data_1SIV # _model_server_result.job_id eFcja-r1lk8cKoFDHqVGCA _model_server_result.datetime_utc '2025-03-01 04:07:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1siv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":100}' # _entry.id 1SIV # _exptl.entry_id 1SIV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 577.713 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'methyl N-{(4S,5S)-5-[(L-alanyl-L-alanyl)amino]-4-hydroxy-6-phenylhexanoyl}-L-valyl-L-valinate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1SIV _cell.length_a 46.3 _cell.length_b 101.5 _cell.length_c 118.8 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SIV _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C29 H47 N5 O7' _chem_comp.formula_weight 577.713 _chem_comp.id PSI _chem_comp.mon_nstd_flag . _chem_comp.name 'methyl N-{(4S,5S)-5-[(L-alanyl-L-alanyl)amino]-4-hydroxy-6-phenylhexanoyl}-L-valyl-L-valinate' _chem_comp.type peptide-like _chem_comp.pdbx_synonyms 'SKF 107457' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA PSI sing 264 n n N H PSI sing 265 n n N H2 PSI sing 266 n n CA C PSI sing 267 n n CA CB PSI sing 268 n n CA HA PSI sing 269 n n C O PSI doub 270 n n CB HB1 PSI sing 271 n n CB HB2 PSI sing 272 n n CB HB3 PSI sing 273 n n N1 CA1 PSI sing 274 n n N1 H1 PSI sing 275 n n CA1 C1 PSI sing 276 n n CA1 CB1 PSI sing 277 n n CA1 HA1 PSI sing 278 n n C1 O1 PSI doub 279 n n CB1 HB11 PSI sing 280 n n CB1 HB21 PSI sing 281 n n CB1 HB31 PSI sing 282 n n N2 CA2 PSI sing 283 n n N2 H3 PSI sing 284 n n CA2 C2 PSI sing 285 n n CA2 CB2 PSI sing 286 n n CA2 HA2 PSI sing 287 n n C2 OS PSI sing 288 n n C2 CM PSI sing 289 n n C2 HC PSI sing 290 n n OS HOS PSI sing 291 n n CB2 CG PSI sing 292 n n CB2 HB12 PSI sing 293 n n CB2 HB22 PSI sing 294 n n CG CD1 PSI doub 295 n y CG CD2 PSI sing 296 n y CD1 CE1 PSI sing 297 n y CD1 HD1 PSI sing 298 n n CD2 CE2 PSI doub 299 n y CD2 HD2 PSI sing 300 n n CE1 CZ PSI doub 301 n y CE1 HE1 PSI sing 302 n n CE2 CZ PSI sing 303 n y CE2 HE2 PSI sing 304 n n CZ HZ PSI sing 305 n n CM HM2 PSI sing 306 n n CM HM3 PSI sing 307 n n CA3 C3 PSI sing 308 n n CA3 HA3 PSI sing 309 n n C3 O2 PSI doub 310 n n N4 CA4 PSI sing 311 n n N4 H5 PSI sing 312 n n CA4 C4 PSI sing 313 n n CA4 CB3 PSI sing 314 n n CA4 HA4 PSI sing 315 n n C4 O3 PSI doub 316 n n CB3 CG1 PSI sing 317 n n CB3 CG2 PSI sing 318 n n CB3 HB PSI sing 319 n n CG1 HG11 PSI sing 320 n n CG1 HG12 PSI sing 321 n n CG1 HG13 PSI sing 322 n n CG2 HG21 PSI sing 323 n n CG2 HG22 PSI sing 324 n n CG2 HG23 PSI sing 325 n n N5 CA5 PSI sing 326 n n N5 H6 PSI sing 327 n n CA5 C5 PSI sing 328 n n CA5 CB4 PSI sing 329 n n CA5 HA5 PSI sing 330 n n C5 O4 PSI doub 331 n n CB4 CG11 PSI sing 332 n n CB4 CG21 PSI sing 333 n n CB4 HB4 PSI sing 334 n n CG11 HG14 PSI sing 335 n n CG11 HG15 PSI sing 336 n n CG11 HG16 PSI sing 337 n n CG21 HG24 PSI sing 338 n n CG21 HG25 PSI sing 339 n n C6 O5 PSI sing 340 n n C6 H22 PSI sing 341 n n C6 H31 PSI sing 342 n n C N1 PSI sing 343 n n C1 N2 PSI sing 344 n n CM CA3 PSI sing 345 n n C3 N4 PSI sing 346 n n C4 N5 PSI sing 347 n n C5 O5 PSI sing 348 n n CA3 HA31 PSI sing 349 n n HG26 CG21 PSI sing 350 n n H7 C6 PSI sing 351 n n # _atom_sites.entry_id 1SIV _atom_sites.fract_transf_matrix[1][1] 0.021598 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009852 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008418 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PSI B 1 100 100 PSI GLI . D 3 HOH A 1 501 501 HOH HOH . D 3 HOH A 2 502 502 HOH HOH . D 3 HOH A 3 503 503 HOH HOH . D 3 HOH A 4 504 504 HOH HOH . D 3 HOH A 5 505 505 HOH HOH . D 3 HOH A 6 506 506 HOH HOH . D 3 HOH A 7 507 507 HOH HOH . D 3 HOH A 8 508 508 HOH HOH . D 3 HOH A 9 509 509 HOH HOH . D 3 HOH A 10 510 510 HOH HOH . D 3 HOH A 11 511 511 HOH HOH . D 3 HOH A 12 512 512 HOH HOH . D 3 HOH A 13 514 514 HOH HOH . D 3 HOH A 14 515 515 HOH HOH . D 3 HOH A 15 516 516 HOH HOH . D 3 HOH A 16 517 517 HOH HOH . D 3 HOH A 17 518 518 HOH HOH . D 3 HOH A 18 519 519 HOH HOH . D 3 HOH A 19 520 520 HOH HOH . D 3 HOH A 20 522 522 HOH HOH . D 3 HOH A 21 523 523 HOH HOH . D 3 HOH A 22 531 531 HOH HOH . E 3 HOH B 1 500 500 HOH HOH . E 3 HOH B 2 532 532 HOH HOH . E 3 HOH B 3 533 533 HOH HOH . E 3 HOH B 4 534 534 HOH HOH . E 3 HOH B 5 535 535 HOH HOH . E 3 HOH B 6 536 536 HOH HOH . E 3 HOH B 7 537 537 HOH HOH . E 3 HOH B 8 540 540 HOH HOH . E 3 HOH B 9 543 543 HOH HOH . E 3 HOH B 10 544 544 HOH HOH . E 3 HOH B 11 545 545 HOH HOH . E 3 HOH B 12 547 547 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N PSI . . . C 2 6.321 16.347 32.389 1 10.11 ? N PSI 100 B 1 HETATM 2 C CA PSI . . . C 2 6.178 15.157 33.219 1 10.15 ? CA PSI 100 B 1 HETATM 3 C C PSI . . . C 2 5.1 15.411 34.26 1 8.88 ? C PSI 100 B 1 HETATM 4 O O PSI . . . C 2 4.745 16.562 34.542 1 11.2 ? O PSI 100 B 1 HETATM 5 C CB PSI . . . C 2 7.468 14.826 33.945 1 9.92 ? CB PSI 100 B 1 HETATM 6 N N1 PSI . . . C 2 4.553 14.387 34.822 1 6.53 ? N1 PSI 100 B 1 HETATM 7 C CA1 PSI . . . C 2 3.522 14.546 35.801 1 5.09 ? CA1 PSI 100 B 1 HETATM 8 C C1 PSI . . . C 2 3.76 13.525 36.914 1 7.01 ? C1 PSI 100 B 1 HETATM 9 O O1 PSI . . . C 2 3.546 12.322 36.761 1 7.28 ? O1 PSI 100 B 1 HETATM 10 C CB1 PSI . . . C 2 2.205 14.311 35.105 1 2.01 ? CB1 PSI 100 B 1 HETATM 11 C C3 PSI . . . C 2 1.527 11 41.451 1 9 ? C3 PSI 100 B 1 HETATM 12 O O2 PSI . . . C 2 1.845 10.122 40.635 1 6.41 ? O2 PSI 100 B 1 HETATM 13 C CA3 PSI . . . C 2 1.117 12.378 40.951 1 5.71 ? CA3 PSI 100 B 1 HETATM 14 C CM PSI . . . C 2 1.969 12.755 39.784 1 7.09 ? CM PSI 100 B 1 HETATM 15 C C2 PSI . . . C 2 3.343 13.125 40.233 1 6.69 ? C2 PSI 100 B 1 HETATM 16 O OS PSI . . . C 2 3.227 14.46 40.705 1 8.34 ? OS PSI 100 B 1 HETATM 17 C CA2 PSI . . . C 2 4.452 13.011 39.177 1 7.11 ? CA2 PSI 100 B 1 HETATM 18 N N2 PSI . . . C 2 4.215 13.948 38.082 1 6.32 ? N2 PSI 100 B 1 HETATM 19 C CB2 PSI . . . C 2 5.822 13.315 39.752 1 6.72 ? CB2 PSI 100 B 1 HETATM 20 C CG PSI . . . C 2 6.911 13.067 38.732 1 8.43 ? CG PSI 100 B 1 HETATM 21 C CD1 PSI . . . C 2 7.268 11.774 38.425 1 7.28 ? CD1 PSI 100 B 1 HETATM 22 C CD2 PSI . . . C 2 7.542 14.143 38.131 1 7.25 ? CD2 PSI 100 B 1 HETATM 23 C CE1 PSI . . . C 2 8.269 11.582 37.501 1 9.98 ? CE1 PSI 100 B 1 HETATM 24 C CE2 PSI . . . C 2 8.541 13.949 37.21 1 7.37 ? CE2 PSI 100 B 1 HETATM 25 C CZ PSI . . . C 2 8.899 12.661 36.898 1 9.24 ? CZ PSI 100 B 1 HETATM 26 N N4 PSI . . . C 2 1.524 10.78 42.758 1 5.48 ? N4 PSI 100 B 1 HETATM 27 C CA4 PSI . . . C 2 1.882 9.476 43.227 1 6.71 ? CA4 PSI 100 B 1 HETATM 28 C C4 PSI . . . C 2 0.831 9.202 44.272 1 8.17 ? C4 PSI 100 B 1 HETATM 29 O O3 PSI . . . C 2 0.594 9.973 45.206 1 8.26 ? O3 PSI 100 B 1 HETATM 30 C CB3 PSI . . . C 2 3.272 9.343 43.919 1 7.58 ? CB3 PSI 100 B 1 HETATM 31 C CG1 PSI . . . C 2 3.512 7.866 44.202 1 4.58 ? CG1 PSI 100 B 1 HETATM 32 C CG2 PSI . . . C 2 4.425 9.805 43.038 1 8.41 ? CG2 PSI 100 B 1 HETATM 33 N N5 PSI . . . C 2 0.187 8.063 44.137 1 9.29 ? N5 PSI 100 B 1 HETATM 34 C CA5 PSI . . . C 2 -0.835 7.623 45.077 1 9.3 ? CA5 PSI 100 B 1 HETATM 35 C C5 PSI . . . C 2 -0.358 6.263 45.627 1 9.2 ? C5 PSI 100 B 1 HETATM 36 O O4 PSI . . . C 2 0.661 5.687 45.229 1 8.61 ? O4 PSI 100 B 1 HETATM 37 C CB4 PSI . . . C 2 -2.213 7.472 44.394 1 8.07 ? CB4 PSI 100 B 1 HETATM 38 C CG11 PSI . . . C 2 -2.156 6.412 43.315 1 8.89 ? CG11 PSI 100 B 1 HETATM 39 C CG21 PSI . . . C 2 -2.652 8.832 43.888 1 6.29 ? CG21 PSI 100 B 1 HETATM 40 C C6 PSI . . . C 2 -0.146 5.01 47.645 1 14.7 ? C6 PSI 100 B 1 HETATM 41 O O5 PSI . . . C 2 -1.036 5.602 46.676 1 13.08 ? O5 PSI 100 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 41 #