data_1SFK # _model_server_result.job_id tZdmz7yX5wOTa1r8xmOPNA _model_server_result.datetime_utc '2025-06-26 22:04:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1sfk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":501}' # _entry.id 1SFK # _exptl.entry_id 1SFK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1SFK _cell.length_a 85.655 _cell.length_b 85.655 _cell.length_c 214.384 _cell.Z_PDB 64 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SFK _symmetry.cell_setting ? _symmetry.Int_Tables_number 80 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS tetrameric 4 author_and_software_defined_assembly 1 PQS tetrameric 4 author_and_software_defined_assembly 2 PISA octameric 8 software_defined_assembly 3 PISA octameric 8 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L,M,N,O,V,W,X,Y 1 1 E,F,G,H,P,Q,R,S,T,U,Z,AA,BA 2 1 A,B,I,J,K,L,V,W 3 1,2 C,D,M,N,O,X,Y 3 3,4 E,F,P,Q,R,Z 4 1,5 G,H,S,T,U,AA,BA 4 3,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 85.655 0 3 'crystal symmetry operation' 3_655 -y+1,x+1/2,z+1/4 0 -1 0 1 0 0 0 0 1 85.655 42.8275 53.596 4 'crystal symmetry operation' 8_455 y-1,-x+1/2,z+1/4 0 1 0 -1 0 0 0 0 1 -85.655 42.8275 53.596 5 'crystal symmetry operation' 6_675 -x+1,-y+2,z -1 0 0 0 -1 0 0 0 1 85.655 171.31 0 6 'crystal symmetry operation' 8_565 y,-x+3/2,z+1/4 0 1 0 -1 0 0 0 0 1 0 128.4825 53.596 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 L N N ? 5 O N N ? 5 R N N ? 5 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 22 A THR 43 1_555 I CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? metalc ? metalc2 A OG1 THR 22 A THR 43 6_565 I CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? metalc ? metalc3 I CA CA . A CA 101 1_555 K O4 PO4 . A PO4 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc4 I CA CA . A CA 101 1_555 K O4 PO4 . A PO4 701 6_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc5 D OG1 THR 22 D THR 43 1_555 M CA CA . D CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.263 ? metalc ? metalc6 D OG1 THR 22 D THR 43 6_575 M CA CA . D CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.261 ? metalc ? metalc7 F OG1 THR 22 F THR 43 1_555 P CA CA . F CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? metalc ? metalc8 F OG1 THR 22 F THR 43 6_675 P CA CA . F CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.907 ? metalc ? metalc9 G OG1 THR 22 G THR 43 1_555 S CA CA . G CA 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.78 ? metalc ? metalc10 G OG1 THR 22 G THR 43 6_665 S CA CA . G CA 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 224 n n O1 HO1 PG4 sing 225 n n C1 C2 PG4 sing 226 n n C1 H11 PG4 sing 227 n n C1 H12 PG4 sing 228 n n C2 O2 PG4 sing 229 n n C2 H21 PG4 sing 230 n n C2 H22 PG4 sing 231 n n O2 C3 PG4 sing 232 n n C3 C4 PG4 sing 233 n n C3 H31 PG4 sing 234 n n C3 H32 PG4 sing 235 n n C4 O3 PG4 sing 236 n n C4 H41 PG4 sing 237 n n C4 H42 PG4 sing 238 n n O3 C5 PG4 sing 239 n n C5 C6 PG4 sing 240 n n C5 H51 PG4 sing 241 n n C5 H52 PG4 sing 242 n n C6 O4 PG4 sing 243 n n C6 H61 PG4 sing 244 n n C6 H62 PG4 sing 245 n n O4 C7 PG4 sing 246 n n C7 C8 PG4 sing 247 n n C7 H71 PG4 sing 248 n n C7 H72 PG4 sing 249 n n C8 O5 PG4 sing 250 n n C8 H81 PG4 sing 251 n n C8 H82 PG4 sing 252 n n O5 HO5 PG4 sing 253 n n # _atom_sites.entry_id 1SFK _atom_sites.fract_transf_matrix[1][1] 0.011675 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011675 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004665 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 CA A 1 101 101 CA CA . J 3 CL A 1 201 201 CL CL . K 4 PO4 A 1 701 701 PO4 PO4 . L 5 PG4 A 1 301 301 PG4 PG4 . M 2 CA D 1 102 102 CA CA . N 3 CL D 1 202 202 CL CL . O 5 PG4 D 1 401 401 PG4 PG4 . P 2 CA F 1 103 103 CA CA . Q 3 CL F 1 203 203 CL CL . R 5 PG4 F 1 501 501 PG4 PG4 . S 2 CA G 1 104 104 CA CA . T 3 CL G 1 204 204 CL CL . U 5 PG4 G 1 601 601 PG4 PG4 . V 6 HOH A 1 702 32 HOH HOH . V 6 HOH A 2 703 33 HOH HOH . V 6 HOH A 3 704 39 HOH HOH . W 6 HOH B 1 98 27 HOH HOH . W 6 HOH B 2 99 28 HOH HOH . X 6 HOH C 1 98 3 HOH HOH . X 6 HOH C 2 99 7 HOH HOH . X 6 HOH C 3 100 8 HOH HOH . X 6 HOH C 4 101 11 HOH HOH . X 6 HOH C 5 102 12 HOH HOH . X 6 HOH C 6 103 14 HOH HOH . X 6 HOH C 7 104 29 HOH HOH . X 6 HOH C 8 105 30 HOH HOH . Y 6 HOH D 1 2 2 HOH HOH . Y 6 HOH D 2 4 4 HOH HOH . Y 6 HOH D 3 9 9 HOH HOH . Z 6 HOH E 1 98 23 HOH HOH . Z 6 HOH E 2 99 24 HOH HOH . Z 6 HOH E 3 100 31 HOH HOH . Z 6 HOH E 4 101 34 HOH HOH . Z 6 HOH E 5 102 41 HOH HOH . Z 6 HOH E 6 103 42 HOH HOH . AA 6 HOH G 1 602 37 HOH HOH . AA 6 HOH G 2 603 43 HOH HOH . BA 6 HOH H 1 98 35 HOH HOH . BA 6 HOH H 2 99 38 HOH HOH . BA 6 HOH H 3 100 44 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 PG4 . . . R 5 35.746 76.893 84.63 1 150.59 ? C2 PG4 501 F 1 HETATM 2 O O2 PG4 . . . R 5 35.74 75.664 83.883 1 151.17 ? O2 PG4 501 F 1 HETATM 3 C C3 PG4 . . . R 5 35.388 75.819 82.493 1 151.03 ? C3 PG4 501 F 1 HETATM 4 C C4 PG4 . . . R 5 35.665 74.541 81.682 1 150.63 ? C4 PG4 501 F 1 HETATM 5 O O3 PG4 . . . R 5 37.052 74.446 81.314 1 150.05 ? O3 PG4 501 F 1 HETATM 6 C C5 PG4 . . . R 5 37.775 73.367 81.933 1 149.99 ? C5 PG4 501 F 1 HETATM 7 C C6 PG4 . . . R 5 38.024 73.529 83.441 1 148.82 ? C6 PG4 501 F 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 7 #