1463 134 HOH TIP . C 3 HOH A 134 1464 135 HOH TIP . C 3 HOH A 135 1465 136 HOH TIP . C 3 HOH A 136 1466 137 HOH TIP . C 3 HOH A 137 1467 138 HOH TIP . C 3 HOH A 138 1468 139 HOH TIP . C 3 HOH A 139 1469 140 HOH TIP . C 3 HOH A 140 1470 141 HOH TIP . C 3 HOH A 141 1471 142 HOH TIP . C 3 HOH A 142 1472 143 HOH TIP . C 3 HOH A 143 1473 144 HOH TIP . C 3 HOH A 144 1474 145 HOH TIP . C 3 HOH A 145 1475 146 HOH TIP . C 3 HOH A 146 1476 147 HOH TIP . C 3 HOH A 147 1477 148 HOH TIP . C 3 HOH A 148 1478 149 HOH TIP . C 3 HOH A 149 1479 150 HOH TIP . C 3 HOH A 150 1480 151 HOH TIP . C 3 HOH A 151 1481 152 HOH TIP . C 3 HOH A 152 1482 153 HOH TIP . C 3 HOH A 153 1483 154 HOH TIP . C 3 HOH A 154 1484 155 HOH TIP . C 3 HOH A 155 1485 156 HOH TIP . C 3 HOH A 156 1486 157 HOH TIP . C 3 HOH A 157 1487 158 HOH TIP . C 3 HOH A 158 1488 159 HOH TIP . C 3 HOH A 159 1489 160 HOH TIP . C 3 HOH A 160 1490 161 HOH TIP . C 3 HOH A 161 1491 162 HOH TIP . C 3 HOH A 162 1492 163 HOH TIP . C 3 HOH A 163 1493 164 HOH TIP . C 3 HOH A 164 1494 165 HOH TIP . C 3 HOH A 165 1495 166 HOH TIP . C 3 HOH A 166 1496 167 HOH TIP . C 3 HOH A 167 1497 168 HOH TIP . C 3 HOH A 168 1498 169 HOH TIP . C 3 HOH A 169 1499 170 HOH TIP . C 3 HOH A 170 1500 171 HOH TIP . C 3 HOH A 171 1501 172 HOH TIP . C 3 HOH A 172 1502 173 HOH TIP . C 3 HOH A 173 1503 174 HOH TIP . C 3 HOH A 174 1504 175 HOH TIP . C 3 HOH A 175 1505 176 HOH TIP . C 3 HOH A 176 1506 177 HOH TIP . C 3 HOH A 177 1507 178 HOH TIP . C 3 HOH A 178 1508 179 HOH TIP . C 3 HOH A 179 1509 180 HOH TIP . C 3 HOH A 180 1510 181 HOH TIP . C 3 HOH A 181 1511 182 HOH TIP . C 3 HOH A 182 1512 183 HOH TIP . C 3 HOH A 183 1513 184 HOH TIP . C 3 HOH A 184 1514 185 HOH TIP . C 3 HOH A 185 1515 186 HOH TIP . C 3 HOH A 186 1516 187 HOH TIP . C 3 HOH A 187 1517 188 HOH TIP . C 3 HOH A 188 1518 189 HOH TIP . C 3 HOH A 189 1519 190 HOH TIP . C 3 HOH A 190 1520 191 HOH TIP . C 3 HOH A 191 1521 192 HOH TIP . C 3 HOH A 192 1522 193 HOH TIP . C 3 HOH A 193 1523 194 HOH TIP . C 3 HOH A 194 1524 195 HOH TIP . C 3 HOH A 195 1525 196 HOH TIP . C 3 HOH A 196 1526 197 HOH TIP . C 3 HOH A 197 1527 198 HOH TIP . C 3 HOH A 198 1528 199 HOH TIP . C 3 HOH A 199 1529 200 HOH TIP . C 3 HOH A 200 1530 201 HOH TIP . C 3 HOH A 201 1531 202 HOH TIP . C 3 HOH A 202 1532 203 HOH TIP . C 3 HOH A 203 1533 204 HOH TIP . C 3 HOH A 204 1534 205 HOH TIP . C 3 HOH A 205 1535 206 HOH TIP . C 3 HOH A 206 1536 207 HOH TIP . C 3 HOH A 207 1537 208 HOH TIP . C 3 HOH A 208 1538 209 HOH TIP . C 3 HOH A 209 1539 210 HOH TIP . C 3 HOH A 210 1540 211 HOH TIP . C 3 HOH A 211 1541 212 HOH TIP . C 3 HOH A 212 1542 213 HOH TIP . C 3 HOH A 213 1543 214 HOH TIP . C 3 HOH A 214 1544 215 HOH TIP . C 3 HOH A 215 1545 216 HOH TIP . C 3 HOH A 216 1546 217 HOH TIP . C 3 HOH A 217 1547 218 HOH TIP . C 3 HOH A 218 1548 219 HOH TIP . C 3 HOH A 219 1549 220 HOH TIP . C 3 HOH A 220 1550 221 HOH TIP . C 3 HOH A 221 1551 222 HOH TIP . C 3 HOH A 222 1552 223 HOH TIP . C 3 HOH A 223 1553 224 HOH TIP . C 3 HOH A 224 1554 225 HOH TIP . C 3 HOH A 225 1555 226 HOH TIP . C 3 HOH A 226 1556 227 HOH TIP . C 3 HOH A 227 1557 228 HOH TIP . C 3 HOH A 228 1558 229 HOH TIP . C 3 HOH A 229 1559 230 HOH TIP . C 3 HOH A 230 1560 231 HOH TIP . C 3 HOH A 231 1561 232 HOH TIP . C 3 HOH A 232 1562 233 HOH TIP . C 3 HOH A 233 1563 234 HOH TIP . C 3 HOH A 234 1564 235 HOH TIP . C 3 HOH A 235 1565 236 HOH TIP . C 3 HOH A 236 1566 237 HOH TIP . C 3 HOH A 237 1567 238 HOH TIP . C 3 HOH A 238 1568 239 HOH TIP . C 3 HOH A 239 1569 240 HOH TIP . C 3 HOH A 240 1570 241 HOH TIP . C 3 HOH A 241 1571 242 HOH TIP . C 3 HOH A 242 1572 243 HOH TIP . C 3 HOH A 243 1573 244 HOH TIP . C 3 HOH A 244 1574 245 HOH TIP . C 3 HOH A 245 1575 246 HOH TIP . C 3 HOH A 246 1576 247 HOH TIP . C 3 HOH A 247 1577 248 HOH TIP . C 3 HOH A 248 1578 249 HOH TIP . C 3 HOH A 249 1579 250 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMC . . . B 2 58.834 19.258 25.317 1 12.29 ? N1 FMC 1330 A 1 HETATM 2 C C2 FMC . . . B 2 59.489 19.634 26.46 1 11.9 ? C2 FMC 1330 A 1 HETATM 3 N N3 FMC . . . B 2 60.22 18.82 27.267 1 12.18 ? N3 FMC 1330 A 1 HETATM 4 C C4 FMC . . . B 2 60.269 17.461 26.826 1 12.92 ? C4 FMC 1330 A 1 HETATM 5 C C5 FMC . . . B 2 59.611 17 25.644 1 12.56 ? C5 FMC 1330 A 1 HETATM 6 C C6 FMC . . . B 2 58.853 17.958 24.851 1 10.65 ? C6 FMC 1330 A 1 HETATM 7 N N6 FMC . . . B 2 58.205 17.616 23.732 1 9.74 ? N6 FMC 1330 A 1 HETATM 8 N N7 FMC . . . B 2 59.861 15.67 25.519 1 11.79 ? N7 FMC 1330 A 1 HETATM 9 N N8 FMC . . . B 2 60.637 15.238 26.547 1 13.82 ? N8 FMC 1330 A 1 HETATM 10 C C9 FMC . . . B 2 60.916 16.27 27.368 1 14.19 ? C9 FMC 1330 A 1 HETATM 11 C C1' FMC . . . B 2 61.729 16.207 28.609 1 17.5 ? C1' FMC 1330 A 1 HETATM 12 C C2' FMC . . . B 2 61.741 17.335 29.716 1 17.8 ? C2' FMC 1330 A 1 HETATM 13 O O2' FMC . . . B 2 63.058 17.988 29.803 1 18.79 ? O2' FMC 1330 A 1 HETATM 14 C C3' FMC . . . B 2 61.352 16.643 31.1 1 20.48 ? C3' FMC 1330 A 1 HETATM 15 O O3' FMC . . . B 2 62.531 16.415 31.978 1 21.34 ? O3' FMC 1330 A 1 HETATM 16 C C4' FMC . . . B 2 60.699 15.366 30.613 1 21.47 ? C4' FMC 1330 A 1 HETATM 17 O O4' FMC . . . B 2 61.353 15.013 29.36 1 19.33 ? O4' FMC 1330 A 1 HETATM 18 C C5' FMC . . . B 2 59.168 15.423 30.329 1 24.18 ? C5' FMC 1330 A 1 HETATM 19 O O5' FMC . . . B 2 58.504 14.318 29.869 1 28.96 ? O5' FMC 1330 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 19 #