data_1SGF # _model_server_result.job_id 5N9_J6YgxM1IXpNbxrhkuQ _model_server_result.datetime_utc '2025-04-10 00:01:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1sgf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":511}' # _entry.id 1SGF # _exptl.entry_id 1SGF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1SGF _cell.length_a 95.68 _cell.length_b 96.59 _cell.length_c 147 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SGF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 K N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n G NAG 1 C 1 NAG ? 31 NAG 4 n G NAG 2 C 2 NAG ? 32 NAG 4 n H NAG 1 D 1 NAG ? 531 NAG 4 n H NAG 2 D 2 NAG ? 532 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 29 A CYS 42 1_555 A SG CYS 45 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf2 A SG CYS 131 A CYS 136 1_555 A SG CYS 198 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf3 A SG CYS 163 A CYS 168 1_555 A SG CYS 177 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf4 A SG CYS 188 A CYS 191 1_555 A SG CYS 213 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf5 B SG CYS 15 B CYS 15 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf6 B SG CYS 58 B CYS 58 1_555 B SG CYS 108 B CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf7 B SG CYS 68 B CYS 68 1_555 B SG CYS 110 B CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf8 C SG CYS 7 G CYS 22 1_555 C SG CYS 149 G CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 C SG CYS 26 G CYS 42 1_555 C SG CYS 42 G CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf10 C SG CYS 128 G CYS 136 1_555 C SG CYS 195 G CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf11 C SG CYS 160 G CYS 168 1_555 C SG CYS 174 G CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf12 C SG CYS 185 G CYS 191 1_555 C SG CYS 210 G CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf13 D SG CYS 29 X CYS 42 1_555 D SG CYS 45 X CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf14 D SG CYS 131 X CYS 136 1_555 D SG CYS 198 X CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf15 D SG CYS 163 X CYS 168 1_555 D SG CYS 177 X CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf16 D SG CYS 188 X CYS 191 1_555 D SG CYS 213 X CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf17 E SG CYS 15 Y CYS 15 1_555 E SG CYS 80 Y CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf18 E SG CYS 58 Y CYS 58 1_555 E SG CYS 108 Y CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf19 E SG CYS 68 Y CYS 68 1_555 E SG CYS 110 Y CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf20 F SG CYS 7 Z CYS 22 1_555 F SG CYS 149 Z CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf21 F SG CYS 26 Z CYS 42 1_555 F SG CYS 42 Z CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf22 F SG CYS 128 Z CYS 136 1_555 F SG CYS 195 Z CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf23 F SG CYS 160 Z CYS 168 1_555 F SG CYS 174 Z CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf24 F SG CYS 185 Z CYS 191 1_555 F SG CYS 210 Z CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 I C1 NAG . A NAG 11 1_555 A ND2 ASN 81 A ASN 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale2 C ND2 ASN 78 G ASN 95 1_555 G C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale3 D ND2 ASN 81 X ASN 95 1_555 K C1 NAG . X NAG 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale4 F ND2 ASN 78 Z ASN 95 1_555 H C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.532 ? covale ? covale5 G O4 NAG . C NAG 1 1_555 