data_1SFT
#
_model_server_result.job_id            CmHEH4sYVKMZ2fpzvVwjsA 
_model_server_result.datetime_utc      '2024-10-31 13:22:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1sft 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":402}' 
#
_entry.id    1SFT 
#
_exptl.entry_id    1SFT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              247.142 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "PYRIDOXAL-5'-PHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1SFT 
_cell.length_a            98.59 
_cell.length_b            90.13 
_cell.length_c            85.13 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1SFT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 39 A LYS 39 1_555 D C4A PLP . A PLP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.28 ? 
covale ? covale2 B NZ LYS 39 B LYS 39 1_555 F C4A PLP . B PLP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale3 B CE LYS 39 B LYS 39 1_555 F C4A PLP . B PLP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? 
#
_chem_comp.formula           'C8 H10 N O6 P' 
_chem_comp.formula_weight    247.142 
_chem_comp.id                PLP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "PYRIDOXAL-5'-PHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'VITAMIN B6 Phosphate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 PLP doub 266 n y 
N1 C6 PLP sing 267 n y 
C2 C2A PLP sing 268 n n 
C2 C3 PLP sing 269 n y 
C2A H2A1 PLP sing 270 n n 
C2A H2A2 PLP sing 271 n n 
C2A H2A3 PLP sing 272 n n 
C3 O3 PLP sing 273 n n 
C3 C4 PLP doub 274 n y 
O3 HO3 PLP sing 275 n n 
C4 C4A PLP sing 276 n n 
C4 C5 PLP sing 277 n y 
C4A O4A PLP doub 278 n n 
C4A H4A PLP sing 279 n n 
C5 C6 PLP doub 280 n y 
C5 C5A PLP sing 281 n n 
C6 H6 PLP sing 282 n n 
C5A O4P PLP sing 283 n n 
C5A H5A1 PLP sing 284 n n 
C5A H5A2 PLP sing 285 n n 
O4P P PLP sing 286 n n 
P O1P PLP doub 287 n n 
P O2P PLP sing 288 n n 
P O3P PLP sing 289 n n 
O2P HOP2 PLP sing 290 n n 
O3P HOP3 PLP sing 291 n n 
#
_atom_sites.entry_id                     1SFT 
_atom_sites.fract_transf_matrix[1][1]    0.010143 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011095 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011747 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ACT A 1 401 401 ACT ACT . 
D 3 PLP A 1 402 39 PLP PLP . 
E 2 ACT B 1 400 400 ACT ACT . 
F 3 PLP B 1 401 39 PLP PLP . 
G 4 HOH A 1 403 501 HOH HOH . 
G 4 HOH A 2 404 502 HOH HOH . 
G 4 HOH A 3 405 503 HOH HOH . 
G 4 HOH A 4 406 504 HOH HOH . 
G 4 HOH A 5 407 505 HOH HOH . 
G 4 HOH A 6 408 506 HOH HOH . 
G 4 HOH A 7 409 507 HOH HOH . 
G 4 HOH A 8 410 509 HOH HOH . 
G 4 HOH A 9 411 510 HOH HOH . 
G 4 HOH A 10 412 511 HOH HOH . 
G 4 HOH A 11 413 512 HOH HOH . 
G 4 HOH A 12 414 513 HOH HOH . 
G 4 HOH A 13 415 514 HOH HOH . 
G 4 HOH A 14 416 515 HOH HOH . 
G 4 HOH A 15 417 516 HOH HOH . 
G 4 HOH A 16 418 517 HOH HOH . 
G 4 HOH A 17 419 518 HOH HOH . 
G 4 HOH A 18 420 519 HOH HOH . 
G 4 HOH A 19 421 520 HOH HOH . 
G 4 HOH A 20 422 521 HOH HOH . 
G 4 HOH A 21 423 522 HOH HOH . 
G 4 HOH A 22 424 523 HOH HOH . 
G 4 HOH A 23 425 524 HOH HOH . 
G 4 HOH A 24 426 525 HOH HOH . 
G 4 HOH A 25 427 526 HOH HOH . 
G 4 HOH A 26 428 527 HOH HOH . 
G 4 HOH A 27 429 528 HOH HOH . 
G 4 HOH A 28 430 529 HOH HOH . 
G 4 HOH A 29 431 530 HOH HOH . 
G 4 HOH A 30 432 531 HOH HOH . 
G 4 HOH A 31 433 532 HOH HOH . 
G 4 HOH A 32 434 533 HOH HOH . 
G 4 HOH A 33 435 534 HOH HOH . 
G 4 HOH A 34 436 535 HOH HOH . 
G 4 HOH A 35 437 536 HOH HOH . 
G 4 HOH A 36 438 537 HOH HOH . 
G 4 HOH A 37 439 538 HOH HOH . 
G 4 HOH A 38 440 539 HOH HOH . 
G 4 HOH A 39 441 540 HOH HOH . 
G 4 HOH A 40 442 541 HOH HOH . 
G 4 HOH A 41 443 542 HOH HOH . 
G 4 HOH A 42 444 543 HOH HOH . 
G 4 HOH A 43 445 544 HOH HOH . 
G 4 HOH A 44 446 545 HOH HOH . 
G 4 HOH A 45 447 546 HOH HOH . 
G 4 HOH A 46 448 547 HOH HOH . 
G 4 HOH A 47 449 548 HOH HOH . 
G 4 HOH A 48 450 550 HOH HOH . 
G 4 HOH A 49 451 551 HOH HOH . 
G 4 HOH A 50 452 552 HOH HOH . 
G 4 HOH A 51 453 553 HOH HOH . 
G 4 HOH A 52 454 554 HOH HOH . 
G 4 HOH A 53 455 555 HOH HOH . 
G 4 HOH A 54 456 556 HOH HOH . 
G 4 HOH A 55 457 557 HOH HOH . 
G 4 HOH A 56 458 558 HOH HOH . 
G 4 HOH A 57 459 559 HOH HOH . 
G 4 HOH A 58 460 560 HOH HOH . 
G 4 HOH A 59 461 561 HOH HOH . 
G 4 HOH A 60 462 562 HOH HOH . 
G 4 HOH A 61 463 563 HOH HOH . 
G 4 HOH A 62 464 564 HOH HOH . 
G 4 HOH A 63 465 565 HOH HOH . 
G 4 HOH A 64 466 566 HOH HOH . 
G 4 HOH A 65 467 567 HOH HOH . 
G 4 HOH A 66 468 568 HOH HOH . 
G 4 HOH A 67 469 569 HOH HOH . 
G 4 HOH A 68 470 570 HOH HOH . 
G 4 HOH A 69 471 571 HOH HOH . 
G 4 HOH A 70 472 572 HOH HOH . 
G 4 HOH A 71 473 573 HOH HOH . 
G 4 HOH A 72 474 576 HOH HOH . 
G 4 HOH A 73 475 577 HOH HOH . 
G 4 HOH A 74 476 579 HOH HOH . 
G 4 HOH A 75 477 580 HOH HOH . 
G 4 HOH A 76 478 581 HOH HOH . 
G 4 HOH A 77 479 582 HOH HOH . 
G 4 HOH A 78 480 583 HOH HOH . 
G 4 HOH A 79 481 584 HOH HOH . 
G 4 HOH A 80 482 585 HOH HOH . 
G 4 HOH A 81 483 586 HOH HOH . 
G 4 HOH A 82 484 587 HOH HOH . 
G 4 HOH A 83 485 588 HOH HOH . 
G 4 HOH A 84 486 592 HOH HOH . 
G 4 HOH A 85 487 593 HOH HOH . 
G 4 HOH A 86 488 594 HOH HOH . 
G 4 HOH A 87 489 595 HOH HOH . 
G 4 HOH A 88 490 597 HOH HOH . 
G 4 HOH A 89 491 598 HOH HOH . 
G 4 HOH A 90 492 599 HOH HOH . 
G 4 HOH A 91 493 600 HOH HOH . 
G 4 HOH A 92 494 601 HOH HOH . 
G 4 HOH A 93 495 602 HOH HOH . 
G 4 HOH A 94 496 603 HOH HOH . 
G 4 HOH A 95 497 604 HOH HOH . 
G 4 HOH A 96 498 605 HOH HOH . 
G 4 HOH A 97 499 606 HOH HOH . 
G 4 HOH A 98 500 608 HOH HOH . 
G 4 HOH A 99 501 609 HOH HOH . 
G 4 HOH A 100 502 610 HOH HOH . 
G 4 HOH A 101 503 611 HOH HOH . 
G 4 HOH A 102 504 612 HOH HOH . 
G 4 HOH A 103 505 613 HOH HOH . 
G 4 HOH A 104 506 614 HOH HOH . 
G 4 HOH A 105 507 701 HOH HOH . 
G 4 HOH A 106 508 703 HOH HOH . 
G 4 HOH A 107 509 704 HOH HOH . 
G 4 HOH A 108 510 707 HOH HOH . 
G 4 HOH A 109 511 709 HOH HOH . 
G 4 HOH A 110 512 710 HOH HOH . 
G 4 HOH A 111 513 711 HOH HOH . 
G 4 HOH A 112 514 749 HOH HOH . 
G 4 HOH A 113 515 794 HOH HOH . 
G 4 HOH A 114 516 795 HOH HOH . 
G 4 HOH A 115 517 796 HOH HOH . 
H 4 HOH B 1 402 500 HOH HOH . 
H 4 HOH B 2 403 508 HOH HOH . 
H 4 HOH B 3 404 549 HOH HOH . 
H 4 HOH B 4 405 574 HOH HOH . 
H 4 HOH B 5 406 575 HOH HOH . 
H 4 HOH B 6 407 578 HOH HOH . 
H 4 HOH B 7 408 589 HOH HOH . 
H 4 HOH B 8 409 596 HOH HOH . 
H 4 HOH B 9 410 700 HOH HOH . 
H 4 HOH B 10 411 702 HOH HOH . 
H 4 HOH B 11 412 705 HOH HOH . 
H 4 HOH B 12 413 706 HOH HOH . 
H 4 HOH B 13 414 708 HOH HOH . 
H 4 HOH B 14 415 712 HOH HOH . 
H 4 HOH B 15 416 713 HOH HOH . 
H 4 HOH B 16 417 714 HOH HOH . 
H 4 HOH B 17 418 715 HOH HOH . 
H 4 HOH B 18 419 716 HOH HOH . 
H 4 HOH B 19 420 717 HOH HOH . 
H 4 HOH B 20 421 718 HOH HOH . 
H 4 HOH B 21 422 719 HOH HOH . 
H 4 HOH B 22 423 720 HOH HOH . 
H 4 HOH B 23 424 721 HOH HOH . 
H 4 HOH B 24 425 722 HOH HOH . 
H 4 HOH B 25 426 723 HOH HOH . 
H 4 HOH B 26 427 724 HOH HOH . 
H 4 HOH B 27 428 725 HOH HOH . 
H 4 HOH B 28 429 727 HOH HOH . 
H 4 HOH B 29 430 728 HOH HOH . 
H 4 HOH B 30 431 729 HOH HOH . 
H 4 HOH B 31 432 730 HOH HOH . 
H 4 HOH B 32 433 731 HOH HOH . 
H 4 HOH B 33 434 732 HOH HOH . 
H 4 HOH B 34 435 733 HOH HOH . 
H 4 HOH B 35 436 734 HOH HOH . 
H 4 HOH B 36 437 735 HOH HOH . 
H 4 HOH B 37 438 736 HOH HOH . 
H 4 HOH B 38 439 737 HOH HOH . 
H 4 HOH B 39 440 738 HOH HOH . 
H 4 HOH B 40 441 739 HOH HOH . 
H 4 HOH B 41 442 740 HOH HOH . 
H 4 HOH B 42 443 741 HOH HOH . 
H 4 HOH B 43 444 742 HOH HOH . 
H 4 HOH B 44 445 743 HOH HOH . 
H 4 HOH B 45 446 744 HOH HOH . 
H 4 HOH B 46 447 745 HOH HOH . 
H 4 HOH B 47 448 746 HOH HOH . 
H 4 HOH B 48 449 747 HOH HOH . 
H 4 HOH B 49 450 748 HOH HOH . 
H 4 HOH B 50 451 750 HOH HOH . 
H 4 HOH B 51 452 751 HOH HOH . 
H 4 HOH B 52 453 752 HOH HOH . 
H 4 HOH B 53 454 753 HOH HOH . 
H 4 HOH B 54 455 754 HOH HOH . 
H 4 HOH B 55 456 755 HOH HOH . 
H 4 HOH B 56 457 756 HOH HOH . 
H 4 HOH B 57 458 757 HOH HOH . 
H 4 HOH B 58 459 758 HOH HOH . 
H 4 HOH B 59 460 759 HOH HOH . 
H 4 HOH B 60 461 760 HOH HOH . 
H 4 HOH B 61 462 761 HOH HOH . 
H 4 HOH B 62 463 762 HOH HOH . 
H 4 HOH B 63 464 763 HOH HOH . 
H 4 HOH B 64 465 764 HOH HOH . 
H 4 HOH B 65 466 765 HOH HOH . 
H 4 HOH B 66 467 766 HOH HOH . 
H 4 HOH B 67 468 767 HOH HOH . 
H 4 HOH B 68 469 768 HOH HOH . 
H 4 HOH B 69 470 769 HOH HOH . 
H 4 HOH B 70 471 770 HOH HOH . 
H 4 HOH B 71 472 771 HOH HOH . 
H 4 HOH B 72 473 772 HOH HOH . 
H 4 HOH B 73 474 773 HOH HOH . 
H 4 HOH B 74 475 774 HOH HOH . 
H 4 HOH B 75 476 775 HOH HOH . 
H 4 HOH B 76 477 776 HOH HOH . 
H 4 HOH B 77 478 777 HOH HOH . 
H 4 HOH B 78 479 778 HOH HOH . 
H 4 HOH B 79 480 779 HOH HOH . 
H 4 HOH B 80 481 780 HOH HOH . 
H 4 HOH B 81 482 781 HOH HOH . 
H 4 HOH B 82 483 782 HOH HOH . 
H 4 HOH B 83 484 783 HOH HOH . 
H 4 HOH B 84 485 785 HOH HOH . 
H 4 HOH B 85 486 786 HOH HOH . 
H 4 HOH B 86 487 787 HOH HOH . 
H 4 HOH B 87 488 788 HOH HOH . 
H 4 HOH B 88 489 789 HOH HOH . 
H 4 HOH B 89 490 790 HOH HOH . 
H 4 HOH B 90 491 791 HOH HOH . 
H 4 HOH B 91 492 792 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PLP . . . D 3 23.649 10.501 68.727 1 16.66 ? N1 PLP 402 A 1 
HETATM 2 C C2 PLP . . . D 3 24.737 11.217 69.2 1 17.39 ? C2 PLP 402 A 1 
HETATM 3 C C2A PLP . . . D 3 26.105 10.6 69.319 1 13.68 ? C2A PLP 402 A 1 
HETATM 4 C C3 PLP . . . D 3 24.571 12.537 69.437 1 19.47 ? C3 PLP 402 A 1 
HETATM 5 O O3 PLP . . . D 3 25.646 13.324 69.552 1 24.72 ? O3 PLP 402 A 1 
HETATM 6 C C4 PLP . . . D 3 23.308 13.111 69.236 1 19.49 ? C4 PLP 402 A 1 
HETATM 7 C C4A PLP . . . D 3 23.073 14.649 69.547 1 22.61 ? C4A PLP 402 A 1 
HETATM 8 C C5 PLP . . . D 3 22.28 12.332 68.695 1 17.91 ? C5 PLP 402 A 1 
HETATM 9 C C6 PLP . . . D 3 22.466 11.051 68.472 1 13.07 ? C6 PLP 402 A 1 
HETATM 10 C C5A PLP . . . D 3 20.966 12.96 68.246 1 18.24 ? C5A PLP 402 A 1 
HETATM 11 O O4P PLP . . . D 3 21.144 13.697 67.028 1 19.65 ? O4P PLP 402 A 1 
HETATM 12 P P PLP . . . D 3 19.99 14.521 66.301 1 17.77 ? P PLP 402 A 1 
HETATM 13 O O1P PLP . . . D 3 19.645 15.689 67.115 1 18.13 ? O1P PLP 402 A 1 
HETATM 14 O O2P PLP . . . D 3 20.689 14.881 65.067 1 25.92 ? O2P PLP 402 A 1 
HETATM 15 O O3P PLP . . . D 3 18.931 13.528 66.173 1 18.31 ? O3P PLP 402 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           259 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           15 
#