data_1SFJ # _model_server_result.job_id YVGBJmJMAjSOrNXK9fwszQ _model_server_result.datetime_utc '2024-11-02 17:37:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1sfj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":239}' # _entry.id 1SFJ # _exptl.entry_id 1SFJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 174.151 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-DEHYDROSHIKIMATE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1SFJ _cell.length_a 76.58 _cell.length_b 76.58 _cell.length_c 172.44 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SFJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 160 A LYS 160 1_555 C C3 DHK . A DHK 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale2 B NZ LYS 160 B LYS 160 1_555 D C3 DHK . B DHK 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? # _chem_comp.formula 'C7 H10 O5' _chem_comp.formula_weight 174.151 _chem_comp.id DHK _chem_comp.mon_nstd_flag . _chem_comp.name 3-DEHYDROSHIKIMATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 DHK doub 83 n n C2 C1 DHK sing 84 n n C2 H2 DHK sing 85 n n C3 O3 DHK sing 86 n n C3 C4 DHK sing 87 n n O3 H3 DHK sing 88 n n C4 O4 DHK sing 89 n n C4 C5 DHK sing 90 n n C4 H4 DHK sing 91 n n O4 HA DHK sing 92 n n C5 C6 DHK sing 93 n n C5 O5 DHK sing 94 n n C5 H5 DHK sing 95 n n C1 C6 DHK sing 96 n n C1 C DHK sing 97 n n C1 H1 DHK sing 98 n n C6 H6C1 DHK sing 99 n n C6 H6C2 DHK sing 100 n n C O1 DHK doub 101 n n C O2 DHK sing 102 n n O2 HC DHK sing 103 n n O5 HB DHK sing 104 n n # _atom_sites.entry_id 1SFJ _atom_sites.fract_transf_matrix[1][1] 0.013058 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013058 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005799 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DHK A 1 239 239 DHK DHK . D 2 DHK B 1 239 239 DHK DHK . E 3 HOH A 1 240 1 HOH HOH . E 3 HOH A 2 241 4 HOH HOH . E 3 HOH A 3 242 5 HOH HOH . E 3 HOH A 4 243 7 HOH HOH . E 3 HOH A 5 244 9 HOH HOH . E 3 HOH A 6 245 19 HOH HOH . E 3 HOH A 7 246 21 HOH HOH . E 3 HOH A 8 247 24 HOH HOH . E 3 HOH A 9 248 25 HOH HOH . E 3 HOH A 10 249 31 HOH HOH . E 3 HOH A 11 250 36 HOH HOH . E 3 HOH A 12 251 37 HOH HOH . E 3 HOH A 13 252 40 HOH HOH . E 3 HOH A 14 253 41 HOH HOH . E 3 HOH A 15 254 43 HOH HOH . E 3 HOH A 16 255 44 HOH HOH . E 3 HOH A 17 256 51 HOH HOH . E 3 HOH A 18 257 52 HOH HOH . E 3 HOH A 19 258 55 HOH HOH . E 3 HOH A 20 259 60 HOH HOH . E 3 HOH A 21 260 61 HOH HOH . E 3 HOH A 22 261 64 HOH HOH . E 3 HOH A 23 262 67 HOH HOH . E 3 HOH A 24 263 69 HOH HOH . E 3 HOH A 25 264 71 HOH HOH . E 3 HOH A 26 265 76 HOH HOH . E 3 HOH A 27 266 82 HOH HOH . E 3 HOH A 28 267 84 HOH HOH . E 3 HOH A 29 268 85 HOH HOH . E 3 HOH A 30 269 91 HOH HOH . E 3 HOH A 31 270 99 HOH HOH . E 3 HOH A 32 271 100 HOH HOH . E 3 HOH A 33 272 113 HOH HOH . E 3 HOH A 34 273 116 HOH HOH . E 3 HOH A 35 274 117 HOH HOH . E 3 HOH A 36 275 119 HOH HOH . E 3 HOH A 37 276 120 HOH HOH . E 3 HOH A 38 277 121 HOH HOH . E 3 HOH A 39 278 123 HOH HOH . E 3 HOH A 40 279 124 HOH HOH . E 3 HOH A 41 280 125 HOH HOH . E 3 HOH A 42 281 130 HOH HOH . E 3 HOH A 43 282 132 HOH HOH . E 3 HOH A 44 283 133 HOH HOH . E 3 HOH A 45 284 134 HOH HOH . E 3 HOH A 46 285 136 HOH HOH . E 3 HOH A 47 286 137 HOH HOH . E 3 HOH A 48 287 138 HOH HOH . E 3 HOH A 49 288 144 HOH HOH . E 3 HOH A 50 289 147 HOH HOH . E 3 HOH A 51 290 148 HOH HOH . E 3 HOH A 52 291 149 HOH HOH . E 3 HOH A 53 292 157 HOH HOH . E 3 HOH A 54 293 160 HOH HOH . E 3 HOH A 55 294 161 HOH HOH . E 3 HOH A 56 295 162 HOH HOH . E 3 HOH A 57 296 163 HOH HOH . E 3 HOH A 58 297 164 HOH HOH . E 3 HOH A 59 298 165 HOH HOH . E 3 HOH A 60 299 166 HOH HOH . E 3 HOH A 61 300 173 HOH HOH . E 3 HOH A 62 301 174 HOH HOH . E 3 HOH A 63 302 175 HOH HOH . E 3 HOH A 64 303 180 HOH HOH . E 3 HOH A 65 304 182 HOH HOH . E 3 HOH A 66 305 183 HOH HOH . E 3 HOH A 67 306 187 HOH HOH . E 3 HOH A 68 307 189 HOH HOH . E 3 HOH A 69 308 193 HOH HOH . E 3 HOH A 70 309 197 HOH HOH . E 3 HOH A 71 310 200 HOH HOH . E 3 HOH A 72 311 202 HOH HOH . E 3 HOH A 73 312 204 HOH HOH . E 3 HOH A 74 313 205 HOH HOH . E 3 HOH A 75 314 207 HOH HOH . E 3 HOH A 76 315 208 HOH HOH . E 3 HOH A 77 316 209 HOH HOH . E 3 HOH A 78 317 211 HOH HOH . E 3 HOH A 79 318 212 HOH HOH . E 3 HOH A 80 319 213 HOH HOH . E 3 HOH A 81 320 214 HOH HOH . E 3 HOH A 82 321 218 HOH HOH . E 3 HOH A 83 322 220 HOH HOH . E 3 HOH A 84 323 221 HOH HOH . E 3 HOH A 85 324 223 HOH HOH . E 3 HOH A 86 325 225 HOH HOH . E 3 HOH A 87 326 226 HOH HOH . E 3 HOH A 88 327 228 HOH HOH . E 3 HOH A 89 328 229 HOH HOH . E 3 HOH A 90 329 230 HOH HOH . E 3 HOH A 91 330 232 HOH HOH . E 3 HOH A 92 331 233 HOH HOH . E 3 HOH A 93 332 235 HOH HOH . E 3 HOH A 94 333 237 HOH HOH . E 3 HOH A 95 334 239 HOH HOH . E 3 HOH A 96 335 244 HOH HOH . E 3 HOH A 97 336 245 HOH HOH . E 3 HOH A 98 337 246 HOH HOH . E 3 HOH A 99 338 249 HOH HOH . E 3 HOH A 100 339 251 HOH HOH . E 3 HOH A 101 340 252 HOH HOH . E 3 HOH A 102 341 254 HOH HOH . E 3 HOH A 103 342 256 HOH HOH . E 3 HOH A 104 343 258 HOH HOH . E 3 HOH A 105 344 261 HOH HOH . E 3 HOH A 106 345 262 HOH HOH . E 3 HOH A 107 346 263 HOH HOH . E 3 HOH A 108 347 264 HOH HOH . E 3 HOH A 109 348 270 HOH HOH . E 3 HOH A 110 349 271 HOH HOH . E 3 HOH A 111 350 277 HOH HOH . E 3 HOH A 112 351 278 HOH HOH . E 3 HOH A 113 352 285 HOH HOH . E 3 HOH A 114 353 286 HOH HOH . E 3 HOH A 115 354 287 HOH HOH . E 3 HOH A 116 355 288 HOH HOH . E 3 HOH A 117 356 290 HOH HOH . E 3 HOH A 118 357 293 HOH HOH . E 3 HOH A 119 358 296 HOH HOH . E 3 HOH A 120 359 298 HOH HOH . E 3 HOH A 121 360 301 HOH HOH . E 3 HOH A 122 361 305 HOH HOH . E 3 HOH A 123 362 306 HOH HOH . E 3 HOH A 124 363 307 HOH HOH . E 3 HOH A 125 364 308 HOH HOH . E 3 HOH A 126 365 310 HOH HOH . E 3 HOH A 127 366 313 HOH HOH . F 3 HOH B 1 240 158 HOH HOH . F 3 HOH B 2 241 6 HOH HOH . F 3 HOH B 3 242 8 HOH HOH . F 3 HOH B 4 243 11 HOH HOH . F 3 HOH B 5 244 12 HOH HOH . F 3 HOH B 6 245 13 HOH HOH . F 3 HOH B 7 246 15 HOH HOH . F 3 HOH B 8 247 17 HOH HOH . F 3 HOH B 9 248 18 HOH HOH . F 3 HOH B 10 249 22 HOH HOH . F 3 HOH B 11 250 26 HOH HOH . F 3 HOH B 12 251 27 HOH HOH . F 3 HOH B 13 252 28 HOH HOH . F 3 HOH B 14 253 29 HOH HOH . F 3 HOH B 15 254 30 HOH HOH . F 3 HOH B 16 255 32 HOH HOH . F 3 HOH B 17 256 35 HOH HOH . F 3 HOH B 18 257 39 HOH HOH . F 3 HOH B 19 258 42 HOH HOH . F 3 HOH B 20 259 45 HOH HOH . F 3 HOH B 21 260 46 HOH HOH . F 3 HOH B 22 261 47 HOH HOH . F 3 HOH B 23 262 48 HOH HOH . F 3 HOH B 24 263 49 HOH HOH . F 3 HOH B 25 264 54 HOH HOH . F 3 HOH B 26 265 56 HOH HOH . F 3 HOH B 27 266 57 HOH HOH . F 3 HOH B 28 267 58 HOH HOH . F 3 HOH B 29 268 59 HOH HOH . F 3 HOH B 30 269 63 HOH HOH . F 3 HOH B 31 270 65 HOH HOH . F 3 HOH B 32 271 70 HOH HOH . F 3 HOH B 33 272 72 HOH HOH . F 3 HOH B 34 273 73 HOH HOH . F 3 HOH B 35 274 74 HOH HOH . F 3 HOH B 36 275 78 HOH HOH . F 3 HOH B 37 276 79 HOH HOH . F 3 HOH B 38 277 80 HOH HOH . F 3 HOH B 39 278 81 HOH HOH . F 3 HOH B 40 279 83 HOH HOH . F 3 HOH B 41 280 86 HOH HOH . F 3 HOH B 42 281 88 HOH HOH . F 3 HOH B 43 282 90 HOH HOH . F 3 HOH B 44 283 92 HOH HOH . F 3 HOH B 45 284 93 HOH HOH . F 3 HOH B 46 285 94 HOH HOH . F 3 HOH B 47 286 95 HOH HOH . F 3 HOH B 48 287 96 HOH HOH . F 3 HOH B 49 288 97 HOH HOH . F 3 HOH B 50 289 98 HOH HOH . F 3 HOH B 51 290 101 HOH HOH . F 3 HOH B 52 291 104 HOH HOH . F 3 HOH B 53 292 105 HOH HOH . F 3 HOH B 54 293 107 HOH HOH . F 3 HOH B 55 294 109 HOH HOH . F 3 HOH B 56 295 111 HOH HOH . F 3 HOH B 57 296 112 HOH HOH . F 3 HOH B 58 297 114 HOH HOH . F 3 HOH B 59 298 115 HOH HOH . F 3 HOH B 60 299 122 HOH HOH . F 3 HOH B 61 300 126 HOH HOH . F 3 HOH B 62 301 127 HOH HOH . F 3 HOH B 63 302 129 HOH HOH . F 3 HOH B 64 303 131 HOH HOH . F 3 HOH B 65 304 135 HOH HOH . F 3 HOH B 66 305 140 HOH HOH . F 3 HOH B 67 306 141 HOH HOH . F 3 HOH B 68 307 143 HOH HOH . F 3 HOH B 69 308 146 HOH HOH . F 3 HOH B 70 309 150 HOH HOH . F 3 HOH B 71 310 151 HOH HOH . F 3 HOH B 72 311 153 HOH HOH . F 3 HOH B 73 312 154 HOH HOH . F 3 HOH B 74 313 155 HOH HOH . F 3 HOH B 75 314 156 HOH HOH . F 3 HOH B 76 315 159 HOH HOH . F 3 HOH B 77 316 167 HOH HOH . F 3 HOH B 78 317 169 HOH HOH . F 3 HOH B 79 318 170 HOH HOH . F 3 HOH B 80 319 171 HOH HOH . F 3 HOH B 81 320 177 HOH HOH . F 3 HOH B 82 321 178 HOH HOH . F 3 HOH B 83 322 179 HOH HOH . F 3 HOH B 84 323 185 HOH HOH . F 3 HOH B 85 324 188 HOH HOH . F 3 HOH B 86 325 190 HOH HOH . F 3 HOH B 87 326 192 HOH HOH . F 3 HOH B 88 327 194 HOH HOH . F 3 HOH B 89 328 195 HOH HOH . F 3 HOH B 90 329 196 HOH HOH . F 3 HOH B 91 330 198 HOH HOH . F 3 HOH B 92 331 199 HOH HOH . F 3 HOH B 93 332 201 HOH HOH . F 3 HOH B 94 333 203 HOH HOH . F 3 HOH B 95 334 206 HOH HOH . F 3 HOH B 96 335 215 HOH HOH . F 3 HOH B 97 336 216 HOH HOH . F 3 HOH B 98 337 217 HOH HOH . F 3 HOH B 99 338 219 HOH HOH . F 3 HOH B 100 339 224 HOH HOH . F 3 HOH B 101 340 227 HOH HOH . F 3 HOH B 102 341 231 HOH HOH . F 3 HOH B 103 342 234 HOH HOH . F 3 HOH B 104 343 236 HOH HOH . F 3 HOH B 105 344 238 HOH HOH . F 3 HOH B 106 345 240 HOH HOH . F 3 HOH B 107 346 241 HOH HOH . F 3 HOH B 108 347 242 HOH HOH . F 3 HOH B 109 348 248 HOH HOH . F 3 HOH B 110 349 259 HOH HOH . F 3 HOH B 111 350 265 HOH HOH . F 3 HOH B 112 351 266 HOH HOH . F 3 HOH B 113 352 267 HOH HOH . F 3 HOH B 114 353 268 HOH HOH . F 3 HOH B 115 354 269 HOH HOH . F 3 HOH B 116 355 272 HOH HOH . F 3 HOH B 117 356 273 HOH HOH . F 3 HOH B 118 357 274 HOH HOH . F 3 HOH B 119 358 275 HOH HOH . F 3 HOH B 120 359 280 HOH HOH . F 3 HOH B 121 360 281 HOH HOH . F 3 HOH B 122 361 282 HOH HOH . F 3 HOH B 123 362 284 HOH HOH . F 3 HOH B 124 363 292 HOH HOH . F 3 HOH B 125 364 294 HOH HOH . F 3 HOH B 126 365 295 HOH HOH . F 3 HOH B 127 366 297 HOH HOH . F 3 HOH B 128 367 299 HOH HOH . F 3 HOH B 129 368 300 HOH HOH . F 3 HOH B 130 369 302 HOH HOH . F 3 HOH B 131 370 303 HOH HOH . F 3 HOH B 132 371 304 HOH HOH . F 3 HOH B 133 372 311 HOH HOH . F 3 HOH B 134 373 314 HOH HOH . F 3 HOH B 135 374 315 HOH HOH . F 3 HOH B 136 375 316 HOH HOH . F 3 HOH B 137 376 317 HOH HOH . F 3 HOH B 138 377 318 HOH HOH . F 3 HOH B 139 378 319 HOH HOH . F 3 HOH B 140 379 320 HOH HOH . F 3 HOH B 141 380 321 HOH HOH . F 3 HOH B 142 381 322 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 DHK . . . D 2 95.991 17.655 -107.844 1 46.02 ? C2 DHK 239 B 1 HETATM 2 C C3 DHK . . . D 2 94.766 18.535 -107.957 1 40.23 ? C3 DHK 239 B 1 HETATM 3 C C4 DHK . . . D 2 94.753 19.497 -109.182 1 46.33 ? C4 DHK 239 B 1 HETATM 4 O O4 DHK . . . D 2 94.065 20.719 -108.93 1 43.01 ? O4 DHK 239 B 1 HETATM 5 C C5 DHK . . . D 2 96.125 19.71 -109.841 1 47.34 ? C5 DHK 239 B 1 HETATM 6 C C1 DHK . . . D 2 96.897 17.548 -108.82 1 46.75 ? C1 DHK 239 B 1 HETATM 7 C C6 DHK . . . D 2 96.78 18.364 -110.144 1 47.8 ? C6 DHK 239 B 1 HETATM 8 C C DHK . . . D 2 97.992 16.5 -108.753 1 52.82 ? C DHK 239 B 1 HETATM 9 O O1 DHK . . . D 2 98.834 16.547 -107.82 1 41.87 ? O1 DHK 239 B 1 HETATM 10 O O2 DHK . . . D 2 98.005 15.615 -109.644 1 32.3 ? O2 DHK 239 B 1 HETATM 11 O O5 DHK . . . D 2 95.99 20.51 -111.027 1 46.03 ? O5 DHK 239 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 11 #