data_1SIZ # _model_server_result.job_id L3Zii5FTVB40ZRjvF8LQ1Q _model_server_result.datetime_utc '2024-10-18 14:26:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1siz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":71}' # _entry.id 1SIZ # _exptl.entry_id 1SIZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 295.795 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE3-S4 CLUSTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1SIZ _cell.length_a 47.447 _cell.length_b 51.637 _cell.length_c 54.549 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SIZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 21 A CYS 21 1_555 A SG CYS 48 A CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 B SG CYS 21 C CYS 21 1_555 B SG CYS 48 C CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc1 A SG CYS 11 A CYS 11 1_555 E FE1 F3S . A F3S 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc2 A SG CYS 17 A CYS 17 1_555 E FE3 F3S . A F3S 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc3 A SG CYS 56 A CYS 56 1_555 E FE4 F3S . A F3S 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc4 D CO 3CO . A 3CO 74 1_555 I O HOH . A HOH 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc5 B SG CYS 11 C CYS 11 1_555 H FE1 F3S . C F3S 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? metalc ? metalc6 B SG CYS 17 C CYS 17 1_555 H FE3 F3S . C F3S 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc7 B SG CYS 56 C CYS 56 1_555 H FE4 F3S . C F3S 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc8 G CO 3CO . C 3CO 75 1_555 J O HOH . C HOH 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? # _chem_comp.formula 'Fe3 S4' _chem_comp.formula_weight 295.795 _chem_comp.id F3S _chem_comp.mon_nstd_flag . _chem_comp.name 'FE3-S4 CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S1 F3S sing 57 n n FE1 S2 F3S sing 58 n n FE1 S3 F3S sing 59 n n FE3 S1 F3S sing 60 n n FE3 S3 F3S sing 61 n n FE3 S4 F3S sing 62 n n FE4 S2 F3S sing 63 n n FE4 S3 F3S sing 64 n n FE4 S4 F3S sing 65 n n # _atom_sites.entry_id 1SIZ _atom_sites.fract_transf_matrix[1][1] 0.021076 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019366 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018332 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 3CO A 1 72 72 3CO 3CO . D 2 3CO A 1 74 74 3CO 3CO . E 3 F3S A 1 70 70 F3S F3S . F 2 3CO C 1 73 73 3CO 3CO . G 2 3CO C 1 75 75 3CO 3CO . H 3 F3S C 1 71 71 F3S F3S . I 4 HOH A 1 75 1 HOH HOH . I 4 HOH A 2 76 3 HOH HOH . I 4 HOH A 3 77 4 HOH HOH . I 4 HOH A 4 78 9 HOH HOH . I 4 HOH A 5 79 10 HOH HOH . I 4 HOH A 6 80 11 HOH HOH . I 4 HOH A 7 81 12 HOH HOH . I 4 HOH A 8 82 16 HOH HOH . I 4 HOH A 9 83 18 HOH HOH . I 4 HOH A 10 84 19 HOH HOH . I 4 HOH A 11 85 20 HOH HOH . I 4 HOH A 12 86 21 HOH HOH . I 4 HOH A 13 87 22 HOH HOH . I 4 HOH A 14 88 23 HOH HOH . I 4 HOH A 15 89 24 HOH HOH . I 4 HOH A 16 90 25 HOH HOH . I 4 HOH A 17 91 27 HOH HOH . I 4 HOH A 18 92 28 HOH HOH . I 4 HOH A 19 93 30 HOH HOH . I 4 HOH A 20 94 31 HOH HOH . I 4 HOH A 21 95 32 HOH HOH . I 4 HOH A 22 96 34 HOH HOH . I 4 HOH A 23 97 36 HOH HOH . I 4 HOH A 24 98 37 HOH HOH . I 4 HOH A 25 99 41 HOH HOH . I 4 HOH A 26 100 43 HOH HOH . I 4 HOH A 27 101 45 HOH HOH . I 4 HOH A 28 102 47 HOH HOH . I 4 HOH A 29 103 48 HOH HOH . I 4 HOH A 30 104 49 HOH HOH . I 4 HOH A 31 105 50 HOH HOH . J 4 HOH C 1 76 2 HOH HOH . J 4 HOH C 2 77 6 HOH HOH . J 4 HOH C 3 78 13 HOH HOH . J 4 HOH C 4 79 15 HOH HOH . J 4 HOH C 5 80 17 HOH HOH . J 4 HOH C 6 81 26 HOH HOH . J 4 HOH C 7 82 29 HOH HOH . J 4 HOH C 8 83 33 HOH HOH . J 4 HOH C 9 84 35 HOH HOH . J 4 HOH C 10 85 38 HOH HOH . J 4 HOH C 11 86 39 HOH HOH . J 4 HOH C 12 87 40 HOH HOH . J 4 HOH C 13 88 42 HOH HOH . J 4 HOH C 14 89 44 HOH HOH . J 4 HOH C 15 90 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 F3S . . . H 3 49.565 47.458 30.144 1 26.86 ? FE1 F3S 71 C 1 HETATM 2 FE FE3 F3S . . . H 3 49.808 48.568 27.653 1 27.98 ? FE3 F3S 71 C 1 HETATM 3 FE FE4 F3S . . . H 3 48.496 46.162 27.982 1 30.88 ? FE4 F3S 71 C 1 HETATM 4 S S1 F3S . . . H 3 51.297 48.589 29.381 1 34.13 ? S1 F3S 71 C 1 HETATM 5 S S2 F3S . . . H 3 49.844 45.227 29.598 1 26.8 ? S2 F3S 71 C 1 HETATM 6 S S3 F3S . . . H 3 47.81 48.173 28.805 1 29.14 ? S3 F3S 71 C 1 HETATM 7 S S4 F3S . . . H 3 49.996 46.699 26.462 1 30.92 ? S4 F3S 71 C 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 7 #