data_1SES # _model_server_result.job_id NpfyYjfp7F4OBaf0uNw7xQ _model_server_result.datetime_utc '2024-11-15 11:49:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ses # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":423}' # _entry.id 1SES # _exptl.entry_id 1SES _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.8 _cell.angle_gamma 90 _cell.entry_id 1SES _cell.length_a 85.1 _cell.length_b 125.2 _cell.length_c 62.4 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SES _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 65 n n P O2P AMP sing 66 n n P O3P AMP sing 67 n n P O5' AMP sing 68 n n O2P HOP2 AMP sing 69 n n O3P HOP3 AMP sing 70 n n O5' C5' AMP sing 71 n n C5' C4' AMP sing 72 n n C5' "H5'1" AMP sing 73 n n C5' "H5'2" AMP sing 74 n n C4' O4' AMP sing 75 n n C4' C3' AMP sing 76 n n C4' H4' AMP sing 77 n n O4' C1' AMP sing 78 n n C3' O3' AMP sing 79 n n C3' C2' AMP sing 80 n n C3' H3' AMP sing 81 n n O3' HO3' AMP sing 82 n n C2' O2' AMP sing 83 n n C2' C1' AMP sing 84 n n C2' H2' AMP sing 85 n n O2' HO2' AMP sing 86 n n C1' N9 AMP sing 87 n n C1' H1' AMP sing 88 n n N9 C8 AMP sing 89 n y N9 C4 AMP sing 90 n y C8 N7 AMP doub 91 n y C8 H8 AMP sing 92 n n N7 C5 AMP sing 93 n y C5 C6 AMP sing 94 n y C5 C4 AMP doub 95 n y C6 N6 AMP sing 96 n n C6 N1 AMP doub 97 n y N6 HN61 AMP sing 98 n n N6 HN62 AMP sing 99 n n N1 C2 AMP sing 100 n y C2 N3 AMP doub 101 n y C2 H2 AMP sing 102 n n N3 C4 AMP sing 103 n y # _atom_sites.entry_id 1SES _atom_sites.fract_transf_matrix[1][1] 0.011751 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007987 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016929 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AHX A 1 422 422 AHX AHX . D 3 AMP B 1 423 423 AMP AMP . E 4 HOH A 1 423 3 HOH HOH . E 4 HOH A 2 424 4 HOH HOH . E 4 HOH A 3 425 5 HOH HOH . E 4 HOH A 4 426 6 HOH HOH . E 4 HOH A 5 427 7 HOH HOH . E 4 HOH A 6 428 8 HOH HOH . E 4 HOH A 7 429 9 HOH HOH . E 4 HOH A 8 430 10 HOH HOH . E 4 HOH A 9 431 13 HOH HOH . E 4 HOH A 10 432 28 HOH HOH . E 4 HOH A 11 433 29 HOH HOH . E 4 HOH A 12 434 30 HOH HOH . E 4 HOH A 13 435 31 HOH HOH . E 4 HOH A 14 436 32 HOH HOH . E 4 HOH A 15 437 37 HOH HOH . E 4 HOH A 16 438 38 HOH HOH . E 4 HOH A 17 439 39 HOH HOH . E 4 HOH A 18 440 51 HOH HOH . E 4 HOH A 19 441 52 HOH HOH . E 4 HOH A 20 442 53 HOH HOH . E 4 HOH A 21 443 54 HOH HOH . E 4 HOH A 22 444 55 HOH HOH . E 4 HOH A 23 445 56 HOH HOH . E 4 HOH A 24 446 57 HOH HOH . E 4 HOH A 25 447 58 HOH HOH . E 4 HOH A 26 448 59 HOH HOH . E 4 HOH A 27 449 60 HOH HOH . E 4 HOH A 28 450 61 HOH HOH . E 4 HOH A 29 451 62 HOH HOH . E 4 HOH A 30 452 63 HOH HOH . E 4 HOH A 31 453 64 HOH HOH . E 4 HOH A 32 454 72 HOH HOH . E 4 HOH A 33 455 73 HOH HOH . E 4 HOH A 34 456 76 HOH HOH . E 4 HOH A 35 457 80 HOH HOH . E 4 HOH A 36 458 81 HOH HOH . E 4 HOH A 37 459 82 HOH HOH . E 4 HOH A 38 460 83 HOH HOH . E 4 HOH A 39 461 84 HOH HOH . E 4 HOH A 40 462 85 HOH HOH . E 4 HOH A 41 463 86 HOH HOH . E 4 HOH A 42 464 87 HOH HOH . E 4 HOH A 43 465 88 HOH HOH . E 4 HOH A 44 466 95 HOH HOH . E 4 HOH A 45 467 96 HOH HOH . E 4 HOH A 46 468 97 HOH HOH . E 4 HOH A 47 469 100 HOH HOH . E 4 HOH A 48 470 101 HOH HOH . E 4 HOH A 49 471 102 HOH HOH . E 4 HOH A 50 472 103 HOH HOH . E 4 HOH A 51 473 107 HOH HOH . E 4 HOH A 52 474 108 HOH HOH . E 4 HOH A 53 475 109 HOH HOH . E 4 HOH A 54 476 110 HOH HOH . E 4 HOH A 55 477 111 HOH HOH . E 4 HOH A 56 478 113 HOH HOH . E 4 HOH A 57 479 114 HOH HOH . E 4 HOH A 58 480 129 HOH HOH . E 4 HOH A 59 481 130 HOH HOH . E 4 HOH A 60 482 131 HOH HOH . E 4 HOH A 61 483 132 HOH HOH . F 4 HOH B 1 424 11 HOH HOH . F 4 HOH B 2 425 12 HOH HOH . F 4 HOH B 3 426 14 HOH HOH . F 4 HOH B 4 427 15 HOH HOH . F 4 HOH B 5 428 16 HOH HOH . F 4 HOH B 6 429 17 HOH HOH . F 4 HOH B 7 430 18 HOH HOH . F 4 HOH B 8 431 19 HOH HOH . F 4 HOH B 9 432 20 HOH HOH . F 4 HOH B 10 433 21 HOH HOH . F 4 HOH B 11 434 22 HOH HOH . F 4 HOH B 12 435 23 HOH HOH . F 4 HOH B 13 436 24 HOH HOH . F 4 HOH B 14 437 25 HOH HOH . F 4 HOH B 15 438 26 HOH HOH . F 4 HOH B 16 439 27 HOH HOH . F 4 HOH B 17 440 33 HOH HOH . F 4 HOH B 18 441 34 HOH HOH . F 4 HOH B 19 442 35 HOH HOH . F 4 HOH B 20 443 36 HOH HOH . F 4 HOH B 21 444 41 HOH HOH . F 4 HOH B 22 445 42 HOH HOH . F 4 HOH B 23 446 43 HOH HOH . F 4 HOH B 24 447 44 HOH HOH . F 4 HOH B 25 448 45 HOH HOH . F 4 HOH B 26 449 46 HOH HOH . F 4 HOH B 27 450 47 HOH HOH . F 4 HOH B 28 451 48 HOH HOH . F 4 HOH B 29 452 49 HOH HOH . F 4 HOH B 30 453 40 HOH HOH . F 4 HOH B 31 454 65 HOH HOH . F 4 HOH B 32 455 66 HOH HOH . F 4 HOH B 33 456 67 HOH HOH . F 4 HOH B 34 457 68 HOH HOH . F 4 HOH B 35 458 69 HOH HOH . F 4 HOH B 36 459 70 HOH HOH . F 4 HOH B 37 460 71 HOH HOH . F 4 HOH B 38 461 74 HOH HOH . F 4 HOH B 39 462 75 HOH HOH . F 4 HOH B 40 463 77 HOH HOH . F 4 HOH B 41 464 78 HOH HOH . F 4 HOH B 42 465 79 HOH HOH . F 4 HOH B 43 466 89 HOH HOH . F 4 HOH B 44 467 90 HOH HOH . F 4 HOH B 45 468 91 HOH HOH . F 4 HOH B 46 469 92 HOH HOH . F 4 HOH B 47 470 93 HOH HOH . F 4 HOH B 48 471 94 HOH HOH . F 4 HOH B 49 472 98 HOH HOH . F 4 HOH B 50 473 99 HOH HOH . F 4 HOH B 51 474 104 HOH HOH . F 4 HOH B 52 475 105 HOH HOH . F 4 HOH B 53 476 106 HOH HOH . F 4 HOH B 54 477 112 HOH HOH . F 4 HOH B 55 478 115 HOH HOH . F 4 HOH B 56 479 116 HOH HOH . F 4 HOH B 57 480 117 HOH HOH . F 4 HOH B 58 481 118 HOH HOH . F 4 HOH B 59 482 119 HOH HOH . F 4 HOH B 60 483 120 HOH HOH . F 4 HOH B 61 484 121 HOH HOH . F 4 HOH B 62 485 122 HOH HOH . F 4 HOH B 63 486 123 HOH HOH . F 4 HOH B 64 487 124 HOH HOH . F 4 HOH B 65 488 125 HOH HOH . F 4 HOH B 66 489 126 HOH HOH . F 4 HOH B 67 490 127 HOH HOH . F 4 HOH B 68 491 128 HOH HOH . F 4 HOH B 69 492 133 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . D 3 47.09 -17.047 48.786 0.85 14.09 ? P AMP 423 B 1 HETATM 2 O O1P AMP . . . D 3 47.795 -16.44 47.401 0.85 22.13 ? O1P AMP 423 B 1 HETATM 3 O O2P AMP . . . D 3 45.735 -16.534 48.886 0.85 15.32 ? O2P AMP 423 B 1 HETATM 4 O O3P AMP . . . D 3 47.29 -18.509 48.899 0.85 22.1 ? O3P AMP 423 B 1 HETATM 5 O O5' AMP . . . D 3 48.05 -16.389 49.853 1 17 ? O5' AMP 423 B 1 HETATM 6 C C5' AMP . . . D 3 49.373 -16.896 49.976 1 8.16 ? C5' AMP 423 B 1 HETATM 7 C C4' AMP . . . D 3 49.771 -16.923 51.453 1 18.21 ? C4' AMP 423 B 1 HETATM 8 O O4' AMP . . . D 3 49.552 -15.673 52.137 1 19.35 ? O4' AMP 423 B 1 HETATM 9 C C3' AMP . . . D 3 49.003 -17.912 52.318 1 16.98 ? C3' AMP 423 B 1 HETATM 10 O O3' AMP . . . D 3 49.607 -19.188 52.202 1 18.52 ? O3' AMP 423 B 1 HETATM 11 C C2' AMP . . . D 3 49.272 -17.364 53.675 1 16.27 ? C2' AMP 423 B 1 HETATM 12 O O2' AMP . . . D 3 50.656 -17.518 53.98 1 15.33 ? O2' AMP 423 B 1 HETATM 13 C C1' AMP . . . D 3 49.071 -15.895 53.478 1 16.33 ? C1' AMP 423 B 1 HETATM 14 N N9 AMP . . . D 3 47.676 -15.451 53.706 1 13.66 ? N9 AMP 423 B 1 HETATM 15 C C8 AMP . . . D 3 46.616 -15.432 52.819 1 14.79 ? C8 AMP 423 B 1 HETATM 16 N N7 AMP . . . D 3 45.596 -14.728 53.209 1 14.48 ? N7 AMP 423 B 1 HETATM 17 C C5 AMP . . . D 3 45.959 -14.363 54.5 1 9.78 ? C5 AMP 423 B 1 HETATM 18 C C6 AMP . . . D 3 45.251 -13.695 55.488 1 9.91 ? C6 AMP 423 B 1 HETATM 19 N N6 AMP . . . D 3 44.022 -13.283 55.233 1 3.74 ? N6 AMP 423 B 1 HETATM 20 N N1 AMP . . . D 3 45.851 -13.507 56.685 1 12.37 ? N1 AMP 423 B 1 HETATM 21 C C2 AMP . . . D 3 47.135 -13.867 56.847 1 8.72 ? C2 AMP 423 B 1 HETATM 22 N N3 AMP . . . D 3 47.929 -14.472 55.95 1 10.19 ? N3 AMP 423 B 1 HETATM 23 C C4 AMP . . . D 3 47.233 -14.754 54.804 1 11.72 ? C4 AMP 423 B 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #