data_1SFC # _model_server_result.job_id eKjNw_yWZYuiu7lkZoPT3w _model_server_result.datetime_utc '2024-11-15 02:25:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1sfc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":928}' # _entry.id 1SFC # _exptl.entry_id 1SFC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1SFC _cell.length_a 98.715 _cell.length_b 111.071 _cell.length_c 198.844 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SFC _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 PISA tetrameric 4 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,M,N,O,P,Q,R,S,T,GA,HA,IA,JA 1 1 E,F,G,H,U,V,W,X,Y,Z,AA,KA,LA 2 1 I,J,K,L,BA,CA,DA,EA,FA,MA,NA,OA 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 O N N ? 6 P N N ? 6 W N N ? 6 AA N N ? 6 BA N N ? 6 EA N N ? 6 FA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 68 A ASP 68 1_555 M SR SR . A SR 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc2 A O SER 75 A SER 75 1_555 N SR SR . A SR 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc3 A OG SER 75 A SER 75 1_555 N SR SR . A SR 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? metalc ? metalc4 A OE1 GLU 78 A GLU 78 1_555 N SR SR . A SR 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.959 ? metalc ? metalc5 A OG1 THR 79 A THR 79 1_555 N SR SR . A SR 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.669 ? metalc ? metalc6 M SR SR . A SR 289 1_555 GA O HOH . A HOH 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc7 M SR SR . A SR 289 1_555 I O SER 75 I SER 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc8 M SR SR . A SR 289 1_555 I OG SER 75 I SER 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc9 M SR SR . A SR 289 1_555 I OE1 GLU 78 I GLU 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc10 M SR SR . A SR 289 1_555 I OG1 THR 79 I THR 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc11 M SR SR . A SR 289 1_555 MA O HOH . I HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc12 M SR SR . A SR 289 1_555 MA O HOH . I HOH 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc13 N SR SR . A SR 290 1_555 GA O HOH . A HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc14 N SR SR . A SR 290 1_555 I OD1 ASP 68 I ASP 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? metalc ? metalc15 B OD2 ASP 39 B ASP 218 1_555 Q SR SR . B SR 294 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.387 ? metalc ? metalc16 C OD1 ASP 51 C ASP 51 3_555 S SR SR . C SR 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.811 ? metalc ? metalc17 C OD2 ASP 51 C ASP 51 3_555 S SR SR . C SR 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.971 ? metalc ? metalc18 C OE2 GLU 55 C GLU 55 3_555 R SR SR . C SR 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc19 C OE1 GLU 55 C GLU 55 3_555 R SR SR . C SR 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.065 ? metalc ? metalc20 C OE2 GLU 55 C GLU 55 3_555 S SR SR . C SR 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.105 ? metalc ? metalc21 R SR SR . C SR 295 1_555 IA O HOH . C HOH 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.997 ? metalc ? metalc22 S SR SR . C SR 296 1_555 IA O HOH . C HOH 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.996 ? metalc ? metalc23 T SR SR . D SR 288 1_555 JA O HOH . D HOH 516 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc24 F OD1 ASP 35 F ASP 214 1_555 V SR SR . F SR 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.043 ? metalc ? metalc25 F OD2 ASP 35 F ASP 214 1_555 V SR SR . F SR 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.807 ? metalc ? metalc26 F OD2 ASP 39 F ASP 218 1_555 V SR SR . F SR 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.074 ? metalc ? metalc27 F OD1 ASP 39 F ASP 218 1_555 V SR SR . F SR 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? metalc ? metalc28 F OD1 ASP 63 F ASP 242 1_555 U SR SR . F SR 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? metalc ? metalc29 F OE1 GLU 66 F GLU 245 1_555 U SR SR . F SR 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? metalc ? metalc30 U SR SR . F SR 291 1_555 KA O HOH . F HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? metalc ? metalc31 U SR SR . F SR 291 1_555 KA O HOH . F HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.1 ? metalc ? metalc32 U SR SR . F SR 291 1_555 KA O HOH . F HOH 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.092 ? metalc ? metalc33 U SR SR . F SR 291 1_555 KA O HOH . F HOH 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.178 ? metalc ? metalc34 U SR SR . F SR 291 1_555 J OD1 ASP 63 J ASP 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc35 U SR SR . F SR 291 1_555 J OE2 GLU 66 J GLU 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.781 ? metalc ? metalc36 U SR SR . F SR 291 1_555 NA O HOH . J HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? metalc ? metalc37 V SR SR . F SR 297 1_555 KA O HOH . F HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc38 G OD1 ASP 41 G ASP 41 4_565 DA SR SR . K SR 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? metalc ? metalc39 G OD2 ASP 51 G ASP 51 1_555 X SR SR . G SR 298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? metalc ? metalc40 G OE2 GLU 55 G GLU 55 1_555 X SR SR . G SR 298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc41 G OE2 GLU 55 G GLU 55 1_555 Z SR SR . G SR 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? metalc ? metalc42 G OE1 GLU 55 G GLU 55 1_555 Z SR SR . G SR 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.285 ? metalc ? metalc43 X SR SR . G SR 298 1_555 Y SR SR . G SR 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.306 ? metalc ? metalc44 X SR SR . G SR 298 1_555 K OD2 ASP 51 K ASP 51 4_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? metalc ? metalc45 X SR SR . G SR 298 1_555 K OE2 GLU 55 K GLU 55 4_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc46 X SR SR . G SR 298 1_555 K OE1 GLU 55 K GLU 55 4_565 ? ? ? ? ? ? ? ? ? ? ? ? 3.287 ? metalc ? metalc47 Y SR SR . G SR 299 1_555 K OE1 GLU 52 K GLU 52 4_565 ? ? ? ? ? ? ? ? ? ? ? ? 3.025 ? metalc ? metalc48 Y SR SR . G SR 299 1_555 K OE1 GLU 55 K GLU 55 4_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.823 ? metalc ? metalc49 Z SR SR . G SR 300 1_555 K OD1 ASP 51 K ASP 51 4_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? metalc ? metalc50 Z SR SR . G SR 300 1_555 K OE2 GLU 55 K GLU 55 4_565 ? ? ? ? ? ? ? ? ? ? ? ? 3.286 ? metalc ? metalc51 K OE2 GLU 37 K GLU 37 1_555 DA SR SR . K SR 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.993 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 224 n n C1 H11 MPD sing 225 n n C1 H12 MPD sing 226 n n C1 H13 MPD sing 227 n n C2 O2 MPD sing 228 n n C2 CM MPD sing 229 n n C2 C3 MPD sing 230 n n O2 HO2 MPD sing 231 n n CM HM1 MPD sing 232 n n CM HM2 MPD sing 233 n n CM HM3 MPD sing 234 n n C3 C4 MPD sing 235 n n C3 H31 MPD sing 236 n n C3 H32 MPD sing 237 n n C4 O4 MPD sing 238 n n C4 C5 MPD sing 239 n n C4 H4 MPD sing 240 n n O4 HO4 MPD sing 241 n n C5 H51 MPD sing 242 n n C5 H52 MPD sing 243 n n C5 H53 MPD sing 244 n n # _atom_sites.entry_id 1SFC _atom_sites.fract_transf_matrix[1][1] 0.01013 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009003 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005029 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 5 SR A 1 289 289 SR SR . N 5 SR A 1 290 290 SR SR . O 6 MPD A 1 927 927 MPD MPD . P 6 MPD A 1 928 928 MPD MPD . Q 5 SR B 1 294 294 SR SR . R 5 SR C 1 295 295 SR SR . S 5 SR C 1 296 296 SR SR . T 5 SR D 1 288 288 SR SR . U 5 SR F 1 291 291 SR SR . V 5 SR F 1 297 297 SR SR . W 6 MPD F 1 926 926 MPD MPD . X 5 SR G 1 298 298 SR SR . Y 5 SR G 1 299 299 SR SR . Z 5 SR G 1 300 300 SR SR . AA 6 MPD G 1 932 932 MPD MPD . BA 6 MPD I 1 930 930 MPD MPD . CA 5 SR J 1 292 292 SR SR . DA 5 SR K 1 293 293 SR SR . EA 6 MPD K 1 929 929 MPD MPD . FA 6 MPD K 1 931 931 MPD MPD . GA 7 HOH A 1 507 507 HOH HOH . GA 7 HOH A 2 513 513 HOH HOH . HA 7 HOH B 1 505 505 HOH HOH . HA 7 HOH B 2 515 515 HOH HOH . IA 7 HOH C 1 519 519 HOH HOH . JA 7 HOH D 1 516 516 HOH HOH . KA 7 HOH F 1 501 501 HOH HOH . KA 7 HOH F 2 504 504 HOH HOH . KA 7 HOH F 3 509 509 HOH HOH . KA 7 HOH F 4 511 511 HOH HOH . KA 7 HOH F 5 512 512 HOH HOH . LA 7 HOH G 1 503 503 HOH HOH . MA 7 HOH I 1 502 502 HOH HOH . MA 7 HOH I 2 506 506 HOH HOH . MA 7 HOH I 3 510 510 HOH HOH . NA 7 HOH J 1 508 508 HOH HOH . NA 7 HOH J 2 514 514 HOH HOH . NA 7 HOH J 3 517 517 HOH HOH . OA 7 HOH K 1 518 518 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . P 6 35.073 24.531 -5.368 1 55.38 ? C1 MPD 928 A 1 HETATM 2 C C2 MPD . . . P 6 36.513 24.159 -5.146 1 55.22 ? C2 MPD 928 A 1 HETATM 3 O O2 MPD . . . P 6 36.683 24.513 -3.694 1 54.9 ? O2 MPD 928 A 1 HETATM 4 C CM MPD . . . P 6 37.06 22.742 -5.052 1 56.24 ? CM MPD 928 A 1 HETATM 5 C C3 MPD . . . P 6 37.47 25.039 -6.047 1 54.07 ? C3 MPD 928 A 1 HETATM 6 C C4 MPD . . . P 6 37.11 26.458 -6.254 1 51.93 ? C4 MPD 928 A 1 HETATM 7 O O4 MPD . . . P 6 37.172 26.955 -4.922 1 51.59 ? O4 MPD 928 A 1 HETATM 8 C C5 MPD . . . P 6 38.171 27.104 -7.172 1 52.55 ? C5 MPD 928 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #