data_1SES # _model_server_result.job_id fN_sLkV7DUfPmbjdIUq-cw _model_server_result.datetime_utc '2024-11-15 11:57:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ses # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":422}' # _entry.id 1SES # _exptl.entry_id 1SES _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 449.313 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SERYL-HYDROXAMATE-ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.8 _cell.angle_gamma 90 _cell.entry_id 1SES _cell.length_a 85.1 _cell.length_b 125.2 _cell.length_c 62.4 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SES _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C13 H20 N7 O9 P' _chem_comp.formula_weight 449.313 _chem_comp.id AHX _chem_comp.mon_nstd_flag . _chem_comp.name 'SERYL-HYDROXAMATE-ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N10 CA AHX sing 1 n n N10 HN11 AHX sing 2 n n N10 HN12 AHX sing 3 n n CA CB AHX sing 4 n n CA C9 AHX sing 5 n n CA HA AHX sing 6 n n CB OG AHX sing 7 n n CB HB1 AHX sing 8 n n CB HB2 AHX sing 9 n n OG HOG AHX sing 10 n n C9 O9 AHX doub 11 n n C9 N8 AHX sing 12 n n N8 O3A AHX sing 13 n n N8 HN8 AHX sing 14 n n PA O1A AHX doub 15 n n PA O2A AHX sing 16 n n PA O3A AHX sing 17 n n PA O5' AHX sing 18 n n O2A HOA2 AHX sing 19 n n O5' C5' AHX sing 20 n n C5' C4' AHX sing 21 n n C5' "H5'1" AHX sing 22 n n C5' "H5'2" AHX sing 23 n n C4' O4' AHX sing 24 n n C4' C3' AHX sing 25 n n C4' H4' AHX sing 26 n n O4' C1' AHX sing 27 n n C3' O3' AHX sing 28 n n C3' C2' AHX sing 29 n n C3' H3' AHX sing 30 n n O3' HO3' AHX sing 31 n n C2' O2' AHX sing 32 n n C2' C1' AHX sing 33 n n C2' H2' AHX sing 34 n n O2' HO2' AHX sing 35 n n C1' N9 AHX sing 36 n n C1' H1' AHX sing 37 n n N9 C8 AHX sing 38 n y N9 C4 AHX sing 39 n y C8 N7 AHX doub 40 n y C8 H8 AHX sing 41 n n N7 C5 AHX sing 42 n y C5 C6 AHX sing 43 n y C5 C4 AHX doub 44 n y C6 N6 AHX sing 45 n n C6 N1 AHX doub 46 n y N6 HN61 AHX sing 47 n n N6 HN62 AHX sing 48 n n N1 C2 AHX sing 49 n y C2 N3 AHX doub 50 n y C2 H2 AHX sing 51 n n N3 C4 AHX sing 52 n y # _atom_sites.entry_id 1SES _atom_sites.fract_transf_matrix[1][1] 0.011751 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007987 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016929 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AHX A 1 422 422 AHX AHX . D 3 AMP B 1 423 423 AMP AMP . E 4 HOH A 1 423 3 HOH HOH . E 4 HOH A 2 424 4 HOH HOH . E 4 HOH A 3 425 5 HOH HOH . E 4 HOH A 4 426 6 HOH HOH . E 4 HOH A 5 427 7 HOH HOH . E 4 HOH A 6 428 8 HOH HOH . E 4 HOH A 7 429 9 HOH HOH . E 4 HOH A 8 430 10 HOH HOH . E 4 HOH A 9 431 13 HOH HOH . E 4 HOH A 10 432 28 HOH HOH . E 4 HOH A 11 433 29 HOH HOH . E 4 HOH A 12 434 30 HOH HOH . E 4 HOH A 13 435 31 HOH HOH . E 4 HOH A 14 436 32 HOH HOH . E 4 HOH A 15 437 37 HOH HOH . E 4 HOH A 16 438 38 HOH HOH . E 4 HOH A 17 439 39 HOH HOH . E 4 HOH A 18 440 51 