data_1SIR
#
_model_server_result.job_id            xXu8f5zTEvQWHerE6pAM2Q 
_model_server_result.datetime_utc      '2024-11-14 12:11:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1sir 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":399}' 
#
_entry.id    1SIR 
#
_exptl.entry_id    1SIR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1SIR 
_cell.length_a            116.722 
_cell.length_b            116.722 
_cell.length_c            128.034 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1SIR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        181 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 64 2 2' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 -58.361 101.084217 0 
3 'crystal symmetry operation' 9_554 -x,-x+y,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -42.678 
4 'crystal symmetry operation' 12_564 x,x-y+1,-z-1/3 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -58.361 101.084217 -42.678 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     1SIR 
_atom_sites.fract_transf_matrix[1][1]    0.008567 
_atom_sites.fract_transf_matrix[1][2]    0.004946 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009893 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00781 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FAD A 1 399 399 FAD FAD . 
C 3 NBC A 1 400 400 NBC NBC . 
D 4 HOH A 1 501 501 HOH HOH . 
D 4 HOH A 2 502 502 HOH HOH . 
D 4 HOH A 3 503 503 HOH HOH . 
D 4 HOH A 4 504 504 HOH HOH . 
D 4 HOH A 5 505 505 HOH HOH . 
D 4 HOH A 6 506 506 HOH HOH . 
D 4 HOH A 7 507 507 HOH HOH . 
D 4 HOH A 8 508 508 HOH HOH . 
D 4 HOH A 9 509 509 HOH HOH . 
D 4 HOH A 10 510 510 HOH HOH . 
D 4 HOH A 11 511 511 HOH HOH . 
D 4 HOH A 12 512 512 HOH HOH . 
D 4 HOH A 13 513 513 HOH HOH . 
D 4 HOH A 14 514 514 HOH HOH . 
D 4 HOH A 15 515 515 HOH HOH . 
D 4 HOH A 16 516 516 HOH HOH . 
D 4 HOH A 17 517 517 HOH HOH . 
D 4 HOH A 18 518 518 HOH HOH . 
D 4 HOH A 19 519 519 HOH HOH . 
D 4 HOH A 20 520 520 HOH HOH . 
D 4 HOH A 21 521 521 HOH HOH . 
D 4 HOH A 22 522 522 HOH HOH . 
D 4 HOH A 23 523 523 HOH HOH . 
D 4 HOH A 24 524 524 HOH HOH . 
D 4 HOH A 25 525 525 HOH HOH . 
D 4 HOH A 26 526 526 HOH HOH . 
D 4 HOH A 27 527 527 HOH HOH . 
D 4 HOH A 28 528 528 HOH HOH . 
D 4 HOH A 29 529 529 HOH HOH . 
D 4 HOH A 30 530 530 HOH HOH . 
D 4 HOH A 31 531 531 HOH HOH . 
D 4 HOH A 32 532 532 HOH HOH . 
D 4 HOH A 33 533 533 HOH HOH . 
D 4 HOH A 34 534 534 HOH HOH . 
D 4 HOH A 35 535 535 HOH HOH . 
D 4 HOH A 36 536 536 HOH HOH . 
D 4 HOH A 37 537 537 HOH HOH . 
D 4 HOH A 38 538 538 HOH HOH . 
D 4 HOH A 39 539 539 HOH HOH . 
D 4 HOH A 40 540 540 HOH HOH . 
D 4 HOH A 41 541 541 HOH HOH . 
D 4 HOH A 42 542 542 HOH HOH . 
D 4 HOH A 43 543 543 HOH HOH . 
D 4 HOH A 44 544 544 HOH HOH . 
D 4 HOH A 45 545 545 HOH HOH . 
D 4 HOH A 46 546 546 HOH HOH . 
D 4 HOH A 47 547 547 HOH HOH . 
D 4 HOH A 48 548 548 HOH HOH . 
D 4 HOH A 49 549 549 HOH HOH . 
D 4 HOH A 50 550 550 HOH HOH . 
D 4 HOH A 51 551 551 HOH HOH . 
D 4 HOH A 52 552 552 HOH HOH . 
D 4 HOH A 53 553 553 HOH HOH . 
D 4 HOH A 54 554 554 HOH HOH . 
D 4 HOH A 55 555 555 HOH HOH . 
D 4 HOH A 56 556 556 HOH HOH . 
D 4 HOH A 57 557 557 HOH HOH . 
D 4 HOH A 58 558 558 HOH HOH . 
D 4 HOH A 59 559 559 HOH HOH . 
D 4 HOH A 60 560 560 HOH HOH . 
D 4 HOH A 61 561 561 HOH HOH . 
D 4 HOH A 62 562 562 HOH HOH . 
D 4 HOH A 63 563 563 HOH HOH . 
D 4 HOH A 64 564 564 HOH HOH . 
D 4 HOH A 65 565 565 HOH HOH . 
D 4 HOH A 66 566 566 HOH HOH . 
D 4 HOH A 67 567 567 HOH HOH . 
D 4 HOH A 68 568 568 HOH HOH . 
D 4 HOH A 69 569 569 HOH HOH . 
D 4 HOH A 70 570 570 HOH HOH . 
D 4 HOH A 71 571 571 HOH HOH . 
D 4 HOH A 72 572 572 HOH HOH . 
D 4 HOH A 73 573 573 HOH HOH . 
D 4 HOH A 74 574 574 HOH HOH . 
D 4 HOH A 75 575 575 HOH HOH . 
D 4 HOH A 76 576 576 HOH HOH . 
D 4 HOH A 77 577 577 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . B 2 -14.86 55.479 -39.856 1 9.8 ? PA FAD 399 A 1 
HETATM 2 O O1A FAD . . . B 2 -14.597 54.181 -40.544 1 13.83 ? O1A FAD 399 A 1 
HETATM 3 O O2A FAD . . . B 2 -15.075 56.644 -40.763 1 10.38 ? O2A FAD 399 A 1 
HETATM 4 O O5B FAD . . . B 2 -16.148 55.356 -38.927 1 7.42 ? O5B FAD 399 A 1 
HETATM 5 C C5B FAD . . . B 2 -16.695 56.401 -38.122 1 4.33 ? C5B FAD 399 A 1 
HETATM 6 C C4B FAD . . . B 2 -17.986 55.985 -37.331 1 7.96 ? C4B FAD 399 A 1 
HETATM 7 O O4B FAD . . . B 2 -18.868 55.609 -38.398 1 7.7 ? O4B FAD 399 A 1 
HETATM 8 C C3B FAD . . . B 2 -17.865 54.767 -36.388 1 6 ? C3B FAD 399 A 1 
HETATM 9 O O3B FAD . . . B 2 -18.847 54.933 -35.279 1 7.72 ? O3B FAD 399 A 1 
HETATM 10 C C2B FAD . . . B 2 -18.296 53.608 -37.333 1 9.28 ? C2B FAD 399 A 1 
HETATM 11 O O2B FAD . . . B 2 -18.831 52.441 -36.683 1 4.71 ? O2B FAD 399 A 1 
HETATM 12 C C1B FAD . . . B 2 -19.334 54.26 -38.252 1 4.33 ? C1B FAD 399 A 1 
HETATM 13 N N9A FAD . . . B 2 -19.482 53.589 -39.584 1 6.49 ? N9A FAD 399 A 1 
HETATM 14 C C8A FAD . . . B 2 -18.614 53.444 -40.682 1 10.36 ? C8A FAD 399 A 1 
HETATM 15 N N7A FAD . . . B 2 -19.109 52.783 -41.682 1 10.9 ? N7A FAD 399 A 1 
HETATM 16 C C5A FAD . . . B 2 -20.356 52.456 -41.273 1 8.11 ? C5A FAD 399 A 1 
HETATM 17 C C6A FAD . . . B 2 -21.497 51.716 -41.894 1 8.84 ? C6A FAD 399 A 1 
HETATM 18 N N6A FAD . . . B 2 -21.413 51.201 -43.109 1 5.92 ? N6A FAD 399 A 1 
HETATM 19 N N1A FAD . . . B 2 -22.789 51.536 -41.121 1 12.33 ? N1A FAD 399 A 1 
HETATM 20 C C2A FAD . . . B 2 -22.963 52.058 -39.815 1 13.15 ? C2A FAD 399 A 1 
HETATM 21 N N3A FAD . . . B 2 -21.857 52.808 -39.159 1 12.39 ? N3A FAD 399 A 1 
HETATM 22 C C4A FAD . . . B 2 -20.63 52.965 -39.927 1 9.46 ? C4A FAD 399 A 1 
HETATM 23 N N1 FAD . . . B 2 -4.987 51.559 -38.547 1 14.74 ? N1 FAD 399 A 1 
HETATM 24 C C2 FAD . . . B 2 -3.935 50.765 -39.105 1 17.18 ? C2 FAD 399 A 1 
HETATM 25 O O2 FAD . . . B 2 -4.046 50.371 -40.21 1 19.38 ? O2 FAD 399 A 1 
HETATM 26 N N3 FAD . . . B 2 -2.784 50.518 -38.222 1 15.66 ? N3 FAD 399 A 1 
HETATM 27 C C4 FAD . . . B 2 -2.591 51.001 -36.835 1 15.24 ? C4 FAD 399 A 1 
HETATM 28 O O4 FAD . . . B 2 -1.557 50.689 -36.269 1 17.02 ? O4 FAD 399 A 1 
HETATM 29 C C4X FAD . . . B 2 -3.682 51.819 -36.306 1 12.61 ? C4X FAD 399 A 1 
HETATM 30 N N5 FAD . . . B 2 -3.539 52.326 -35.015 1 13.53 ? N5 FAD 399 A 1 
HETATM 31 C C5X FAD . . . B 2 -4.589 53.171 -34.463 1 14.74 ? C5X FAD 399 A 1 
HETATM 32 C C6 FAD . . . B 2 -4.305 53.687 -33.086 1 14.85 ? C6 FAD 399 A 1 
HETATM 33 C C7 FAD . . . B 2 -5.285 54.592 -32.393 1 13.75 ? C7 FAD 399 A 1 
HETATM 34 C C7M FAD . . . B 2 -4.876 55.052 -31.022 1 15.19 ? C7M FAD 399 A 1 
HETATM 35 C C8 FAD . . . B 2 -6.573 54.961 -33.116 1 16.01 ? C8 FAD 399 A 1 
HETATM 36 C C8M FAD . . . B 2 -7.757 55.805 -32.781 1 13.77 ? C8M FAD 399 A 1 
HETATM 37 C C9 FAD . . . B 2 -6.867 54.452 -34.481 1 16.28 ? C9 FAD 399 A 1 
HETATM 38 C C9A FAD . . . B 2 -5.851 53.545 -35.168 1 17.55 ? C9A FAD 399 A 1 
HETATM 39 N N10 FAD . . . B 2 -6.012 52.951 -36.629 1 14.11 ? N10 FAD 399 A 1 
HETATM 40 C C10 FAD . . . B 2 -4.926 52.086 -37.244 1 12.31 ? C10 FAD 399 A 1 
HETATM 41 C C1' FAD . . . B 2 -7.247 53.341 -37.282 1 11.28 ? C1' FAD 399 A 1 
HETATM 42 C C2' FAD . . . B 2 -8.282 52.268 -37.172 1 15.55 ? C2' FAD 399 A 1 
HETATM 43 O O2' FAD . . . B 2 -8.01 51.003 -37.711 1 22.44 ? O2' FAD 399 A 1 
HETATM 44 C C3' FAD . . . B 2 -9.473 52.974 -37.943 1 17.19 ? C3' FAD 399 A 1 
HETATM 45 O O3' FAD . . . B 2 -10.035 54.05 -36.975 1 13.87 ? O3' FAD 399 A 1 
HETATM 46 C C4' FAD . . . B 2 -10.76 52.054 -38.036 1 13.4 ? C4' FAD 399 A 1 
HETATM 47 O O4' FAD . . . B 2 -10.532 50.854 -38.947 1 21.31 ? O4' FAD 399 A 1 
HETATM 48 C C5' FAD . . . B 2 -11.846 52.809 -38.793 1 16.58 ? C5' FAD 399 A 1 
HETATM 49 O O5' FAD . . . B 2 -12.453 53.988 -38.447 1 13.35 ? O5' FAD 399 A 1 
HETATM 50 P P FAD . . . B 2 -12.194 55.431 -39.002 1 14.04 ? P FAD 399 A 1 
HETATM 51 O O1P FAD . . . B 2 -11.313 56.167 -38.064 1 15.7 ? O1P FAD 399 A 1 
HETATM 52 O O2P FAD . . . B 2 -11.793 55.506 -40.409 1 17.19 ? O2P FAD 399 A 1 
HETATM 53 O O3P FAD . . . B 2 -13.644 55.989 -38.992 1 11.12 ? O3P FAD 399 A 1 
#
_model_server_stats.io_time_ms              60 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           379 
_model_server_stats.encode_time_ms          19 
_model_server_stats.element_count           53 
#