data_1SIR # _model_server_result.job_id fCNzhSgB7XKCJyVeaFeiMw _model_server_result.datetime_utc '2024-11-24 23:54:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1sir # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":400}' # _entry.id 1SIR # _exptl.entry_id 1SIR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 882.622 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-4-NITROBUTYRYL-COA _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1SIR _cell.length_a 116.722 _cell.length_b 116.722 _cell.length_c 128.034 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SIR _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 -58.361 101.084217 0 3 'crystal symmetry operation' 9_554 -x,-x+y,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -42.678 4 'crystal symmetry operation' 12_564 x,x-y+1,-z-1/3 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -58.361 101.084217 -42.678 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C25 H41 N8 O19 P3 S' _chem_comp.formula_weight 882.622 _chem_comp.id NBC _chem_comp.mon_nstd_flag . _chem_comp.name S-4-NITROBUTYRYL-COA _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P31 O33 NBC sing 328 n n P31 O34 NBC doub 329 n n P31 O23 NBC sing 330 n n P31 O32 NBC sing 331 n n O33 H28 NBC sing 332 n n O23 C19 NBC sing 333 n n C19 C18 NBC sing 334 n n C19 H29 NBC sing 335 n n C19 H30 NBC sing 336 n n C18 O22 NBC sing 337 n n C18 C17 NBC sing 338 n n C18 H36 NBC sing 339 n n O22 C15 NBC sing 340 n n C15 N9 NBC sing 341 n n C15 C16 NBC sing 342 n n C15 H37 NBC sing 343 n n N9 C4 NBC sing 344 n y N9 C8 NBC sing 345 n y C4 N3 NBC doub 346 n y C4 C5 NBC sing 347 n y N3 C2 NBC sing 348 n y C2 N1 NBC doub 349 n y C2 H39 NBC sing 350 n n N1 C6 NBC sing 351 n y C6 N6 NBC sing 352 n n C6 C5 NBC doub 353 n y N6 H40 NBC sing 354 n n N6 H41 NBC sing 355 n n C5 N7 NBC sing 356 n y N7 C8 NBC doub 357 n y C8 H38 NBC sing 358 n n C16 O20 NBC sing 359 n n C16 C17 NBC sing 360 n n C16 H34 NBC sing 361 n n O20 H35 NBC sing 362 n n C17 O21 NBC sing 363 n n C17 H31 NBC sing 364 n n O21 P39 NBC sing 365 n n P39 O40 NBC doub 366 n n P39 O41 NBC sing 367 n n P39 O42 NBC sing 368 n n O41 H33 NBC sing 369 n n O42 H32 NBC sing 370 n n O32 P35 NBC sing 371 n n P35 O36 NBC doub 372 n n P35 O37 NBC sing 373 n n P35 O38 NBC sing 374 n n O37 H27 NBC sing 375 n n O38 C46 NBC sing 376 n n C46 C45 NBC sing 377 n n C46 H25 NBC sing 378 n n C46 H26 NBC sing 379 n n C45 C53 NBC sing 380 n n C45 C57 NBC sing 381 n n C45 C44 NBC sing 382 n n C53 H22 NBC sing 383 n n C53 H23 NBC sing 384 n n C53 H24 NBC sing 385 n n C57 H19 NBC sing 386 n n C57 H20 NBC sing 387 n n C57 H21 NBC sing 388 n n C44 O52 NBC sing 389 n n C44 C43 NBC sing 390 n n C44 H18 NBC sing 391 n n O52 H17 NBC sing 392 n n C43 O51 NBC doub 393 n n C43 N68 NBC sing 394 n n N68 C62 NBC sing 395 n n N68 H16 NBC sing 396 n n C62 C61 NBC sing 397 n n C62 H14 NBC sing 398 n n C62 H15 NBC sing 399 n n C61 C69 NBC sing 400 n n C61 H12 NBC sing 401 n n C61 H13 NBC sing 402 n n C69 O72 NBC doub 403 n n C69 N71 NBC sing 404 n n N71 C74 NBC sing 405 n n N71 H11 NBC sing 406 n n C74 C73 NBC sing 407 n n C74 H91 NBC sing 408 n n C74 H10 NBC sing 409 n n C73 S81 NBC sing 410 n n C73 H71 NBC sing 411 n n C73 H81 NBC sing 412 n n S81 C1' NBC sing 413 n n C1' O1' NBC doub 414 n n C1' C2' NBC sing 415 n n C2' C3' NBC sing 416 n n C2' H51 NBC sing 417 n n C2' H61 NBC sing 418 n n C3' C4' NBC sing 419 n n C3' H31A NBC sing 420 n n C3' H41A NBC sing 421 n n C4' N5' NBC sing 422 n n C4' H11A NBC sing 423 n n C4' H21A NBC sing 424 n n N5' O2' NBC doub 425 n n N5' O3' NBC sing 426 n n # _atom_sites.entry_id 1SIR _atom_sites.fract_transf_matrix[1][1] 0.008567 _atom_sites.fract_transf_matrix[1][2] 0.004946 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009893 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00781 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 399 399 FAD FAD . C 3 NBC A 1 400 400 NBC NBC . D 4 HOH A 1 501 501 HOH HOH . D 4 HOH A 2 502 502 HOH HOH . D 4 HOH A 3 503 503 HOH HOH . D 4 HOH A 4 504 504 HOH HOH . D 4 HOH A 5 505 505 HOH HOH . D 4 HOH A 6 506 506 HOH HOH . D 4 HOH A 7 507 507 HOH HOH . D 4 HOH A 8 508 508 HOH HOH . D 4 HOH A 9 509 509 HOH HOH . D 4 HOH A 10 510 510 HOH HOH . D 4 HOH A 11 511 511 HOH HOH . D 4 HOH A 12 512 512 HOH HOH . D 4 HOH A 13 513 513 HOH HOH . D 4 HOH A 14 514 514 HOH HOH . D 4 HOH A 15 515 515 HOH HOH . D 4 HOH A 16 516 516 HOH HOH . D 4 HOH A 17 517 517 HOH HOH . D 4 HOH A 18 518 518 HOH HOH . D 4 HOH A 19 519 519 HOH HOH . D 4 HOH A 20 520 520 HOH HOH . D 4 HOH A 21 521 521 HOH HOH . D 4 HOH A 22 522 522 HOH HOH . D 4 HOH A 23 523 523 HOH HOH . D 4 HOH A 24 524 524 HOH HOH . D 4 HOH A 25 525 525 HOH HOH . D 4 HOH A 26 526 526 HOH HOH . D 4 HOH A 27 527 527 HOH HOH . D 4 HOH A 28 528 528 HOH HOH . D 4 HOH A 29 529 529 HOH HOH . D 4 HOH A 30 530 530 HOH HOH . D 4 HOH A 31 531 531 HOH HOH . D 4 HOH A 32 532 532 HOH HOH . D 4 HOH A 33 533 533 HOH HOH . D 4 HOH A 34 534 534 HOH HOH . D 4 HOH A 35 535 535 HOH HOH . D 4 HOH A 36 536 536 HOH HOH . D 4 HOH A 37 537 537 HOH HOH . D 4 HOH A 38 538 538 HOH HOH . D 4 HOH A 39 539 539 HOH HOH . D 4 HOH A 40 540 540 HOH HOH . D 4 HOH A 41 541 541 HOH HOH . D 4 HOH A 42 542 542 HOH HOH . D 4 HOH A 43 543 543 HOH HOH . D 4 HOH A 44 544 544 HOH HOH . D 4 HOH A 45 545 545 HOH HOH . D 4 HOH A 46 546 546 HOH HOH . D 4 HOH A 47 547 547 HOH HOH . D 4 HOH A 48 548 548 HOH HOH . D 4 HOH A 49 549 549 HOH HOH . D 4 HOH A 50 550 550 HOH HOH . D 4 HOH A 51 551 551 HOH HOH . D 4 HOH A 52 552 552 HOH HOH . D 4 HOH A 53 553 553 HOH HOH . D 4 HOH A 54 554 554 HOH HOH . D 4 HOH A 55 555 555 HOH HOH . D 4 HOH A 56 556 556 HOH HOH . D 4 HOH A 57 557 557 HOH HOH . D 4 HOH A 58 558 558 HOH HOH . D 4 HOH A 59 559 559 HOH HOH . D 4 HOH A 60 560 560 HOH HOH . D 4 HOH A 61 561 561 HOH HOH . D 4 HOH A 62 562 562 HOH HOH . D 4 HOH A 63 563 563 HOH HOH . D 4 HOH A 64 564 564 HOH HOH . D 4 HOH A 65 565 565 HOH HOH . D 4 HOH A 66 566 566 HOH HOH . D 4 HOH A 67 567 567 HOH HOH . D 4 HOH A 68 568 568 HOH HOH . D 4 HOH A 69 569 569 HOH HOH . D 4 HOH A 70 570 570 HOH HOH . D 4 HOH A 71 571 571 HOH HOH . D 4 HOH A 72 572 572 HOH HOH . D 4 HOH A 73 573 573 HOH HOH . D 4 HOH A 74 574 574 HOH HOH . D 4 HOH A 75 575 575 HOH HOH . D 4 HOH A 76 576 576 HOH HOH . D 4 HOH A 77 577 577 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P31 NBC . . . C 3 -15.505 40.92 -47.61 1 50.62 ? P31 NBC 400 A 1 HETATM 2 O O33 NBC . . . C 3 -16.852 40.35 -48.001 1 50.37 ? O33 NBC 400 A 1 HETATM 3 O O34 NBC . . . C 3 -15.105 40.743 -46.17 1 50.82 ? O34 NBC 400 A 1 HETATM 4 O O23 NBC . . . C 3 -14.355 40.287 -48.559 1 50.5 ? O23 NBC 400 A 1 HETATM 5 C C19 NBC . . . C 3 -12.937 40.557 -48.522 1 50.5 ? C19 NBC 400 A 1 HETATM 6 C C18 NBC . . . C 3 -12.017 39.264 -48.387 1 50.53 ? C18 NBC 400 A 1 HETATM 7 O O22 NBC . . . C 3 -11.627 39.296 -47.002 1 50.39 ? O22 NBC 400 A 1 HETATM 8 C C15 NBC . . . C 3 -11.969 38.053 -46.31 1 50.32 ? C15 NBC 400 A 1 HETATM 9 N N9 NBC . . . C 3 -12.283 38.267 -44.833 1 50.16 ? N9 NBC 400 A 1 HETATM 10 C C4 NBC . . . C 3 -11.452 37.771 -43.872 1 50.01 ? C4 NBC 400 A 1 HETATM 11 N N3 NBC . . . C 3 -10.21 37.01 -44.03 1 50 ? N3 NBC 400 A 1 HETATM 12 C C2 NBC . . . C 3 -9.504 36.599 -42.78 1 50.21 ? C2 NBC 400 A 1 HETATM 13 N N1 NBC . . . C 3 -10.04 36.956 -41.508 1 50.02 ? N1 NBC 400 A 1 HETATM 14 C C6 NBC . . . C 3 -11.339 37.755 -41.372 1 49.83 ? C6 NBC 400 A 1 HETATM 15 N N6 NBC . . . C 3 -11.773 38.051 -40.159 1 49.37 ? N6 NBC 400 A 1 HETATM 16 C C5 NBC . . . C 3 -12.087 38.19 -42.602 1 49.99 ? C5 NBC 400 A 1 HETATM 17 N N7 NBC . . . C 3 -13.242 38.89 -42.823 1 49.95 ? N7 NBC 400 A 1 HETATM 18 C C8 NBC . . . C 3 -13.338 38.926 -44.135 1 49.99 ? C8 NBC 400 A 1 HETATM 19 C C16 NBC . . . C 3 -13.117 37.473 -47.163 1 50.58 ? C16 NBC 400 A 1 HETATM 20 O O20 NBC . . . C 3 -13.34 36.049 -46.9 1 50.71 ? O20 NBC 400 A 1 HETATM 21 C C17 NBC . . . C 3 -12.678 37.867 -48.626 1 50.85 ? C17 NBC 400 A 1 HETATM 22 O O21 NBC . . . C 3 -11.623 36.944 -49.133 1 51.4 ? O21 NBC 400 A 1 HETATM 23 P P39 NBC . . . C 3 -10.976 36.101 -50.415 1 51.85 ? P39 NBC 400 A 1 HETATM 24 O O40 NBC . . . C 3 -12.065 35.133 -50.94 1 52.07 ? O40 NBC 400 A 1 HETATM 25 O O41 NBC . . . C 3 -10.564 37.151 -51.504 1 52.05 ? O41 NBC 400 A 1 HETATM 26 O O42 NBC . . . C 3 -9.747 35.371 -49.796 1 52.11 ? O42 NBC 400 A 1 HETATM 27 O O32 NBC . . . C 3 -15.44 42.566 -47.921 1 50.45 ? O32 NBC 400 A 1 HETATM 28 P P35 NBC . . . C 3 -16.706 43.594 -47.803 1 50.41 ? P35 NBC 400 A 1 HETATM 29 O O36 NBC . . . C 3 -17.046 44.061 -49.288 1 50.37 ? O36 NBC 400 A 1 HETATM 30 O O37 NBC . . . C 3 -18.036 42.956 -47.285 1 50.79 ? O37 NBC 400 A 1 HETATM 31 O O38 NBC . . . C 3 -16.503 44.99 -46.911 1 50.38 ? O38 NBC 400 A 1 HETATM 32 C C46 NBC . . . C 3 -16.477 44.938 -45.452 1 49.73 ? C46 NBC 400 A 1 HETATM 33 C C45 NBC . . . C 3 -15.125 44.974 -44.7 1 49.47 ? C45 NBC 400 A 1 HETATM 34 C C53 NBC . . . C 3 -14.115 44.175 -45.589 1 49.41 ? C53 NBC 400 A 1 HETATM 35 C C57 NBC . . . C 3 -14.752 46.409 -44.606 1 49.36 ? C57 NBC 400 A 1 HETATM 36 C C44 NBC . . . C 3 -15.221 44.352 -43.235 1 49.2 ? C44 NBC 400 A 1 HETATM 37 O O52 NBC . . . C 3 -15.603 42.949 -43.335 1 49.24 ? O52 NBC 400 A 1 HETATM 38 C C43 NBC . . . C 3 -13.829 44.36 -42.385 1 48.81 ? C43 NBC 400 A 1 HETATM 39 O O51 NBC . . . C 3 -13.344 43.266 -41.992 1 49.17 ? O51 NBC 400 A 1 HETATM 40 N N68 NBC . . . C 3 -13.131 45.518 -42.076 1 48.43 ? N68 NBC 400 A 1 HETATM 41 C C62 NBC . . . C 3 -13.699 46.509 -41.209 1 47.71 ? C62 NBC 400 A 1 HETATM 42 C C61 NBC . . . C 3 -12.641 47.529 -40.812 1 47.38 ? C61 NBC 400 A 1 HETATM 43 C C69 NBC . . . C 3 -11.234 46.901 -40.516 1 47.2 ? C69 NBC 400 A 1 HETATM 44 O O72 NBC . . . C 3 -11.117 45.636 -40.814 1 47.09 ? O72 NBC 400 A 1 HETATM 45 N N71 NBC . . . C 3 -10.199 47.828 -40.002 1 47.19 ? N71 NBC 400 A 1 HETATM 46 C C74 NBC . . . C 3 -8.877 47.397 -39.602 1 47.03 ? C74 NBC 400 A 1 HETATM 47 C C73 NBC . . . C 3 -8.045 48.279 -38.798 1 46.48 ? C73 NBC 400 A 1 HETATM 48 S S81 NBC . . . C 3 -6.288 48.103 -38.335 1 46.35 ? S81 NBC 400 A 1 HETATM 49 C C1' NBC . . . C 3 -5.91 48.572 -36.637 1 45.36 ? C1' NBC 400 A 1 HETATM 50 O O1' NBC . . . C 3 -6.928 48.956 -36.029 1 45.21 ? O1' NBC 400 A 1 HETATM 51 C C2' NBC . . . C 3 -4.532 48.497 -36.037 1 45.14 ? C2' NBC 400 A 1 HETATM 52 C C3' NBC . . . C 3 -4.509 48.541 -34.543 1 44.75 ? C3' NBC 400 A 1 HETATM 53 C C4' NBC . . . C 3 -3.617 47.687 -33.707 1 44.94 ? C4' NBC 400 A 1 HETATM 54 N N5' NBC . . . C 3 -3.378 48.021 -32.362 1 44.91 ? N5' NBC 400 A 1 HETATM 55 O O2' NBC . . . C 3 -3.656 47.098 -31.455 1 45.32 ? O2' NBC 400 A 1 HETATM 56 O O3' NBC . . . C 3 -2.9 49.149 -32.015 1 45.44 ? O3' NBC 400 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 56 #