data_1SEU # _model_server_result.job_id iTC9iJ1pTzwkFtEhsBeONg _model_server_result.datetime_utc '2024-10-11 01:28:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1seu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":990}' # _entry.id 1SEU # _exptl.entry_id 1SEU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 519.46 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,10-DIHYDROXY-12-(BETA-D-GLUCOPYRANOSYL)-6,7,12,13-TETRAHYDROINDOLO[2,3-A]PYRROLO[3,4-C]CARBAZOLE-5,7-DIONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.71 _cell.angle_gamma 90 _cell.entry_id 1SEU _cell.length_a 57.382 _cell.length_b 115.965 _cell.length_c 73.547 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SEU _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C3' DT 10 B DT 10 1_555 D O3P PTR 550 A PTR 723 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? covale ? covale2 B O3' TGP 1 C TGP 11 1_555 B P DG 2 C DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.599 ? covale ? covale3 D C SER 549 A SER 722 1_555 D N PTR 550 A PTR 723 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale4 D C PTR 550 A PTR 723 1_555 D N LEU 551 A LEU 724 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? hydrog WATSON-CRICK hydrog1 A N1 DA 3 B DA 3 1_555 C N3 DT 20 D DT 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N6 DA 3 B DA 3 1_555 C O4 DT 20 D DT 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DA-DT PAIR' hydrog3 A N1 DA 4 B DA 4 1_555 C N3 DT 19 D DT 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DA 5 B DA 5 1_555 C N3 DT 18 D DT 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N6 DA 5 B DA 5 1_555 C O4 DT 18 D DT 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N1 DG 6 B DG 6 1_555 C N3 DC 17 D DC 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N2 DG 6 B DG 6 1_555 C O2 DC 17 D DC 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O6 DG 6 B DG 6 1_555 C N4 DC 17 D DC 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_8_PAIR hydrog9 A N1 DA 7 B DA 7 1_555 C N1 DG 15 D DG 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_8_PAIR hydrog10 A N6 DA 7 B DA 7 1_555 C O6 DG 15 D DG 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N1 DA 7 B DA 7 1_555 C N3 DT 16 D DT 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N6 DA 7 B DA 7 1_555 C O4 DT 16 D DT 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DG PAIR' hydrog13 A O2 DC 8 B DC 8 1_555 C N2 DG 15 D DG 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N3 DT 9 B DT 9 1_555 C N1 DA 14 D DA 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O4 DT 9 B DT 9 1_555 C N6 DA 14 D DA 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N3 DT 10 B DT 10 1_555 C N1 DA 13 D DA 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A O4 DT 10 B DT 10 1_555 C N6 DA 13 D DA 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B N1 TGP 1 C TGP 11 1_555 C N3 DC 12 D DC 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B N2 TGP 1 C TGP 11 1_555 C O2 DC 12 D DC 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B O6 TGP 1 C TGP 11 1_555 C N4 DC 12 D DC 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DC PAIR' hydrog21 B N1 DG 2 C DG 12 1_555 C N3 DC 11 D DC 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DA-DT PAIR' hydrog22 B N6 DA 4 C DA 14 1_555 C O4 DT 9 D DT 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 B N1 DA 5 C DA 15 1_555 C N3 DT 8 D DT 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 B N6 DA 5 C DA 15 1_555 C O4 DT 8 D DT 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 B N1 DA 6 C DA 16 1_555 C N3 DT 7 D DT 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 B N6 DA 6 C DA 16 1_555 C O4 DT 7 D DT 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 B N3 DT 8 C DT 18 1_555 C N1 DA 5 D DA 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 B O4 DT 8 C DT 18 1_555 C N6 DA 5 D DA 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 B N3 DT 9 C DT 19 1_555 C N1 DA 4 D DA 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 B O4 DT 9 C DT 19 1_555 C N6 DA 4 D DA 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-DA PAIR' hydrog31 B N3 DT 11 C DT 21 1_555 C N1 DA 2 D DA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-DA PAIR' hydrog32 B N3 DT 11 C DT 21 1_555 C N1 DA 3 D DA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C26 H21 N3 O9' _chem_comp.formula_weight 519.46 _chem_comp.id SA3 _chem_comp.mon_nstd_flag . _chem_comp.name 2,10-DIHYDROXY-12-(BETA-D-GLUCOPYRANOSYL)-6,7,12,13-TETRAHYDROINDOLO[2,3-A]PYRROLO[3,4-C]CARBAZOLE-5,7-DIONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C6 SA3 sing 453 n n O1 HO1 SA3 sing 454 n n C6 C5 SA3 doub 455 n y C6 C1 SA3 sing 456 n y C5 C4 SA3 sing 457 n y C5 H5 SA3 sing 458 n n C4 C3 SA3 doub 459 n y C4 H4 SA3 sing 460 n n C3 C2 SA3 sing 461 n y C3 C11 SA3 sing 462 n y C2 N9 SA3 sing 463 n y C2 C1 SA3 doub 464 n y N9 C10 SA3 sing 465 n y N9 C31 SA3 sing 466 n n C1 H1 SA3 sing 467 n n C11 C15 SA3 doub 468 n y C11 C10 SA3 sing 469 n y C15 C18 SA3 sing 470 n n C15 C14 SA3 sing 471 n y C18 O37 SA3 doub 472 n n C18 N17 SA3 sing 473 n n N17 C16 SA3 sing 474 n n N17 H17 SA3 sing 475 n n C14 C16 SA3 sing 476 n n C14 C13 SA3 doub 477 n y C16 O38 SA3 doub 478 n n C13 C21 SA3 sing 479 n y C13 C12 SA3 sing 480 n y C21 C20 SA3 doub 481 n y C21 C25 SA3 sing 482 n y C20 N19 SA3 sing 483 n y C20 C22 SA3 sing 484 n y N19 C12 SA3 sing 485 n y N19 H19 SA3 sing 486 n n C12 C10 SA3 doub 487 n y C25 C24 SA3 doub 488 n y C25 H25 SA3 sing 489 n n C24 C23 SA3 sing 490 n y C24 H24 SA3 sing 491 n n C23 C22 SA3 doub 492 n y C23 O2 SA3 sing 493 n n C22 H22 SA3 sing 494 n n O2 HO2 SA3 sing 495 n n C31 C32 SA3 sing 496 n n C31 O5 SA3 sing 497 n n C31 H31 SA3 sing 498 n n C32 O32 SA3 sing 499 n n C32 C33 SA3 sing 500 n n C32 H32 SA3 sing 501 n n O32 H6 SA3 sing 502 n n C33 O33 SA3 sing 503 n n C33 C34 SA3 sing 504 n n C33 H33 SA3 sing 505 n n O33 H3 SA3 sing 506 n n C34 O34 SA3 sing 507 n n C34 C35 SA3 sing 508 n n C34 H34 SA3 sing 509 n n O34 H2 SA3 sing 510 n n C35 C36 SA3 sing 511 n n C35 O5 SA3 sing 512 n n C35 H35 SA3 sing 513 n n C36 O36 SA3 sing 514 n n C36 H361 SA3 sing 515 n n C36 H362 SA3 sing 516 n n O36 H36 SA3 sing 517 n n # _atom_sites.entry_id 1SEU _atom_sites.fract_transf_matrix[1][1] 0.017427 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00113 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008623 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013625 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id E _pdbx_nonpoly_scheme.entity_id 5 _pdbx_nonpoly_scheme.mon_id SA3 _pdbx_nonpoly_scheme.pdb_strand_id D _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 990 _pdbx_nonpoly_scheme.auth_seq_num 990 _pdbx_nonpoly_scheme.pdb_mon_id SA3 _pdbx_nonpoly_scheme.auth_mon_id SA3 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 SA3 . . . E 5 20.268 -9.76 26.987 1 60.52 ? O1 SA3 990 D 1 HETATM 2 C C6 SA3 . . . E 5 20.659 -8.781 27.103 1 60.62 ? C6 SA3 990 D 1 HETATM 3 C C5 SA3 . . . E 5 19.747 -7.756 27.198 1 60.62 ? C5 SA3 990 D 1 HETATM 4 C C4 SA3 . . . E 5 20.19 -6.428 27.357 1 60.48 ? C4 SA3 990 D 1 HETATM 5 C C3 SA3 . . . E 5 21.546 -6.11 27.426 1 61.64 ? C3 SA3 990 D 1 HETATM 6 C C2 SA3 . . . E 5 22.598 -7.163 27.329 1 63.79 ? C2 SA3 990 D 1 HETATM 7 N N9 SA3 . . . E 5 23.847 -6.448 27.438 1 65.42 ? N9 SA3 990 D 1 HETATM 8 C C1 SA3 . . . E 5 22.098 -8.498 27.169 1 63.14 ? C1 SA3 990 D 1 HETATM 9 C C11 SA3 . . . E 5 22.12 -4.827 27.577 1 61.85 ? C11 SA3 990 D 1 HETATM 10 C C15 SA3 . . . E 5 21.601 -3.503 27.71 1 62.01 ? C15 SA3 990 D 1 HETATM 11 C C18 SA3 . . . E 5 20.229 -2.995 27.741 1 59.91 ? C18 SA3 990 D 1 HETATM 12 O O37 SA3 . . . E 5 19.205 -3.629 27.662 1 57.27 ? O37 SA3 990 D 1 HETATM 13 N N17 SA3 . . . E 5 20.306 -1.67 27.879 1 60.68 ? N17 SA3 990 D 1 HETATM 14 C C14 SA3 . . . E 5 22.471 -2.382 27.842 1 62.93 ? C14 SA3 990 D 1 HETATM 15 C C16 SA3 . . . E 5 21.59 -1.211 27.948 1 62.82 ? C16 SA3 990 D 1 HETATM 16 O O38 SA3 . . . E 5 21.93 -0.019 28.078 1 63.88 ? O38 SA3 990 D 1 HETATM 17 C C13 SA3 . . . E 5 23.896 -2.551 27.859 1 63.92 ? C13 SA3 990 D 1 HETATM 18 C C21 SA3 . . . E 5 25.084 -1.726 27.969 1 65.45 ? C21 SA3 990 D 1 HETATM 19 C C20 SA3 . . . E 5 26.275 -2.602 27.918 1 66.74 ? C20 SA3 990 D 1 HETATM 20 N N19 SA3 . . . E 5 25.786 -3.854 27.773 1 66.37 ? N19 SA3 990 D 1 HETATM 21 C C12 SA3 . . . E 5 24.423 -3.873 27.734 1 63.69 ? C12 SA3 990 D 1 HETATM 22 C C10 SA3 . . . E 5 23.532 -5.061 27.582 1 63.84 ? C10 SA3 990 D 1 HETATM 23 C C25 SA3 . . . E 5 25.248 -0.348 28.107 1 66.07 ? C25 SA3 990 D 1 HETATM 24 C C24 SA3 . . . E 5 26.573 0.176 28.192 1 68.46 ? C24 SA3 990 D 1 HETATM 25 C C23 SA3 . . . E 5 27.737 -0.67 28.149 1 69.77 ? C23 SA3 990 D 1 HETATM 26 C C22 SA3 . . . E 5 27.582 -2.099 28.008 1 68.42 ? C22 SA3 990 D 1 HETATM 27 O O2 SA3 . . . E 5 28.75 -0.215 28.223 1 70.76 ? O2 SA3 990 D 1 HETATM 28 C C31 SA3 . . . E 5 25.257 -6.852 27.412 1 66.8 ? C31 SA3 990 D 1 HETATM 29 C C32 SA3 . . . E 5 26.162 -7.817 28.209 1 67.55 ? C32 SA3 990 D 1 HETATM 30 O O32 SA3 . . . E 5 27.235 -7.114 28.799 1 61.88 ? O32 SA3 990 D 1 HETATM 31 C C33 SA3 . . . E 5 26.557 -8.847 27.161 1 69.77 ? C33 SA3 990 D 1 HETATM 32 O O33 SA3 . . . E 5 25.269 -9.264 26.728 1 74.39 ? O33 SA3 990 D 1 HETATM 33 C C34 SA3 . . . E 5 27.316 -8.246 25.921 1 72.78 ? C34 SA3 990 D 1 HETATM 34 O O34 SA3 . . . E 5 28.624 -7.858 26.269 1 72.43 ? O34 SA3 990 D 1 HETATM 35 C C35 SA3 . . . E 5 26.557 -7.021 25.347 1 73.93 ? C35 SA3 990 D 1 HETATM 36 C C36 SA3 . . . E 5 25.408 -7.401 24.376 1 74.68 ? C36 SA3 990 D 1 HETATM 37 O O36 SA3 . . . E 5 25.931 -8.175 23.303 1 78.88 ? O36 SA3 990 D 1 HETATM 38 O O5 SA3 . . . E 5 26.057 -6.228 26.422 1 72.04 ? O5 SA3 990 D 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 38 #