data_1SG9 # _model_server_result.job_id fibSEdsYuN0IUQOzn35SqA _model_server_result.datetime_utc '2024-12-02 06:12:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1sg9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 1SG9 # _exptl.entry_id 1SG9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1SG9 _cell.length_a 81.025 _cell.length_b 188.332 _cell.length_c 207.684 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SG9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H,I,J,L 1 1 B,F,G,K 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 188.332 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 F N N ? 2 H N N # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 277 n n N HN1 SAM sing 278 n n N HN2 SAM sing 279 n n CA C SAM sing 280 n n CA CB SAM sing 281 n n CA HA SAM sing 282 n n C O SAM doub 283 n n C OXT SAM sing 284 n n CB CG SAM sing 285 n n CB HB1 SAM sing 286 n n CB HB2 SAM sing 287 n n CG SD SAM sing 288 n n CG HG1 SAM sing 289 n n CG HG2 SAM sing 290 n n SD CE SAM sing 291 n n SD C5' SAM sing 292 n n CE HE1 SAM sing 293 n n CE HE2 SAM sing 294 n n CE HE3 SAM sing 295 n n C5' C4' SAM sing 296 n n C5' "H5'1" SAM sing 297 n n C5' "H5'2" SAM sing 298 n n C4' O4' SAM sing 299 n n C4' C3' SAM sing 300 n n C4' H4' SAM sing 301 n n O4' C1' SAM sing 302 n n C3' O3' SAM sing 303 n n C3' C2' SAM sing 304 n n C3' H3' SAM sing 305 n n O3' HO3' SAM sing 306 n n C2' O2' SAM sing 307 n n C2' C1' SAM sing 308 n n C2' H2' SAM sing 309 n n O2' HO2' SAM sing 310 n n C1' N9 SAM sing 311 n n C1' H1' SAM sing 312 n n N9 C8 SAM sing 313 n y N9 C4 SAM sing 314 n y C8 N7 SAM doub 315 n y C8 H8 SAM sing 316 n n N7 C5 SAM sing 317 n y C5 C6 SAM sing 318 n y C5 C4 SAM doub 319 n y C6 N6 SAM sing 320 n n C6 N1 SAM doub 321 n y N6 HN61 SAM sing 322 n n N6 HN62 SAM sing 323 n n N1 C2 SAM sing 324 n y C2 N3 SAM doub 325 n y C2 H2 SAM sing 326 n n N3 C4 SAM sing 327 n y # _atom_sites.entry_id 1SG9 _atom_sites.fract_transf_matrix[1][1] 0.012342 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00531 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004815 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 SAM A 1 301 301 SAM SAM . E 3 GLN A 1 400 400 GLN GLN . F 2 SAM B 1 302 302 SAM SAM . G 3 GLN B 1 401 401 GLN GLN . H 2 SAM C 1 303 303 SAM SAM . I 3 GLN C 1 402 402 GLN GLN . J 4 HOH A 1 401 302 HOH HOH . J 4 HOH A 2 402 303 HOH HOH . J 4 HOH A 3 403 304 HOH HOH . J 4 HOH A 4 404 305 HOH HOH . J 4 HOH A 5 405 306 HOH HOH . J 4 HOH A 6 406 307 HOH HOH . J 4 HOH A 7 407 308 HOH HOH . J 4 HOH A 8 408 309 HOH HOH . J 4 HOH A 9 409 310 HOH HOH . J 4 HOH A 10 410 311 HOH HOH . J 4 HOH A 11 411 312 HOH HOH . J 4 HOH A 12 412 313 HOH HOH . J 4 HOH A 13 413 314 HOH HOH . J 4 HOH A 14 414 315 HOH HOH . J 4 HOH A 15 415 316 HOH HOH . J 4 HOH A 16 416 317 HOH HOH . J 4 HOH A 17 417 318 HOH HOH . J 4 HOH A 18 418 319 HOH HOH . J 4 HOH A 19 419 320 HOH HOH . J 4 HOH A 20 420 321 HOH HOH . J 4 HOH A 21 421 322 HOH HOH . J 4 HOH A 22 422 323 HOH HOH . J 4 HOH A 23 423 324 HOH HOH . J 4 HOH A 24 424 325 HOH HOH . J 4 HOH A 25 425 326 HOH HOH . J 4 HOH A 26 426 327 HOH HOH . J 4 HOH A 27 427 328 HOH HOH . J 4 HOH A 28 428 329 HOH HOH . J 4 HOH A 29 429 330 HOH HOH . J 4 HOH A 30 430 331 HOH HOH . J 4 HOH A 31 431 332 HOH HOH . J 4 HOH A 32 432 333 HOH HOH . J 4 HOH A 33 433 334 HOH HOH . J 4 HOH A 34 434 335 HOH HOH . J 4 HOH A 35 435 336 HOH HOH . J 4 HOH A 36 436 337 HOH HOH . J 4 HOH A 37 437 338 HOH HOH . J 4 HOH A 38 438 339 HOH HOH . J 4 HOH A 39 439 340 HOH HOH . J 4 HOH A 40 440 341 HOH HOH . J 4 HOH A 41 441 342 HOH HOH . J 4 HOH A 42 442 343 HOH HOH . J 4 HOH A 43 443 344 HOH HOH . J 4 HOH A 44 444 345 HOH HOH . J 4 HOH A 45 445 346 HOH HOH . J 4 HOH A 46 446 347 HOH HOH . J 4 HOH A 47 447 348 HOH HOH . J 4 HOH A 48 448 349 HOH HOH . J 4 HOH A 49 449 350 HOH HOH . J 4 HOH A 50 450 351 HOH HOH . J 4 HOH A 51 451 352 HOH HOH . J 4 HOH A 52 452 353 HOH HOH . J 4 HOH A 53 453 354 HOH HOH . J 4 HOH A 54 454 355 HOH HOH . J 4 HOH A 55 455 356 HOH HOH . J 4 HOH A 56 456 357 HOH HOH . J 4 HOH A 57 457 358 HOH HOH . J 4 HOH A 58 458 359 HOH HOH . J 4 HOH A 59 459 360 HOH HOH . J 4 HOH A 60 460 361 HOH HOH . J 4 HOH A 61 461 362 HOH HOH . J 4 HOH A 62 462 363 HOH HOH . J 4 HOH A 63 463 364 HOH HOH . J 4 HOH A 64 464 365 HOH HOH . J 4 HOH A 65 465 366 HOH HOH . J 4 HOH A 66 466 367 HOH HOH . J 4 HOH A 67 467 368 HOH HOH . J 4 HOH A 68 468 369 HOH HOH . J 4 HOH A 69 469 370 HOH HOH . J 4 HOH A 70 470 371 HOH HOH . J 4 HOH A 71 471 372 HOH HOH . J 4 HOH A 72 472 373 HOH HOH . J 4 HOH A 73 473 374 HOH HOH . J 4 HOH A 74 474 375 HOH HOH . J 4 HOH A 75 475 376 HOH HOH . J 4 HOH A 76 476 377 HOH HOH . J 4 HOH A 77 477 378 HOH HOH . J 4 HOH A 78 478 379 HOH HOH . J 4 HOH A 79 479 380 HOH HOH . J 4 HOH A 80 480 381 HOH HOH . J 4 HOH A 81 481 382 HOH HOH . J 4 HOH A 82 482 383 HOH HOH . J 4 HOH A 83 483 384 HOH HOH . J 4 HOH A 84 484 385 HOH HOH . J 4 HOH A 85 485 386 HOH HOH . J 4 HOH A 86 486 387 HOH HOH . J 4 HOH A 87 487 388 HOH HOH . J 4 HOH A 88 488 389 HOH HOH . J 4 HOH A 89 489 390 HOH HOH . J 4 HOH A 90 490 391 HOH HOH . J 4 HOH A 91 491 392 HOH HOH . J 4 HOH A 92 492 393 HOH HOH . J 4 HOH A 93 493 394 HOH HOH . J 4 HOH A 94 494 395 HOH HOH . J 4 HOH A 95 495 396 HOH HOH . J 4 HOH A 96 496 456 HOH HOH . K 4 HOH B 1 402 303 HOH HOH . K 4 HOH B 2 403 304 HOH HOH . K 4 HOH B 3 404 305 HOH HOH . K 4 HOH B 4 405 306 HOH HOH . K 4 HOH B 5 406 307 HOH HOH . K 4 HOH B 6 407 308 HOH HOH . K 4 HOH B 7 408 309 HOH HOH . K 4 HOH B 8 409 310 HOH HOH . K 4 HOH B 9 410 311 HOH HOH . K 4 HOH B 10 411 312 HOH HOH . K 4 HOH B 11 412 313 HOH HOH . K 4 HOH B 12 413 314 HOH HOH . K 4 HOH B 13 414 315 HOH HOH . K 4 HOH B 14 415 316 HOH HOH . K 4 HOH B 15 416 317 HOH HOH . K 4 HOH B 16 417 318 HOH HOH . K 4 HOH B 17 418 319 HOH HOH . K 4 HOH B 18 419 320 HOH HOH . K 4 HOH B 19 420 321 HOH HOH . K 4 HOH B 20 421 322 HOH HOH . K 4 HOH B 21 422 323 HOH HOH . K 4 HOH B 22 423 324 HOH HOH . K 4 HOH B 23 424 325 HOH HOH . K 4 HOH B 24 425 326 HOH HOH . K 4 HOH B 25 426 327 HOH HOH . K 4 HOH B 26 427 328 HOH HOH . K 4 HOH B 27 428 329 HOH HOH . K 4 HOH B 28 429 330 HOH HOH . K 4 HOH B 29 430 331 HOH HOH . K 4 HOH B 30 431 332 HOH HOH . K 4 HOH B 31 432 333 HOH HOH . K 4 HOH B 32 433 334 HOH HOH . K 4 HOH B 33 434 335 HOH HOH . K 4 HOH B 34 435 336 HOH HOH . K 4 HOH B 35 436 337 HOH HOH . K 4 HOH B 36 437 338 HOH HOH . K 4 HOH B 37 438 339 HOH HOH . K 4 HOH B 38 439 340 HOH HOH . K 4 HOH B 39 440 341 HOH HOH . K 4 HOH B 40 441 342 HOH HOH . K 4 HOH B 41 442 343 HOH HOH . K 4 HOH B 42 443 344 HOH HOH . K 4 HOH B 43 444 345 HOH HOH . K 4 HOH B 44 445 346 HOH HOH . K 4 HOH B 45 446 347 HOH HOH . K 4 HOH B 46 447 348 HOH HOH . K 4 HOH B 47 448 349 HOH HOH . K 4 HOH B 48 449 350 HOH HOH . K 4 HOH B 49 450 351 HOH HOH . K 4 HOH B 50 451 352 HOH HOH . K 4 HOH B 51 452 353 HOH HOH . K 4 HOH B 52 453 354 HOH HOH . K 4 HOH B 53 454 355 HOH HOH . K 4 HOH B 54 455 356 HOH HOH . K 4 HOH B 55 456 357 HOH HOH . K 4 HOH B 56 457 358 HOH HOH . K 4 HOH B 57 458 359 HOH HOH . K 4 HOH B 58 459 360 HOH HOH . K 4 HOH B 59 460 361 HOH HOH . K 4 HOH B 60 461 362 HOH HOH . K 4 HOH B 61 462 363 HOH HOH . K 4 HOH B 62 463 364 HOH HOH . K 4 HOH B 63 464 365 HOH HOH . K 4 HOH B 64 465 366 HOH HOH . K 4 HOH B 65 466 367 HOH HOH . K 4 HOH B 66 467 368 HOH HOH . K 4 HOH B 67 468 369 HOH HOH . K 4 HOH B 68 469 370 HOH HOH . K 4 HOH B 69 470 371 HOH HOH . K 4 HOH B 70 471 372 HOH HOH . K 4 HOH B 71 472 373 HOH HOH . K 4 HOH B 72 473 374 HOH HOH . K 4 HOH B 73 474 375 HOH HOH . K 4 HOH B 74 475 376 HOH HOH . K 4 HOH B 75 476 410 HOH HOH . K 4 HOH B 76 477 457 HOH HOH . K 4 HOH B 77 478 467 HOH HOH . L 4 HOH C 1 403 403 HOH HOH . L 4 HOH C 2 404 404 HOH HOH . L 4 HOH C 3 405 405 HOH HOH . L 4 HOH C 4 406 406 HOH HOH . L 4 HOH C 5 407 407 HOH HOH . L 4 HOH C 6 408 408 HOH HOH . L 4 HOH C 7 409 409 HOH HOH . L 4 HOH C 8 410 411 HOH HOH . L 4 HOH C 9 411 412 HOH HOH . L 4 HOH C 10 412 413 HOH HOH . L 4 HOH C 11 413 414 HOH HOH . L 4 HOH C 12 414 415 HOH HOH . L 4 HOH C 13 415 416 HOH HOH . L 4 HOH C 14 416 417 HOH HOH . L 4 HOH C 15 417 418 HOH HOH . L 4 HOH C 16 418 419 HOH HOH . L 4 HOH C 17 419 420 HOH HOH . L 4 HOH C 18 420 421 HOH HOH . L 4 HOH C 19 421 422 HOH HOH . L 4 HOH C 20 422 423 HOH HOH . L 4 HOH C 21 423 424 HOH HOH . L 4 HOH C 22 424 425 HOH HOH . L 4 HOH C 23 425 426 HOH HOH . L 4 HOH C 24 426 427 HOH HOH . L 4 HOH C 25 427 428 HOH HOH . L 4 HOH C 26 428 429 HOH HOH . L 4 HOH C 27 429 430 HOH HOH . L 4 HOH C 28 430 431 HOH HOH . L 4 HOH C 29 431 432 HOH HOH . L 4 HOH C 30 432 433 HOH HOH . L 4 HOH C 31 433 434 HOH HOH . L 4 HOH C 32 434 435 HOH HOH . L 4 HOH C 33 435 436 HOH HOH . L 4 HOH C 34 436 437 HOH HOH . L 4 HOH C 35 437 438 HOH HOH . L 4 HOH C 36 438 439 HOH HOH . L 4 HOH C 37 439 440 HOH HOH . L 4 HOH C 38 440 441 HOH HOH . L 4 HOH C 39 441 442 HOH HOH . L 4 HOH C 40 442 443 HOH HOH . L 4 HOH C 41 443 444 HOH HOH . L 4 HOH C 42 444 445 HOH HOH . L 4 HOH C 43 445 446 HOH HOH . L 4 HOH C 44 446 447 HOH HOH . L 4 HOH C 45 447 448 HOH HOH . L 4 HOH C 46 448 449 HOH HOH . L 4 HOH C 47 449 450 HOH HOH . L 4 HOH C 48 450 451 HOH HOH . L 4 HOH C 49 451 452 HOH HOH . L 4 HOH C 50 452 453 HOH HOH . L 4 HOH C 51 453 454 HOH HOH . L 4 HOH C 52 454 455 HOH HOH . L 4 HOH C 53 455 458 HOH HOH . L 4 HOH C 54 456 459 HOH HOH . L 4 HOH C 55 457 460 HOH HOH . L 4 HOH C 56 458 461 HOH HOH . L 4 HOH C 57 459 462 HOH HOH . L 4 HOH C 58 460 463 HOH HOH . L 4 HOH C 59 461 464 HOH HOH . L 4 HOH C 60 462 465 HOH HOH . L 4 HOH C 61 463 466 HOH HOH . L 4 HOH C 62 464 468 HOH HOH . L 4 HOH C 63 465 469 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . D 2 23.95 49.395 67.991 1 31.24 ? N SAM 301 A 1 HETATM 2 C CA SAM . . . D 2 25.142 48.51 68.172 1 31.48 ? CA SAM 301 A 1 HETATM 3 C C SAM . . . D 2 24.879 47.194 67.532 1 31.1 ? C SAM 301 A 1 HETATM 4 O O SAM . . . D 2 23.774 46.998 67.003 1 32.42 ? O SAM 301 A 1 HETATM 5 O OXT SAM . . . D 2 25.854 46.373 67.617 1 30.34 ? OXT SAM 301 A 1 HETATM 6 C CB SAM . . . D 2 25.365 48.192 69.628 1 31.99 ? CB SAM 301 A 1 HETATM 7 C CG SAM . . . D 2 24.603 49.071 70.492 1 31.58 ? CG SAM 301 A 1 HETATM 8 S SD SAM . . . D 2 24.679 48.804 72.268 1 30.27 ? SD SAM 301 A 1 HETATM 9 C CE SAM . . . D 2 23.697 47.329 72.555 1 34.39 ? CE SAM 301 A 1 HETATM 10 C C5' SAM . . . D 2 23.686 50.135 72.809 1 27.98 ? C5' SAM 301 A 1 HETATM 11 C C4' SAM . . . D 2 24.347 51.499 72.636 1 23.78 ? C4' SAM 301 A 1 HETATM 12 O O4' SAM . . . D 2 23.407 52.458 73.071 1 25.47 ? O4' SAM 301 A 1 HETATM 13 C C3' SAM . . . D 2 25.539 51.712 73.564 1 23.61 ? C3' SAM 301 A 1 HETATM 14 O O3' SAM . . . D 2 26.619 51.896 72.599 1 25.3 ? O3' SAM 301 A 1 HETATM 15 C C2' SAM . . . D 2 25.336 53.039 74.277 1 24.84 ? C2' SAM 301 A 1 HETATM 16 O O2' SAM . . . D 2 26.408 53.934 74.421 1 26.52 ? O2' SAM 301 A 1 HETATM 17 C C1' SAM . . . D 2 24.069 53.582 73.58 1 24.47 ? C1' SAM 301 A 1 HETATM 18 N N9 SAM . . . D 2 23.059 54.232 74.375 1 27.41 ? N9 SAM 301 A 1 HETATM 19 C C8 SAM . . . D 2 22.554 53.922 75.611 1 29.09 ? C8 SAM 301 A 1 HETATM 20 N N7 SAM . . . D 2 21.596 54.729 76.002 1 31.06 ? N7 SAM 301 A 1 HETATM 21 C C5 SAM . . . D 2 21.469 55.628 74.944 1 30.13 ? C5 SAM 301 A 1 HETATM 22 C C6 SAM . . . D 2 20.607 56.748 74.708 1 31.85 ? C6 SAM 301 A 1 HETATM 23 N N6 SAM . . . D 2 19.662 57.139 75.603 1 33.37 ? N6 SAM 301 A 1 HETATM 24 N N1 SAM . . . D 2 20.734 57.457 73.524 1 30.03 ? N1 SAM 301 A 1 HETATM 25 C C2 SAM . . . D 2 21.669 57.061 72.637 1 28.32 ? C2 SAM 301 A 1 HETATM 26 N N3 SAM . . . D 2 22.523 56.022 72.751 1 28.73 ? N3 SAM 301 A 1 HETATM 27 C C4 SAM . . . D 2 22.37 55.339 73.942 1 28.48 ? C4 SAM 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 373 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #