data_1SGU
#
_model_server_result.job_id            8vI9x0plZvk-grkiRf3kkg 
_model_server_result.datetime_utc      '2025-06-27 02:33:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1sgu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":2632}' 
#
_entry.id    1SGU 
#
_exptl.entry_id    1SGU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              613.789 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'N-[2(R)-HYDROXY-1(S)-INDANYL]-5-[(2(S)-TERTIARY BUTYLAMINOCARBONYL)-4(3-PYRIDYLMETHYL)PIPERAZINO]-4(S)-HYDROXY-2(R)-PHENYLMETHYLPENTANAMIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1SGU 
_cell.length_a            61.573 
_cell.length_b            61.574 
_cell.length_c            84.109 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1SGU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C36 H47 N5 O4' 
_chem_comp.formula_weight    613.789 
_chem_comp.id                MK1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'N-[2(R)-HYDROXY-1(S)-INDANYL]-5-[(2(S)-TERTIARY BUTYLAMINOCARBONYL)-4(3-PYRIDYLMETHYL)PIPERAZINO]-4(S)-HYDROXY-2(R)-PHENYLMETHYLPENTANAMIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     INDINAVIR 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C1 MK1 sing 237 n n 
N1 C9 MK1 sing 238 n n 
N1 C31 MK1 sing 239 n n 
C1 C2 MK1 sing 240 n n 
C1 H11A MK1 sing 241 n n 
C1 H12 MK1 sing 242 n n 
C2 C3 MK1 sing 243 n n 
C2 N3 MK1 sing 244 n n 
C2 H2 MK1 sing 245 n n 
C3 O1 MK1 doub 246 n n 
C3 N2 MK1 sing 247 n n 
N2 C4 MK1 sing 248 n n 
N2 HN2 MK1 sing 249 n n 
C4 C5 MK1 sing 250 n n 
C4 C6 MK1 sing 251 n n 
C4 C7 MK1 sing 252 n n 
C5 H51 MK1 sing 253 n n 
C5 H52 MK1 sing 254 n n 
C5 H53 MK1 sing 255 n n 
C6 H61 MK1 sing 256 n n 
C6 H62 MK1 sing 257 n n 
C6 H63 MK1 sing 258 n n 
C7 H71 MK1 sing 259 n n 
C7 H72 MK1 sing 260 n n 
C7 H73 MK1 sing 261 n n 
N3 C8 MK1 sing 262 n n 
N3 C10 MK1 sing 263 n n 
C8 C9 MK1 sing 264 n n 
C8 H81 MK1 sing 265 n n 
C8 H82 MK1 sing 266 n n 
C9 H91 MK1 sing 267 n n 
C9 H92 MK1 sing 268 n n 
C10 C11 MK1 sing 269 n n 
C10 H101 MK1 sing 270 n n 
C10 H102 MK1 sing 271 n n 
C11 O2 MK1 sing 272 n n 
C11 C12 MK1 sing 273 n n 
C11 H11 MK1 sing 274 n n 
O2 HO2 MK1 sing 275 n n 
C12 C13 MK1 sing 276 n n 
C12 H121 MK1 sing 277 n n 
C12 H122 MK1 sing 278 n n 
C13 C14 MK1 sing 279 n n 
C13 C21 MK1 sing 280 n n 
C13 H13 MK1 sing 281 n n 
C14 C15 MK1 sing 282 n n 
C14 H141 MK1 sing 283 n n 
C14 H142 MK1 sing 284 n n 
C15 C16 MK1 doub 285 n y 
C15 C20 MK1 sing 286 n y 
C16 C17 MK1 sing 287 n y 
C16 H16 MK1 sing 288 n n 
C17 C18 MK1 doub 289 n y 
C17 H17 MK1 sing 290 n n 
C18 C19 MK1 sing 291 n y 
C18 H18 MK1 sing 292 n n 
C19 C20 MK1 doub 293 n y 
C19 H19 MK1 sing 294 n n 
C20 H20 MK1 sing 295 n n 
C21 O3 MK1 doub 296 n n 
C21 N4 MK1 sing 297 n n 
N4 C22 MK1 sing 298 n n 
N4 HN4 MK1 sing 299 n n 
C22 C23 MK1 sing 300 n n 
C22 C30 MK1 sing 301 n n 
C22 H22 MK1 sing 302 n n 
C23 O4 MK1 sing 303 n n 
C23 C24 MK1 sing 304 n n 
C23 H23 MK1 sing 305 n n 
O4 HO4 MK1 sing 306 n n 
C24 C25 MK1 sing 307 n n 
C24 H241 MK1 sing 308 n n 
C24 H242 MK1 sing 309 n n 
C25 C26 MK1 doub 310 n y 
C25 C30 MK1 sing 311 n y 
C26 C27 MK1 sing 312 n y 
C26 H26 MK1 sing 313 n n 
C27 C28 MK1 doub 314 n y 
C27 H27 MK1 sing 315 n n 
C28 C29 MK1 sing 316 n y 
C28 H28 MK1 sing 317 n n 
C29 C30 MK1 doub 318 n y 
C29 H29 MK1 sing 319 n n 
C31 C32 MK1 sing 320 n n 
C31 H311 MK1 sing 321 n n 
C31 H312 MK1 sing 322 n n 
C32 C33 MK1 sing 323 n y 
C32 C36 MK1 doub 324 n y 
C33 N5 MK1 doub 325 n y 
C33 H33 MK1 sing 326 n n 
N5 C34 MK1 sing 327 n y 
C34 C35 MK1 doub 328 n y 
C34 H34 MK1 sing 329 n n 
C35 C36 MK1 sing 330 n y 
C35 H35 MK1 sing 331 n n 
C36 H36 MK1 sing 332 n n 
#
_atom_sites.entry_id                     1SGU 
_atom_sites.fract_transf_matrix[1][1]    0.016241 
_atom_sites.fract_transf_matrix[1][2]    0.009377 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018753 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011889 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MK1 B 1 2632 2632 MK1 MK1 . 
D 3 HOH A 1 100 3 HOH HOH . 
D 3 HOH A 2 101 5 HOH HOH . 
D 3 HOH A 3 102 6 HOH HOH . 
D 3 HOH A 4 103 7 HOH HOH . 
D 3 HOH A 5 104 11 HOH HOH . 
D 3 HOH A 6 105 15 HOH HOH . 
D 3 HOH A 7 106 18 HOH HOH . 
D 3 HOH A 8 107 19 HOH HOH . 
D 3 HOH A 9 108 23 HOH HOH . 
D 3 HOH A 10 109 28 HOH HOH . 
D 3 HOH A 11 110 29 HOH HOH . 
D 3 HOH A 12 111 32 HOH HOH . 
D 3 HOH A 13 112 33 HOH HOH . 
D 3 HOH A 14 113 35 HOH HOH . 
D 3 HOH A 15 114 37 HOH HOH . 
D 3 HOH A 16 115 40 HOH HOH . 
D 3 HOH A 17 116 42 HOH HOH . 
D 3 HOH A 18 117 45 HOH HOH . 
D 3 HOH A 19 118 46 HOH HOH . 
D 3 HOH A 20 119 51 HOH HOH . 
D 3 HOH A 21 120 54 HOH HOH . 
D 3 HOH A 22 121 57 HOH HOH . 
D 3 HOH A 23 122 59 HOH HOH . 
D 3 HOH A 24 123 60 HOH HOH . 
D 3 HOH A 25 124 62 HOH HOH . 
D 3 HOH A 26 125 68 HOH HOH . 
D 3 HOH A 27 126 72 HOH HOH . 
D 3 HOH A 28 127 83 HOH HOH . 
D 3 HOH A 29 128 84 HOH HOH . 
D 3 HOH A 30 129 85 HOH HOH . 
D 3 HOH A 31 130 86 HOH HOH . 
D 3 HOH A 32 131 88 HOH HOH . 
D 3 HOH A 33 132 90 HOH HOH . 
D 3 HOH A 34 133 91 HOH HOH . 
D 3 HOH A 35 134 94 HOH HOH . 
D 3 HOH A 36 135 96 HOH HOH . 
D 3 HOH A 37 136 106 HOH HOH . 
D 3 HOH A 38 137 107 HOH HOH . 
D 3 HOH A 39 138 108 HOH HOH . 
D 3 HOH A 40 139 109 HOH HOH . 
E 3 HOH B 1 2633 2 HOH HOH . 
E 3 HOH B 2 2634 4 HOH HOH . 
E 3 HOH B 3 2635 8 HOH HOH . 
E 3 HOH B 4 2636 9 HOH HOH . 
E 3 HOH B 5 2637 10 HOH HOH . 
E 3 HOH B 6 2638 12 HOH HOH . 
E 3 HOH B 7 2639 13 HOH HOH . 
E 3 HOH B 8 2640 14 HOH HOH . 
E 3 HOH B 9 2641 16 HOH HOH . 
E 3 HOH B 10 2642 17 HOH HOH . 
E 3 HOH B 11 2643 20 HOH HOH . 
E 3 HOH B 12 2644 21 HOH HOH . 
E 3 HOH B 13 2645 22 HOH HOH . 
E 3 HOH B 14 2646 24 HOH HOH . 
E 3 HOH B 15 2647 26 HOH HOH . 
E 3 HOH B 16 2648 30 HOH HOH . 
E 3 HOH B 17 2649 31 HOH HOH . 
E 3 HOH B 18 2650 36 HOH HOH . 
E 3 HOH B 19 2651 38 HOH HOH . 
E 3 HOH B 20 2652 39 HOH HOH . 
E 3 HOH B 21 2653 41 HOH HOH . 
E 3 HOH B 22 2654 44 HOH HOH . 
E 3 HOH B 23 2655 48 HOH HOH . 
E 3 HOH B 24 2656 49 HOH HOH . 
E 3 HOH B 25 2657 50 HOH HOH . 
E 3 HOH B 26 2658 52 HOH HOH . 
E 3 HOH B 27 2659 53 HOH HOH . 
E 3 HOH B 28 2660 55 HOH HOH . 
E 3 HOH B 29 2661 56 HOH HOH . 
E 3 HOH B 30 2662 58 HOH HOH . 
E 3 HOH B 31 2663 63 HOH HOH . 
E 3 HOH B 32 2664 65 HOH HOH . 
E 3 HOH B 33 2665 66 HOH HOH . 
E 3 HOH B 34 2666 67 HOH HOH . 
E 3 HOH B 35 2667 69 HOH HOH . 
E 3 HOH B 36 2668 74 HOH HOH . 
E 3 HOH B 37 2669 75 HOH HOH . 
E 3 HOH B 38 2670 77 HOH HOH . 
E 3 HOH B 39 2671 78 HOH HOH . 
E 3 HOH B 40 2672 80 HOH HOH . 
E 3 HOH B 41 2673 81 HOH HOH . 
E 3 HOH B 42 2674 87 HOH HOH . 
E 3 HOH B 43 2675 92 HOH HOH . 
E 3 HOH B 44 2676 98 HOH HOH . 
E 3 HOH B 45 2677 100 HOH HOH . 
E 3 HOH B 46 2678 101 HOH HOH . 
E 3 HOH B 47 2679 102 HOH HOH . 
E 3 HOH B 48 2680 103 HOH HOH . 
E 3 HOH B 49 2681 105 HOH HOH . 
E 3 HOH B 50 2682 111 HOH HOH . 
E 3 HOH B 51 2683 112 HOH HOH . 
E 3 HOH B 52 2684 116 HOH HOH . 
E 3 HOH B 53 2685 119 HOH HOH . 
E 3 HOH B 54 2686 122 HOH HOH . 
E 3 HOH B 55 2687 123 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 MK1 . . . C 2 17.923 4.536 12.115 1 31.79 ? N1 MK1 2632 B 1 
HETATM 2 C C1 MK1 . . . C 2 17.532 3.337 12.909 1 31.83 ? C1 MK1 2632 B 1 
HETATM 3 C C2 MK1 . . . C 2 18.596 2.235 13.034 1 29.06 ? C2 MK1 2632 B 1 
HETATM 4 C C3 MK1 . . . C 2 17.994 1.105 13.87 1 32.28 ? C3 MK1 2632 B 1 
HETATM 5 O O1 MK1 . . . C 2 17.277 0.243 13.326 1 31.05 ? O1 MK1 2632 B 1 
HETATM 6 N N2 MK1 . . . C 2 18.29 1.099 15.187 1 29.31 ? N2 MK1 2632 B 1 
HETATM 7 C C4 MK1 . . . C 2 17.819 0.052 16.242 1 29.47 ? C4 MK1 2632 B 1 
HETATM 8 C C5 MK1 . . . C 2 18.372 0.401 17.657 1 28.99 ? C5 MK1 2632 B 1 
HETATM 9 C C6 MK1 . . . C 2 18.461 -1.348 16.067 1 28.92 ? C6 MK1 2632 B 1 
HETATM 10 C C7 MK1 . . . C 2 16.195 -0.029 16.29 1 29.92 ? C7 MK1 2632 B 1 
HETATM 11 N N3 MK1 . . . C 2 19.007 1.822 11.658 1 28.65 ? N3 MK1 2632 B 1 
HETATM 12 C C8 MK1 . . . C 2 19.348 2.958 10.745 1 27.15 ? C8 MK1 2632 B 1 
HETATM 13 C C9 MK1 . . . C 2 18.267 4.075 10.729 1 30.21 ? C9 MK1 2632 B 1 
HETATM 14 C C10 MK1 . . . C 2 20.07 0.789 11.67 1 29.63 ? C10 MK1 2632 B 1 
HETATM 15 C C11 MK1 . . . C 2 19.96 -0.198 10.523 1 29.28 ? C11 MK1 2632 B 1 
HETATM 16 O O2 MK1 . . . C 2 21.271 -0.568 10.081 1 27.93 ? O2 MK1 2632 B 1 
HETATM 17 C C12 MK1 . . . C 2 19.251 -1.527 10.842 1 29.45 ? C12 MK1 2632 B 1 
HETATM 18 C C13 MK1 . . . C 2 19.136 -2.523 9.692 1 29.76 ? C13 MK1 2632 B 1 
HETATM 19 C C14 MK1 . . . C 2 18.49 -3.773 10.326 1 28.51 ? C14 MK1 2632 B 1 
HETATM 20 C C15 MK1 . . . C 2 18.325 -4.913 9.36 1 28.5 ? C15 MK1 2632 B 1 
HETATM 21 C C16 MK1 . . . C 2 19.443 -5.565 8.756 1 28.58 ? C16 MK1 2632 B 1 
HETATM 22 C C17 MK1 . . . C 2 19.226 -6.636 7.842 1 30.3 ? C17 MK1 2632 B 1 
HETATM 23 C C18 MK1 . . . C 2 17.896 -7.052 7.533 1 28.91 ? C18 MK1 2632 B 1 
HETATM 24 C C19 MK1 . . . C 2 16.791 -6.403 8.134 1 29.59 ? C19 MK1 2632 B 1 
HETATM 25 C C20 MK1 . . . C 2 16.998 -5.338 9.044 1 28.36 ? C20 MK1 2632 B 1 
HETATM 26 C C21 MK1 . . . C 2 18.282 -1.963 8.523 1 29.81 ? C21 MK1 2632 B 1 
HETATM 27 O O3 MK1 . . . C 2 17.44 -1.084 8.681 1 35.62 ? O3 MK1 2632 B 1 
HETATM 28 N N4 MK1 . . . C 2 18.525 -2.517 7.341 1 31.29 ? N4 MK1 2632 B 1 
HETATM 29 C C22 MK1 . . . C 2 17.866 -2.168 6.073 1 27.33 ? C22 MK1 2632 B 1 
HETATM 30 C C23 MK1 . . . C 2 18.383 -3.089 4.937 1 27.41 ? C23 MK1 2632 B 1 
HETATM 31 O O4 MK1 . . . C 2 19.747 -3.454 5.154 1 21.85 ? O4 MK1 2632 B 1 
HETATM 32 C C24 MK1 . . . C 2 18.033 -2.321 3.68 1 27.26 ? C24 MK1 2632 B 1 
HETATM 33 C C25 MK1 . . . C 2 18.274 -0.861 3.918 1 26.72 ? C25 MK1 2632 B 1 
HETATM 34 C C26 MK1 . . . C 2 18.54 0.251 3.105 1 27.27 ? C26 MK1 2632 B 1 
HETATM 35 C C27 MK1 . . . C 2 18.716 1.509 3.73 1 29.03 ? C27 MK1 2632 B 1 
HETATM 36 C C28 MK1 . . . C 2 18.629 1.659 5.15 1 27.01 ? C28 MK1 2632 B 1 
HETATM 37 C C29 MK1 . . . C 2 18.359 0.546 6.002 1 28.4 ? C29 MK1 2632 B 1 
HETATM 38 C C30 MK1 . . . C 2 18.164 -0.763 5.484 1 26.55 ? C30 MK1 2632 B 1 
HETATM 39 C C31 MK1 . . . C 2 16.904 5.626 12.176 1 33.42 ? C31 MK1 2632 B 1 
HETATM 40 C C32 MK1 . . . C 2 16.436 6.282 13.543 1 36.04 ? C32 MK1 2632 B 1 
HETATM 41 C C33 MK1 . . . C 2 17.275 7.107 14.303 1 36.86 ? C33 MK1 2632 B 1 
HETATM 42 N N5 MK1 . . . C 2 16.858 7.729 15.587 1 39.74 ? N5 MK1 2632 B 1 
HETATM 43 C C34 MK1 . . . C 2 15.518 7.42 15.995 1 39.44 ? C34 MK1 2632 B 1 
HETATM 44 C C35 MK1 . . . C 2 14.661 6.601 15.255 1 38.76 ? C35 MK1 2632 B 1 
HETATM 45 C C36 MK1 . . . C 2 15.122 6.033 14.032 1 37.85 ? C36 MK1 2632 B 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           538 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           45 
#