G C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.378 ? covale ? covale6 H O4 NAG . D NAG 1 1_555 H C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.414 ? metalc ? metalc1 J ZN ZN . A ZN 1 1_555 A OE1 GLU 61 A GLU 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.852 ? metalc ? metalc2 J ZN ZN . A ZN 1 1_555 A NE2 HIS 68 A HIS 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.843 ? metalc ? metalc3 J ZN ZN . A ZN 1 1_555 C NE2 HIS 207 G HIS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc4 J ZN ZN . A ZN 1 1_555 C OE1 GLU 212 G GLU 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc5 J ZN ZN . A ZN 1 1_555 C OE2 GLU 212 G GLU 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc6 D OD2 ASP 62 X ASP 77 1_555 L ZN ZN . X ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? metalc ? metalc7 D NE2 HIS 68 X HIS 82 1_555 L ZN ZN . X ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.814 ? metalc ? metalc8 L ZN ZN . X ZN 501 1_555 F NE2 HIS 207 Z HIS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.867 ? metalc ? metalc9 L ZN ZN . X ZN 501 1_555 F OE1 GLU 212 Z GLU 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc10 L ZN ZN . X ZN 501 1_555 F OE2 GLU 212 Z GLU 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 235 n n C1 O1 NAG sing 236 n n C1 O5 NAG sing 237 n n C1 H1 NAG sing 238 n n C2 C3 NAG sing 239 n n C2 N2 NAG sing 240 n n C2 H2 NAG sing 241 n n C3 C4 NAG sing 242 n n C3 O3 NAG sing 243 n n C3 H3 NAG sing 244 n n C4 C5 NAG sing 245 n n C4 O4 NAG sing 246 n n C4 H4 NAG sing 247 n n C5 C6 NAG sing 248 n n C5 O5 NAG sing 249 n n C5 H5 NAG sing 250 n n C6 O6 NAG sing 251 n n C6 H61 NAG sing 252 n n C6 H62 NAG sing 253 n n C7 C8 NAG sing 254 n n C7 N2 NAG sing 255 n n C7 O7 NAG doub 256 n n C8 H81 NAG sing 257 n n C8 H82 NAG sing 258 n n C8 H83 NAG sing 259 n n N2 HN2 NAG sing 260 n n O1 HO1 NAG sing 261 n n O3 HO3 NAG sing 262 n n O4 HO4 NAG sing 263 n n O6 HO6 NAG sing 264 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1SGF _atom_sites.fract_transf_matrix[1][1] 0.010452 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010353 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006803 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 NAG A 1 11 11 NAG NAG . J 6 ZN A 1 1 1 ZN ZN . K 5 NAG X 1 511 511 NAG NAG . L 6 ZN X 1 501 501 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . K 5 11.792 0.385 -43.219 1 84.02 ? C1 NAG 511 X 1 HETATM 2 C C2 NAG . . . K 5 11.73 -0.663 -44.332 1 84.02 ? C2 NAG 511 X 1 HETATM 3 C C3 NAG . . . K 5 10.302 -1.219 -44.454 1 84.02 ? C3 NAG 511 X 1 HETATM 4 C C4 NAG . . . K 5 9.82 -1.73 -43.097 1 84.02 ? C4 NAG 511 X 1 HETATM 5 C C5 NAG . . . K 5 9.959 -0.622 -42.051 1 84.02 ? C5 NAG 511 X 1 HETATM 6 C C6 NAG . . . K 5 9.6 -1.118 -40.67 1 84.02 ? C6 NAG 511 X 1 HETATM 7 C C7 NAG . . . K 5 12.653 -0.737 -46.58 1 84.02 ? C7 NAG 511 X 1 HETATM 8 C C8 NAG . . . K 5 13.01 0.076 -47.817 1 84.02 ? C8 NAG 511 X 1 HETATM 9 N N2 NAG . . . K 5 12.131 -0.031 -45.579 1 84.02 ? N2 NAG 511 X 1 HETATM 10 O O3 NAG . . . K 5 10.258 -2.278 -45.404 1 84.02 ? O3 NAG 511 X 1 HETATM 11 O O4 NAG . . . K 5 8.462 -2.147 -43.189 1 84.02 ? O4 NAG 511 X 1 HETATM 12 O O5 NAG . . . K 5 11.33 -0.167 -41.985 1 84.02 ? O5 NAG 511 X 1 HETATM 13 O O6 NAG . . . K 5 10.559 -2.067 -40.215 1 84.02 ? O6 NAG 511 X 1 HETATM 14 O O7 NAG . . . K 5 12.878 -1.943 -46.519 1 84.02 ? O7 NAG 511 X 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 362 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 14 #