HOH HOH . E 4 HOH A 19 441 52 HOH HOH . E 4 HOH A 20 442 53 HOH HOH . E 4 HOH A 21 443 54 HOH HOH . E 4 HOH A 22 444 55 HOH HOH . E 4 HOH A 23 445 56 HOH HOH . E 4 HOH A 24 446 57 HOH HOH . E 4 HOH A 25 447 58 HOH HOH . E 4 HOH A 26 448 59 HOH HOH . E 4 HOH A 27 449 60 HOH HOH . E 4 HOH A 28 450 61 HOH HOH . E 4 HOH A 29 451 62 HOH HOH . E 4 HOH A 30 452 63 HOH HOH . E 4 HOH A 31 453 64 HOH HOH . E 4 HOH A 32 454 72 HOH HOH . E 4 HOH A 33 455 73 HOH HOH . E 4 HOH A 34 456 76 HOH HOH . E 4 HOH A 35 457 80 HOH HOH . E 4 HOH A 36 458 81 HOH HOH . E 4 HOH A 37 459 82 HOH HOH . E 4 HOH A 38 460 83 HOH HOH . E 4 HOH A 39 461 84 HOH HOH . E 4 HOH A 40 462 85 HOH HOH . E 4 HOH A 41 463 86 HOH HOH . E 4 HOH A 42 464 87 HOH HOH . E 4 HOH A 43 465 88 HOH HOH . E 4 HOH A 44 466 95 HOH HOH . E 4 HOH A 45 467 96 HOH HOH . E 4 HOH A 46 468 97 HOH HOH . E 4 HOH A 47 469 100 HOH HOH . E 4 HOH A 48 470 101 HOH HOH . E 4 HOH A 49 471 102 HOH HOH . E 4 HOH A 50 472 103 HOH HOH . E 4 HOH A 51 473 107 HOH HOH . E 4 HOH A 52 474 108 HOH HOH . E 4 HOH A 53 475 109 HOH HOH . E 4 HOH A 54 476 110 HOH HOH . E 4 HOH A 55 477 111 HOH HOH . E 4 HOH A 56 478 113 HOH HOH . E 4 HOH A 57 479 114 HOH HOH . E 4 HOH A 58 480 129 HOH HOH . E 4 HOH A 59 481 130 HOH HOH . E 4 HOH A 60 482 131 HOH HOH . E 4 HOH A 61 483 132 HOH HOH . F 4 HOH B 1 424 11 HOH HOH . F 4 HOH B 2 425 12 HOH HOH . F 4 HOH B 3 426 14 HOH HOH . F 4 HOH B 4 427 15 HOH HOH . F 4 HOH B 5 428 16 HOH HOH . F 4 HOH B 6 429 17 HOH HOH . F 4 HOH B 7 430 18 HOH HOH . F 4 HOH B 8 431 19 HOH HOH . F 4 HOH B 9 432 20 HOH HOH . F 4 HOH B 10 433 21 HOH HOH . F 4 HOH B 11 434 22 HOH HOH . F 4 HOH B 12 435 23 HOH HOH . F 4 HOH B 13 436 24 HOH HOH . F 4 HOH B 14 437 25 HOH HOH . F 4 HOH B 15 438 26 HOH HOH . F 4 HOH B 16 439 27 HOH HOH . F 4 HOH B 17 440 33 HOH HOH . F 4 HOH B 18 441 34 HOH HOH . F 4 HOH B 19 442 35 HOH HOH . F 4 HOH B 20 443 36 HOH HOH . F 4 HOH B 21 444 41 HOH HOH . F 4 HOH B 22 445 42 HOH HOH . F 4 HOH B 23 446 43 HOH HOH . F 4 HOH B 24 447 44 HOH HOH . F 4 HOH B 25 448 45 HOH HOH . F 4 HOH B 26 449 46 HOH HOH . F 4 HOH B 27 450 47 HOH HOH . F 4 HOH B 28 451 48 HOH HOH . F 4 HOH B 29 452 49 HOH HOH . F 4 HOH B 30 453 40 HOH HOH . F 4 HOH B 31 454 65 HOH HOH . F 4 HOH B 32 455 66 HOH HOH . F 4 HOH B 33 456 67 HOH HOH . F 4 HOH B 34 457 68 HOH HOH . F 4 HOH B 35 458 69 HOH HOH . F 4 HOH B 36 459 70 HOH HOH . F 4 HOH B 37 460 71 HOH HOH . F 4 HOH B 38 461 74 HOH HOH . F 4 HOH B 39 462 75 HOH HOH . F 4 HOH B 40 463 77 HOH HOH . F 4 HOH B 41 464 78 HOH HOH . F 4 HOH B 42 465 79 HOH HOH . F 4 HOH B 43 466 89 HOH HOH . F 4 HOH B 44 467 90 HOH HOH . F 4 HOH B 45 468 91 HOH HOH . F 4 HOH B 46 469 92 HOH HOH . F 4 HOH B 47 470 93 HOH HOH . F 4 HOH B 48 471 94 HOH HOH . F 4 HOH B 49 472 98 HOH HOH . F 4 HOH B 50 473 99 HOH HOH . F 4 HOH B 51 474 104 HOH HOH . F 4 HOH B 52 475 105 HOH HOH . F 4 HOH B 53 476 106 HOH HOH . F 4 HOH B 54 477 112 HOH HOH . F 4 HOH B 55 478 115 HOH HOH . F 4 HOH B 56 479 116 HOH HOH . F 4 HOH B 57 480 117 HOH HOH . F 4 HOH B 58 481 118 HOH HOH . F 4 HOH B 59 482 119 HOH HOH . F 4 HOH B 60 483 120 HOH HOH . F 4 HOH B 61 484 121 HOH HOH . F 4 HOH B 62 485 122 HOH HOH . F 4 HOH B 63 486 123 HOH HOH . F 4 HOH B 64 487 124 HOH HOH . F 4 HOH B 65 488 125 HOH HOH . F 4 HOH B 66 489 126 HOH HOH . F 4 HOH B 67 490 127 HOH HOH . F 4 HOH B 68 491 128 HOH HOH . F 4 HOH B 69 492 133 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N10 AHX . . . C 2 52.255 11.523 62.964 0.64 9.59 ? N10 AHX 422 A 1 HETATM 2 C CA AHX . . . C 2 52.865 12.783 62.641 0.64 9.48 ? CA AHX 422 A 1 HETATM 3 C CB AHX . . . C 2 54.348 12.659 62.755 0.64 6.98 ? CB AHX 422 A 1 HETATM 4 O OG AHX . . . C 2 54.704 11.505 61.979 0.64 2.33 ? OG AHX 422 A 1 HETATM 5 C C9 AHX . . . C 2 52.444 12.862 61.205 0.64 10.69 ? C9 AHX 422 A 1 HETATM 6 O O9 AHX . . . C 2 52.196 11.821 60.578 0.64 7.21 ? O9 AHX 422 A 1 HETATM 7 N N8 AHX . . . C 2 52.281 14.054 60.697 0.64 12.74 ? N8 AHX 422 A 1 HETATM 8 P PA AHX . . . C 2 52.974 14.634 58.408 0.77 18.04 ? PA AHX 422 A 1 HETATM 9 O O1A AHX . . . C 2 52.221 15.236 57.292 0.77 24.99 ? O1A AHX 422 A 1 HETATM 10 O O2A AHX . . . C 2 53.915 15.482 59.188 0.77 25.39 ? O2A AHX 422 A 1 HETATM 11 O O3A AHX . . . C 2 51.881 14.072 59.38 0.77 20.4 ? O3A AHX 422 A 1 HETATM 12 O O5' AHX . . . C 2 53.843 13.384 57.897 1 23.94 ? O5' AHX 422 A 1 HETATM 13 C C5' AHX . . . C 2 55.06 13.006 58.563 1 16.45 ? C5' AHX 422 A 1 HETATM 14 C C4' AHX . . . C 2 56.152 12.464 57.657 1 15.76 ? C4' AHX 422 A 1 HETATM 15 O O4' AHX . . . C 2 55.773 11.328 56.851 1 14.9 ? O4' AHX 422 A 1 HETATM 16 C C3' AHX . . . C 2 56.664 13.557 56.746 1 14.64 ? C3' AHX 422 A 1 HETATM 17 O O3' AHX . . . C 2 57.63 14.388 57.418 1 16.34 ? O3' AHX 422 A 1 HETATM 18 C C2' AHX . . . C 2 57.288 12.752 55.641 1 13.27 ? C2' AHX 422 A 1 HETATM 19 O O2' AHX . . . C 2 58.501 12.209 56.094 1 10.07 ? O2' AHX 422 A 1 HETATM 20 C C1' AHX . . . C 2 56.313 11.597 55.547 1 15.33 ? C1' AHX 422 A 1 HETATM 21 N N9 AHX . . . C 2 55.241 11.891 54.598 1 13.53 ? N9 AHX 422 A 1 HETATM 22 C C8 AHX . . . C 2 53.989 12.446 54.819 1 11.25 ? C8 AHX 422 A 1 HETATM 23 N N7 AHX . . . C 2 53.216 12.395 53.758 1 12.33 ? N7 AHX 422 A 1 HETATM 24 C C5 AHX . . . C 2 53.996 11.763 52.778 1 10.8 ? C5 AHX 422 A 1 HETATM 25 C C6 AHX . . . C 2 53.721 11.351 51.465 1 7.69 ? C6 AHX 422 A 1 HETATM 26 N N6 AHX . . . C 2 52.549 11.548 50.872 1 7.23 ? N6 AHX 422 A 1 HETATM 27 N N1 AHX . . . C 2 54.693 10.713 50.82 1 5.64 ? N1 AHX 422 A 1 HETATM 28 C C2 AHX . . . C 2 55.838 10.436 51.438 1 4.28 ? C2 AHX 422 A 1 HETATM 29 N N3 AHX . . . C 2 56.181 10.634 52.697 1 8.78 ? N3 AHX 422 A 1 HETATM 30 C C4 AHX . . . C 2 55.213 11.388 53.302 1 13.26 ? C4 AHX 422 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 30 #