data_1SIB # _model_server_result.job_id B8cnMWibWiqcFnkIahyw-w _model_server_result.datetime_utc '2025-08-31 23:54:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1sib # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":277}' # _entry.id 1SIB # _exptl.entry_id 1SIB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1SIB _cell.length_a 84.9 _cell.length_b 84.9 _cell.length_c 89.1 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SIB _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLN 2 E GLN 2 1_555 D CA CA . E CA 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.023 ? metalc ? metalc2 A OD1 ASP 41 E ASP 41 1_555 D CA CA . E CA 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? metalc ? metalc3 A OD2 ASP 41 E ASP 41 1_555 D CA CA . E CA 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.945 ? metalc ? metalc4 A O LEU 75 E LEU 75 1_555 D CA CA . E CA 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc5 A OD1 ASN 77 E ASN 77 1_555 D CA CA . E CA 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.156 ? metalc ? metalc6 A O ILE 79 E ILE 79 1_555 D CA CA . E CA 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? metalc ? metalc7 A O VAL 81 E VAL 81 1_555 D CA CA . E CA 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc8 A O GLY 169 E GLY 169 1_555 C CA CA . E CA 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? metalc ? metalc9 A O TYR 171 E TYR 171 1_555 C CA CA . E CA 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.087 ? metalc ? metalc10 A O VAL 174 E VAL 174 1_555 C CA CA . E CA 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? metalc ? metalc11 A O GLU 195 E GLU 195 1_555 C CA CA . E CA 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.082 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1SIB _atom_sites.fract_transf_matrix[1][1] 0.011779 _atom_sites.fract_transf_matrix[1][2] 0.0068 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013601 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011223 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA E 1 276 276 CA CA . D 3 CA E 1 277 277 CA CA . E 4 HOH E 1 278 1 HOH HOH . E 4 HOH E 2 279 2 HOH HOH . E 4 HOH E 3 280 3 HOH HOH . E 4 HOH E 4 281 4 HOH HOH . E 4 HOH E 5 282 5 HOH HOH . E 4 HOH E 6 283 6 HOH HOH . E 4 HOH E 7 284 8 HOH HOH . E 4 HOH E 8 285 9 HOH HOH . E 4 HOH E 9 286 10 HOH HOH . E 4 HOH E 10 287 11 HOH HOH . E 4 HOH E 11 288 12 HOH HOH . E 4 HOH E 12 289 15 HOH HOH . E 4 HOH E 13 290 16 HOH HOH . E 4 HOH E 14 291 18 HOH HOH . E 4 HOH E 15 292 19 HOH HOH . E 4 HOH E 16 293 20 HOH HOH . E 4 HOH E 17 294 21 HOH HOH . E 4 HOH E 18 295 24 HOH HOH . E 4 HOH E 19 296 25 HOH HOH . E 4 HOH E 20 297 26 HOH HOH . E 4 HOH E 21 298 28 HOH HOH . E 4 HOH E 22 299 29 HOH HOH . E 4 HOH E 23 300 30 HOH HOH . E 4 HOH E 24 301 32 HOH HOH . E 4 HOH E 25 302 33 HOH HOH . E 4 HOH E 26 303 36 HOH HOH . E 4 HOH E 27 304 37 HOH HOH . E 4 HOH E 28 305 38 HOH HOH . E 4 HOH E 29 306 40 HOH HOH . E 4 HOH E 30 307 41 HOH HOH . E 4 HOH E 31 308 42 HOH HOH . E 4 HOH E 32 309 44 HOH HOH . E 4 HOH E 33 310 45 HOH HOH . E 4 HOH E 34 311 46 HOH HOH . E 4 HOH E 35 312 47 HOH HOH . E 4 HOH E 36 313 49 HOH HOH . E 4 HOH E 37 314 50 HOH HOH . E 4 HOH E 38 315 51 HOH HOH . E 4 HOH E 39 316 55 HOH HOH . E 4 HOH E 40 317 56 HOH HOH . E 4 HOH E 41 318 58 HOH HOH . E 4 HOH E 42 319 59 HOH HOH . E 4 HOH E 43 320 60 HOH HOH . E 4 HOH E 44 321 61 HOH HOH . E 4 HOH E 45 322 62 HOH HOH . E 4 HOH E 46 323 63 HOH HOH . E 4 HOH E 47 324 64 HOH HOH . E 4 HOH E 48 325 65 HOH HOH . E 4 HOH E 49 326 66 HOH HOH . E 4 HOH E 50 327 67 HOH HOH . E 4 HOH E 51 328 68 HOH HOH . E 4 HOH E 52 329 70 HOH HOH . E 4 HOH E 53 330 71 HOH HOH . E 4 HOH E 54 331 74 HOH HOH . E 4 HOH E 55 332 75 HOH HOH . E 4 HOH E 56 333 76 HOH HOH . E 4 HOH E 57 334 77 HOH HOH . E 4 HOH E 58 335 78 HOH HOH . E 4 HOH E 59 336 79 HOH HOH . E 4 HOH E 60 337 80 HOH HOH . E 4 HOH E 61 338 81 HOH HOH . E 4 HOH E 62 339 82 HOH HOH . E 4 HOH E 63 340 83 HOH HOH . E 4 HOH E 64 341 84 HOH HOH . E 4 HOH E 65 342 85 HOH HOH . E 4 HOH E 66 343 86 HOH HOH . E 4 HOH E 67 344 88 HOH HOH . E 4 HOH E 68 345 90 HOH HOH . E 4 HOH E 69 346 91 HOH HOH . E 4 HOH E 70 347 92 HOH HOH . E 4 HOH E 71 348 93 HOH HOH . E 4 HOH E 72 349 94 HOH HOH . E 4 HOH E 73 350 95 HOH HOH . E 4 HOH E 74 351 96 HOH HOH . E 4 HOH E 75 352 97 HOH HOH . E 4 HOH E 76 353 98 HOH HOH . E 4 HOH E 77 354 99 HOH HOH . E 4 HOH E 78 355 100 HOH HOH . E 4 HOH E 79 356 101 HOH HOH . E 4 HOH E 80 357 102 HOH HOH . E 4 HOH E 81 358 104 HOH HOH . E 4 HOH E 82 359 105 HOH HOH . E 4 HOH E 83 360 106 HOH HOH . E 4 HOH E 84 361 107 HOH HOH . E 4 HOH E 85 362 109 HOH HOH . E 4 HOH E 86 363 110 HOH HOH . E 4 HOH E 87 364 111 HOH HOH . E 4 HOH E 88 365 112 HOH HOH . E 4 HOH E 89 366 113 HOH HOH . E 4 HOH E 90 367 117 HOH HOH . E 4 HOH E 91 368 118 HOH HOH . E 4 HOH E 92 369 120 HOH HOH . E 4 HOH E 93 370 121 HOH HOH . E 4 HOH E 94 371 123 HOH HOH . E 4 HOH E 95 372 124 HOH HOH . E 4 HOH E 96 373 125 HOH HOH . E 4 HOH E 97 374 126 HOH HOH . E 4 HOH E 98 375 127 HOH HOH . E 4 HOH E 99 376 128 HOH HOH . E 4 HOH E 100 377 129 HOH HOH . E 4 HOH E 101 378 130 HOH HOH . E 4 HOH E 102 379 131 HOH HOH . E 4 HOH E 103 380 133 HOH HOH . E 4 HOH E 104 381 134 HOH HOH . E 4 HOH E 105 382 135 HOH HOH . E 4 HOH E 106 383 137 HOH HOH . E 4 HOH E 107 384 138 HOH HOH . E 4 HOH E 108 385 139 HOH HOH . E 4 HOH E 109 386 140 HOH HOH . E 4 HOH E 110 387 142 HOH HOH . E 4 HOH E 111 388 143 HOH HOH . E 4 HOH E 112 389 144 HOH HOH . E 4 HOH E 113 390 145 HOH HOH . E 4 HOH E 114 391 146 HOH HOH . E 4 HOH E 115 392 147 HOH HOH . E 4 HOH E 116 393 148 HOH HOH . E 4 HOH E 117 394 149 HOH HOH . E 4 HOH E 118 395 150 HOH HOH . E 4 HOH E 119 396 151 HOH HOH . E 4 HOH E 120 397 152 HOH HOH . E 4 HOH E 121 398 153 HOH HOH . E 4 HOH E 122 399 154 HOH HOH . E 4 HOH E 123 400 155 HOH HOH . E 4 HOH E 124 401 156 HOH HOH . E 4 HOH E 125 402 157 HOH HOH . E 4 HOH E 126 403 158 HOH HOH . E 4 HOH E 127 404 159 HOH HOH . E 4 HOH E 128 405 160 HOH HOH . E 4 HOH E 129 406 161 HOH HOH . E 4 HOH E 130 407 162 HOH HOH . E 4 HOH E 131 408 166 HOH HOH . E 4 HOH E 132 409 167 HOH HOH . E 4 HOH E 133 410 168 HOH HOH . E 4 HOH E 134 411 169 HOH HOH . E 4 HOH E 135 412 170 HOH HOH . E 4 HOH E 136 413 171 HOH HOH . E 4 HOH E 137 414 172 HOH HOH . E 4 HOH E 138 415 174 HOH HOH . E 4 HOH E 139 416 176 HOH HOH . E 4 HOH E 140 417 177 HOH HOH . E 4 HOH E 141 418 178 HOH HOH . E 4 HOH E 142 419 179 HOH HOH . E 4 HOH E 143 420 180 HOH HOH . E 4 HOH E 144 421 181 HOH HOH . E 4 HOH E 145 422 182 HOH HOH . E 4 HOH E 146 423 184 HOH HOH . E 4 HOH E 147 424 185 HOH HOH . E 4 HOH E 148 425 186 HOH HOH . E 4 HOH E 149 426 187 HOH HOH . E 4 HOH E 150 427 188 HOH HOH . E 4 HOH E 151 428 189 HOH HOH . E 4 HOH E 152 429 190 HOH HOH . E 4 HOH E 153 430 191 HOH HOH . E 4 HOH E 154 431 193 HOH HOH . E 4 HOH E 155 432 194 HOH HOH . F 4 HOH I 1 71 7 HOH HOH . F 4 HOH I 2 72 13 HOH HOH . F 4 HOH I 3 73 14 HOH HOH . F 4 HOH I 4 74 17 HOH HOH . F 4 HOH I 5 75 22 HOH HOH . F 4 HOH I 6 76 23 HOH HOH . F 4 HOH I 7 77 27 HOH HOH . F 4 HOH I 8 78 31 HOH HOH . F 4 HOH I 9 79 34 HOH HOH . F 4 HOH I 10 80 35 HOH HOH . F 4 HOH I 11 81 39 HOH HOH . F 4 HOH I 12 82 43 HOH HOH . F 4 HOH I 13 83 48 HOH HOH . F 4 HOH I 14 84 52 HOH HOH . F 4 HOH I 15 85 53 HOH HOH . F 4 HOH I 16 86 54 HOH HOH . F 4 HOH I 17 87 57 HOH HOH . F 4 HOH I 18 88 69 HOH HOH . F 4 HOH I 19 89 72 HOH HOH . F 4 HOH I 20 90 73 HOH HOH . F 4 HOH I 21 91 87 HOH HOH . F 4 HOH I 22 92 89 HOH HOH . F 4 HOH I 23 93 103 HOH HOH . F 4 HOH I 24 94 108 HOH HOH . F 4 HOH I 25 95 114 HOH HOH . F 4 HOH I 26 96 115 HOH HOH . F 4 HOH I 27 97 116 HOH HOH . F 4 HOH I 28 98 119 HOH HOH . F 4 HOH I 29 99 122 HOH HOH . F 4 HOH I 30 100 132 HOH HOH . F 4 HOH I 31 101 136 HOH HOH . F 4 HOH I 32 102 141 HOH HOH . F 4 HOH I 33 103 163 HOH HOH . F 4 HOH I 34 104 164 HOH HOH . F 4 HOH I 35 105 165 HOH HOH . F 4 HOH I 36 106 173 HOH HOH . F 4 HOH I 37 107 175 HOH HOH . F 4 HOH I 38 108 183 HOH HOH . F 4 HOH I 39 109 192 HOH HOH . F 4 HOH I 40 110 195 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 33.626 _atom_site.Cartn_y 36.568 _atom_site.Cartn_z 60.226 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 53.28 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 277 _atom_site.auth_asym_id E _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #