data_1SGD # _model_server_result.job_id ZQbv31-UyovTeVR7CkAucw _model_server_result.datetime_utc '2025-03-04 08:18:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1sgd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":500}' # _entry.id 1SGD # _exptl.entry_id 1SGD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 119.13 _cell.angle_gamma 90 _cell.entry_id 1SGD _cell.length_a 45.55 _cell.length_b 54.66 _cell.length_c 45.63 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SGD _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 14 E CYS 42 1_555 A SG CYS 34 E CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf2 A SG CYS 135 E CYS 191 1_555 A SG CYS 162 E CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? disulf ? disulf3 B SG CYS 3 I CYS 8 1_555 B SG CYS 33 I CYS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? disulf ? disulf4 B SG CYS 11 I CYS 16 1_555 B SG CYS 30 I CYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? disulf ? disulf5 B SG CYS 19 I CYS 24 1_555 B SG CYS 51 I CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 260 n n P O2 PO4 sing 261 n n P O3 PO4 sing 262 n n P O4 PO4 sing 263 n n # _atom_sites.entry_id 1SGD _atom_sites.fract_transf_matrix[1][1] 0.021954 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.012234 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018295 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025089 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PO4 E 1 500 500 PO4 PO4 . D 4 HOH E 1 501 1 HOH HOH . D 4 HOH E 2 502 2 HOH HOH . D 4 HOH E 3 503 3 HOH HOH . D 4 HOH E 4 504 4 HOH HOH . D 4 HOH E 5 505 5 HOH HOH . D 4 HOH E 6 506 7 HOH HOH . D 4 HOH E 7 507 8 HOH HOH . D 4 HOH E 8 508 9 HOH HOH . D 4 HOH E 9 509 11 HOH HOH . D 4 HOH E 10 510 12 HOH HOH . D 4 HOH E 11 511 13 HOH HOH . D 4 HOH E 12 512 14 HOH HOH . D 4 HOH E 13 513 16 HOH HOH . D 4 HOH E 14 514 18 HOH HOH . D 4 HOH E 15 515 20 HOH HOH . D 4 HOH E 16 516 21 HOH HOH . D 4 HOH E 17 517 22 HOH HOH . D 4 HOH E 18 518 23 HOH HOH . D 4 HOH E 19 519 24 HOH HOH . D 4 HOH E 20 520 25 HOH HOH . D 4 HOH E 21 521 28 HOH HOH . D 4 HOH E 22 522 29 HOH HOH . D 4 HOH E 23 523 31 HOH HOH . D 4 HOH E 24 524 34 HOH HOH . D 4 HOH E 25 525 36 HOH HOH . D 4 HOH E 26 526 38 HOH HOH . D 4 HOH E 27 527 39 HOH HOH . D 4 HOH E 28 528 41 HOH HOH . D 4 HOH E 29 529 42 HOH HOH . D 4 HOH E 30 530 43 HOH HOH . D 4 HOH E 31 531 44 HOH HOH . D 4 HOH E 32 532 46 HOH HOH . D 4 HOH E 33 533 47 HOH HOH . D 4 HOH E 34 534 49 HOH HOH . D 4 HOH E 35 535 50 HOH HOH . D 4 HOH E 36 536 51 HOH HOH . D 4 HOH E 37 537 52 HOH HOH . D 4 HOH E 38 538 53 HOH HOH . D 4 HOH E 39 539 55 HOH HOH . D 4 HOH E 40 540 57 HOH HOH . D 4 HOH E 41 541 58 HOH HOH . D 4 HOH E 42 542 60 HOH HOH . D 4 HOH E 43 543 61 HOH HOH . D 4 HOH E 44 544 63 HOH HOH . D 4 HOH E 45 545 64 HOH HOH . D 4 HOH E 46 546 65 HOH HOH . D 4 HOH E 47 547 66 HOH HOH . D 4 HOH E 48 548 68 HOH HOH . D 4 HOH E 49 549 69 HOH HOH . D 4 HOH E 50 550 70 HOH HOH . D 4 HOH E 51 551 73 HOH HOH . D 4 HOH E 52 552 74 HOH HOH . D 4 HOH E 53 553 75 HOH HOH . D 4 HOH E 54 554 77 HOH HOH . D 4 HOH E 55 555 78 HOH HOH . D 4 HOH E 56 556 79 HOH HOH . D 4 HOH E 57 557 80 HOH HOH . D 4 HOH E 58 558 81 HOH HOH . D 4 HOH E 59 559 82 HOH HOH . D 4 HOH E 60 560 83 HOH HOH . D 4 HOH E 61 561 84 HOH HOH . D 4 HOH E 62 562 85 HOH HOH . D 4 HOH E 63 563 86 HOH HOH . D 4 HOH E 64 564 90 HOH HOH . D 4 HOH E 65 565 92 HOH HOH . D 4 HOH E 66 566 93 HOH HOH . D 4 HOH E 67 567 94 HOH HOH . D 4 HOH E 68 568 95 HOH HOH . D 4 HOH E 69 569 96 HOH HOH . D 4 HOH E 70 570 99 HOH HOH . D 4 HOH E 71 571 102 HOH HOH . D 4 HOH E 72 572 103 HOH HOH . D 4 HOH E 73 573 105 HOH HOH . D 4 HOH E 74 574 106 HOH HOH . D 4 HOH E 75 575 108 HOH HOH . D 4 HOH E 76 576 111 HOH HOH . D 4 HOH E 77 577 113 HOH HOH . D 4 HOH E 78 578 115 HOH HOH . D 4 HOH E 79 579 116 HOH HOH . D 4 HOH E 80 580 121 HOH HOH . D 4 HOH E 81 581 122 HOH HOH . D 4 HOH E 82 582 123 HOH HOH . D 4 HOH E 83 583 128 HOH HOH . D 4 HOH E 84 584 129 HOH HOH . D 4 HOH E 85 585 132 HOH HOH . D 4 HOH E 86 586 133 HOH HOH . D 4 HOH E 87 587 135 HOH HOH . D 4 HOH E 88 588 136 HOH HOH . D 4 HOH E 89 589 137 HOH HOH . D 4 HOH E 90 590 139 HOH HOH . D 4 HOH E 91 591 140 HOH HOH . D 4 HOH E 92 592 144 HOH HOH . D 4 HOH E 93 593 145 HOH HOH . D 4 HOH E 94 594 146 HOH HOH . D 4 HOH E 95 595 147 HOH HOH . D 4 HOH E 96 596 149 HOH HOH . D 4 HOH E 97 597 150 HOH HOH . D 4 HOH E 98 598 154 HOH HOH . D 4 HOH E 99 599 158 HOH HOH . D 4 HOH E 100 600 165 HOH HOH . D 4 HOH E 101 601 167 HOH HOH . D 4 HOH E 102 602 168 HOH HOH . D 4 HOH E 103 603 171 HOH HOH . D 4 HOH E 104 604 203 HOH HOH . D 4 HOH E 105 605 204 HOH HOH . D 4 HOH E 106 606 206 HOH HOH . D 4 HOH E 107 607 208 HOH HOH . D 4 HOH E 108 608 213 HOH HOH . D 4 HOH E 109 609 215 HOH HOH . D 4 HOH E 110 610 218 HOH HOH . D 4 HOH E 111 611 221 HOH HOH . D 4 HOH E 112 612 225 HOH HOH . D 4 HOH E 113 613 231 HOH HOH . D 4 HOH E 114 614 237 HOH HOH . D 4 HOH E 115 615 238 HOH HOH . D 4 HOH E 116 616 239 HOH HOH . D 4 HOH E 117 617 240 HOH HOH . D 4 HOH E 118 618 241 HOH HOH . D 4 HOH E 119 619 242 HOH HOH . D 4 HOH E 120 620 243 HOH HOH . D 4 HOH E 121 621 245 HOH HOH . D 4 HOH E 122 622 247 HOH HOH . D 4 HOH E 123 623 248 HOH HOH . D 4 HOH E 124 624 249 HOH HOH . D 4 HOH E 125 625 251 HOH HOH . D 4 HOH E 126 626 253 HOH HOH . D 4 HOH E 127 627 255 HOH HOH . D 4 HOH E 128 628 260 HOH HOH . E 4 HOH I 1 57 6 HOH HOH . E 4 HOH I 2 58 17 HOH HOH . E 4 HOH I 3 59 19 HOH HOH . E 4 HOH I 4 60 26 HOH HOH . E 4 HOH I 5 61 27 HOH HOH . E 4 HOH I 6 62 30 HOH HOH . E 4 HOH I 7 63 33 HOH HOH . E 4 HOH I 8 64 35 HOH HOH . E 4 HOH I 9 65 37 HOH HOH . E 4 HOH I 10 66 40 HOH HOH . E 4 HOH I 11 67 45 HOH HOH . E 4 HOH I 12 68 48 HOH HOH . E 4 HOH I 13 69 54 HOH HOH . E 4 HOH I 14 70 59 HOH HOH . E 4 HOH I 15 71 67 HOH HOH . E 4 HOH I 16 72 87 HOH HOH . E 4 HOH I 17 73 88 HOH HOH . E 4 HOH I 18 74 89 HOH HOH . E 4 HOH I 19 75 91 HOH HOH . E 4 HOH I 20 76 101 HOH HOH . E 4 HOH I 21 77 109 HOH HOH . E 4 HOH I 22 78 110 HOH HOH . E 4 HOH I 23 79 112 HOH HOH . E 4 HOH I 24 80 114 HOH HOH . E 4 HOH I 25 81 117 HOH HOH . E 4 HOH I 26 82 120 HOH HOH . E 4 HOH I 27 83 125 HOH HOH . E 4 HOH I 28 84 127 HOH HOH . E 4 HOH I 29 85 131 HOH HOH . E 4 HOH I 30 86 134 HOH HOH . E 4 HOH I 31 87 148 HOH HOH . E 4 HOH I 32 88 155 HOH HOH . E 4 HOH I 33 89 177 HOH HOH . E 4 HOH I 34 90 201 HOH HOH . E 4 HOH I 35 91 202 HOH HOH . E 4 HOH I 36 92 212 HOH HOH . E 4 HOH I 37 93 216 HOH HOH . E 4 HOH I 38 94 235 HOH HOH . E 4 HOH I 39 95 236 HOH HOH . E 4 HOH I 40 96 244 HOH HOH . E 4 HOH I 41 97 246 HOH HOH . E 4 HOH I 42 98 275 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . C 3 1.701 12.942 28.03 0.5 31.38 ? P PO4 500 E 1 HETATM 2 O O1 PO4 . . . C 3 2.623 14.042 27.631 0.5 24.03 ? O1 PO4 500 E 1 HETATM 3 O O2 PO4 . . . C 3 1.322 13.103 29.467 0.5 32.37 ? O2 PO4 500 E 1 HETATM 4 O O3 PO4 . . . C 3 0.458 12.949 27.202 0.5 31.2 ? O3 PO4 500 E 1 HETATM 5 O O4 PO4 . . . C 3 2.37 11.629 27.831 0.5 29.6 ? O4 PO4 500 E 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #