data_1SET
#
_model_server_result.job_id            HClP5zDSx-byYbu8skGA8Q 
_model_server_result.datetime_utc      '2024-12-01 07:19:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1set 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":422}' 
#
_entry.id    1SET 
#
_exptl.entry_id    1SET 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              433.397 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109 
_cell.angle_gamma         90 
_cell.entry_id            1SET 
_cell.length_a            86.4 
_cell.length_b            126.3 
_cell.length_c            62.9 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1SET 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C13 H19 N7 O8 S' 
_chem_comp.formula_weight    433.397 
_chem_comp.id                SSA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N10 CA SSA sing 290 n n 
N10 HN11 SSA sing 291 n n 
N10 HN12 SSA sing 292 n n 
CA CB SSA sing 293 n n 
CA C9 SSA sing 294 n n 
CA HA SSA sing 295 n n 
CB OG SSA sing 296 n n 
CB HB1 SSA sing 297 n n 
CB HB2 SSA sing 298 n n 
OG HOG SSA sing 299 n n 
C9 O9 SSA doub 300 n n 
C9 N8 SSA sing 301 n n 
N8 S1 SSA sing 302 n n 
N8 HN8 SSA sing 303 n n 
S1 O1S SSA doub 304 n n 
S1 O2S SSA doub 305 n n 
S1 O5' SSA sing 306 n n 
O5' C5' SSA sing 307 n n 
C5' C4' SSA sing 308 n n 
C5' "H5'1" SSA sing 309 n n 
C5' "H5'2" SSA sing 310 n n 
C4' O4' SSA sing 311 n n 
C4' C3' SSA sing 312 n n 
C4' H4' SSA sing 313 n n 
O4' C1' SSA sing 314 n n 
C3' O3' SSA sing 315 n n 
C3' C2' SSA sing 316 n n 
C3' H3' SSA sing 317 n n 
O3' HO3' SSA sing 318 n n 
C2' O2' SSA sing 319 n n 
C2' C1' SSA sing 320 n n 
C2' H2' SSA sing 321 n n 
O2' HO2' SSA sing 322 n n 
C1' N9 SSA sing 323 n n 
C1' H1' SSA sing 324 n n 
N9 C8 SSA sing 325 n y 
N9 C4 SSA sing 326 n y 
C8 N7 SSA doub 327 n y 
C8 H8 SSA sing 328 n n 
N7 C5 SSA sing 329 n y 
C5 C6 SSA sing 330 n y 
C5 C4 SSA doub 331 n y 
C6 N6 SSA sing 332 n n 
C6 N1 SSA doub 333 n y 
N6 HN61 SSA sing 334 n n 
N6 HN62 SSA sing 335 n n 
N1 C2 SSA sing 336 n y 
C2 N3 SSA doub 337 n y 
C2 H2 SSA sing 338 n n 
N3 C4 SSA sing 339 n y 
#
_atom_sites.entry_id                     1SET 
_atom_sites.fract_transf_matrix[1][1]    0.011574 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003985 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007918 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016814 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SSA A 1 422 422 SSA SSA . 
D 2 SSA B 1 423 423 SSA SSA . 
E 3 HOH A 1 423 1 HOH HOH . 
E 3 HOH A 2 424 4 HOH HOH . 
E 3 HOH A 3 425 9 HOH HOH . 
E 3 HOH A 4 426 14 HOH HOH . 
E 3 HOH A 5 427 15 HOH HOH . 
E 3 HOH A 6 428 16 HOH HOH . 
E 3 HOH A 7 429 17 HOH HOH . 
E 3 HOH A 8 430 18 HOH HOH . 
E 3 HOH A 9 431 19 HOH HOH . 
E 3 HOH A 10 432 20 HOH HOH . 
E 3 HOH A 11 433 21 HOH HOH . 
E 3 HOH A 12 434 22 HOH HOH . 
E 3 HOH A 13 435 23 HOH HOH . 
E 3 HOH A 14 436 24 HOH HOH . 
E 3 HOH A 15 437 25 HOH HOH . 
E 3 HOH A 16 438 26 HOH HOH . 
E 3 HOH A 17 439 27 HOH HOH . 
E 3 HOH A 18 440 28 HOH HOH . 
E 3 HOH A 19 441 29 HOH HOH . 
E 3 HOH A 20 442 30 HOH HOH . 
E 3 HOH A 21 443 31 HOH HOH . 
E 3 HOH A 22 444 32 HOH HOH . 
E 3 HOH A 23 445 34 HOH HOH . 
E 3 HOH A 24 446 35 HOH HOH . 
E 3 HOH A 25 447 37 HOH HOH . 
E 3 HOH A 26 448 38 HOH HOH . 
E 3 HOH A 27 449 39 HOH HOH . 
E 3 HOH A 28 450 40 HOH HOH . 
E 3 HOH A 29 451 48 HOH HOH . 
E 3 HOH A 30 452 53 HOH HOH . 
E 3 HOH A 31 453 54 HOH HOH . 
E 3 HOH A 32 454 55 HOH HOH . 
E 3 HOH A 33 455 58 HOH HOH . 
E 3 HOH A 34 456 64 HOH HOH . 
E 3 HOH A 35 457 69 HOH HOH . 
E 3 HOH A 36 458 76 HOH HOH . 
E 3 HOH A 37 459 78 HOH HOH . 
E 3 HOH A 38 460 79 HOH HOH . 
E 3 HOH A 39 461 85 HOH HOH . 
E 3 HOH A 40 462 88 HOH HOH . 
E 3 HOH A 41 463 93 HOH HOH . 
E 3 HOH A 42 464 97 HOH HOH . 
E 3 HOH A 43 465 99 HOH HOH . 
E 3 HOH A 44 466 102 HOH HOH . 
E 3 HOH A 45 467 106 HOH HOH . 
E 3 HOH A 46 468 107 HOH HOH . 
E 3 HOH A 47 469 108 HOH HOH . 
E 3 HOH A 48 470 109 HOH HOH . 
E 3 HOH A 49 471 110 HOH HOH . 
E 3 HOH A 50 472 111 HOH HOH . 
E 3 HOH A 51 473 112 HOH HOH . 
E 3 HOH A 52 474 113 HOH HOH . 
E 3 HOH A 53 475 114 HOH HOH . 
E 3 HOH A 54 476 116 HOH HOH . 
E 3 HOH A 55 477 117 HOH HOH . 
E 3 HOH A 56 478 118 HOH HOH . 
E 3 HOH A 57 479 129 HOH HOH . 
E 3 HOH A 58 480 130 HOH HOH . 
E 3 HOH A 59 481 131 HOH HOH . 
E 3 HOH A 60 482 132 HOH HOH . 
E 3 HOH A 61 483 133 HOH HOH . 
E 3 HOH A 62 484 134 HOH HOH . 
E 3 HOH A 63 485 135 HOH HOH . 
E 3 HOH A 64 486 136 HOH HOH . 
E 3 HOH A 65 487 137 HOH HOH . 
E 3 HOH A 66 488 138 HOH HOH . 
E 3 HOH A 67 489 139 HOH HOH . 
E 3 HOH A 68 490 140 HOH HOH . 
E 3 HOH A 69 491 141 HOH HOH . 
E 3 HOH A 70 492 143 HOH HOH . 
E 3 HOH A 71 493 144 HOH HOH . 
E 3 HOH A 72 494 145 HOH HOH . 
E 3 HOH A 73 495 148 HOH HOH . 
E 3 HOH A 74 496 149 HOH HOH . 
E 3 HOH A 75 497 166 HOH HOH . 
E 3 HOH A 76 498 167 HOH HOH . 
E 3 HOH A 77 499 168 HOH HOH . 
E 3 HOH A 78 500 169 HOH HOH . 
E 3 HOH A 79 501 180 HOH HOH . 
E 3 HOH A 80 502 181 HOH HOH . 
E 3 HOH A 81 503 182 HOH HOH . 
F 3 HOH B 1 424 2 HOH HOH . 
F 3 HOH B 2 425 3 HOH HOH . 
F 3 HOH B 3 426 5 HOH HOH . 
F 3 HOH B 4 427 6 HOH HOH . 
F 3 HOH B 5 428 7 HOH HOH . 
F 3 HOH B 6 429 8 HOH HOH . 
F 3 HOH B 7 430 10 HOH HOH . 
F 3 HOH B 8 431 11 HOH HOH . 
F 3 HOH B 9 432 12 HOH HOH . 
F 3 HOH B 10 433 13 HOH HOH . 
F 3 HOH B 11 434 33 HOH HOH . 
F 3 HOH B 12 435 36 HOH HOH . 
F 3 HOH B 13 436 41 HOH HOH . 
F 3 HOH B 14 437 42 HOH HOH . 
F 3 HOH B 15 438 43 HOH HOH . 
F 3 HOH B 16 439 44 HOH HOH . 
F 3 HOH B 17 440 45 HOH HOH . 
F 3 HOH B 18 441 46 HOH HOH . 
F 3 HOH B 19 442 47 HOH HOH . 
F 3 HOH B 20 443 50 HOH HOH . 
F 3 HOH B 21 444 51 HOH HOH . 
F 3 HOH B 22 445 52 HOH HOH . 
F 3 HOH B 23 446 56 HOH HOH . 
F 3 HOH B 24 447 57 HOH HOH . 
F 3 HOH B 25 448 59 HOH HOH . 
F 3 HOH B 26 449 60 HOH HOH . 
F 3 HOH B 27 450 61 HOH HOH . 
F 3 HOH B 28 451 62 HOH HOH . 
F 3 HOH B 29 452 63 HOH HOH . 
F 3 HOH B 30 453 66 HOH HOH . 
F 3 HOH B 31 454 67 HOH HOH . 
F 3 HOH B 32 455 68 HOH HOH . 
F 3 HOH B 33 456 70 HOH HOH . 
F 3 HOH B 34 457 71 HOH HOH . 
F 3 HOH B 35 458 72 HOH HOH . 
F 3 HOH B 36 459 73 HOH HOH . 
F 3 HOH B 37 460 74 HOH HOH . 
F 3 HOH B 38 461 75 HOH HOH . 
F 3 HOH B 39 462 77 HOH HOH . 
F 3 HOH B 40 463 80 HOH HOH . 
F 3 HOH B 41 464 83 HOH HOH . 
F 3 HOH B 42 465 86 HOH HOH . 
F 3 HOH B 43 466 89 HOH HOH . 
F 3 HOH B 44 467 91 HOH HOH . 
F 3 HOH B 45 468 92 HOH HOH . 
F 3 HOH B 46 469 95 HOH HOH . 
F 3 HOH B 47 470 98 HOH HOH . 
F 3 HOH B 48 471 101 HOH HOH . 
F 3 HOH B 49 472 103 HOH HOH . 
F 3 HOH B 50 473 104 HOH HOH . 
F 3 HOH B 51 474 105 HOH HOH . 
F 3 HOH B 52 475 115 HOH HOH . 
F 3 HOH B 53 476 119 HOH HOH . 
F 3 HOH B 54 477 120 HOH HOH . 
F 3 HOH B 55 478 121 HOH HOH . 
F 3 HOH B 56 479 122 HOH HOH . 
F 3 HOH B 57 480 123 HOH HOH . 
F 3 HOH B 58 481 124 HOH HOH . 
F 3 HOH B 59 482 125 HOH HOH . 
F 3 HOH B 60 483 126 HOH HOH . 
F 3 HOH B 61 484 127 HOH HOH . 
F 3 HOH B 62 485 128 HOH HOH . 
F 3 HOH B 63 486 146 HOH HOH . 
F 3 HOH B 64 487 147 HOH HOH . 
F 3 HOH B 65 488 150 HOH HOH . 
F 3 HOH B 66 489 151 HOH HOH . 
F 3 HOH B 67 490 152 HOH HOH . 
F 3 HOH B 68 491 153 HOH HOH . 
F 3 HOH B 69 492 154 HOH HOH . 
F 3 HOH B 70 493 155 HOH HOH . 
F 3 HOH B 71 494 156 HOH HOH . 
F 3 HOH B 72 495 157 HOH HOH . 
F 3 HOH B 73 496 158 HOH HOH . 
F 3 HOH B 74 497 159 HOH HOH . 
F 3 HOH B 75 498 161 HOH HOH . 
F 3 HOH B 76 499 162 HOH HOH . 
F 3 HOH B 77 500 163 HOH HOH . 
F 3 HOH B 78 501 164 HOH HOH . 
F 3 HOH B 79 502 165 HOH HOH . 
F 3 HOH B 80 503 170 HOH HOH . 
F 3 HOH B 81 504 171 HOH HOH . 
F 3 HOH B 82 505 172 HOH HOH . 
F 3 HOH B 83 506 173 HOH HOH . 
F 3 HOH B 84 507 175 HOH HOH . 
F 3 HOH B 85 508 176 HOH HOH . 
F 3 HOH B 86 509 177 HOH HOH . 
F 3 HOH B 87 510 178 HOH HOH . 
F 3 HOH B 88 511 179 HOH HOH . 
F 3 HOH B 89 512 183 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N10 SSA . . . C 2 52.83 12.169 63.42 1 2 ? N10 SSA 422 A 1 
HETATM 2 C CA SSA . . . C 2 53.627 13.307 63.046 1 2.26 ? CA SSA 422 A 1 
HETATM 3 C CB SSA . . . C 2 55.114 13.049 63.257 1 3 ? CB SSA 422 A 1 
HETATM 4 O OG SSA . . . C 2 55.61 11.928 62.5 1 2 ? OG SSA 422 A 1 
HETATM 5 C C9 SSA . . . C 2 53.34 13.427 61.576 1 2 ? C9 SSA 422 A 1 
HETATM 6 O O9 SSA . . . C 2 52.755 12.546 60.944 1 2 ? O9 SSA 422 A 1 
HETATM 7 N N8 SSA . . . C 2 53.831 14.527 61.084 1 4.46 ? N8 SSA 422 A 1 
HETATM 8 S S1 SSA . . . C 2 53.995 14.825 59.513 1 2 ? S1 SSA 422 A 1 
HETATM 9 O O1S SSA . . . C 2 52.691 15.008 58.942 1 2 ? O1S SSA 422 A 1 
HETATM 10 O O2S SSA . . . C 2 54.776 16.018 59.435 1 4.19 ? O2S SSA 422 A 1 
HETATM 11 O O5' SSA . . . C 2 54.845 13.725 58.821 1 5.09 ? O5' SSA 422 A 1 
HETATM 12 C C5' SSA . . . C 2 56.113 13.36 59.413 1 2 ? C5' SSA 422 A 1 
HETATM 13 C C4' SSA . . . C 2 57.062 12.839 58.32 1 2.96 ? C4' SSA 422 A 1 
HETATM 14 O O4' SSA . . . C 2 56.555 11.853 57.39 1 2.73 ? O4' SSA 422 A 1 
HETATM 15 C C3' SSA . . . C 2 57.434 14.011 57.424 1 2 ? C3' SSA 422 A 1 
HETATM 16 O O3' SSA . . . C 2 58.372 14.779 58.168 1 3.71 ? O3' SSA 422 A 1 
HETATM 17 C C2' SSA . . . C 2 58.065 13.331 56.233 1 2 ? C2' SSA 422 A 1 
HETATM 18 O O2' SSA . . . C 2 59.34 12.811 56.624 1 2 ? O2' SSA 422 A 1 
HETATM 19 C C1' SSA . . . C 2 57.086 12.157 56.075 1 2 ? C1' SSA 422 A 1 
HETATM 20 N N9 SSA . . . C 2 56.036 12.437 55.051 1 2 ? N9 SSA 422 A 1 
HETATM 21 C C8 SSA . . . C 2 54.797 13.026 55.18 1 2 ? C8 SSA 422 A 1 
HETATM 22 N N7 SSA . . . C 2 54.066 12.988 54.103 1 2 ? N7 SSA 422 A 1 
HETATM 23 C C5 SSA . . . C 2 54.829 12.235 53.215 1 2 ? C5 SSA 422 A 1 
HETATM 24 C C6 SSA . . . C 2 54.595 11.775 51.913 1 2 ? C6 SSA 422 A 1 
HETATM 25 N N6 SSA . . . C 2 53.445 11.907 51.299 1 2 ? N6 SSA 422 A 1 
HETATM 26 N N1 SSA . . . C 2 55.601 11.17 51.276 1 3.5 ? N1 SSA 422 A 1 
HETATM 27 C C2 SSA . . . C 2 56.75 10.961 51.915 1 2.45 ? C2 SSA 422 A 1 
HETATM 28 N N3 SSA . . . C 2 57.068 11.234 53.172 1 2 ? N3 SSA 422 A 1 
HETATM 29 C C4 SSA . . . C 2 56.053 11.945 53.757 1 2.36 ? C4 SSA 422 A 1 
#
_model_server_stats.io_time_ms              69 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           29 
#