data_1SJW # _model_server_result.job_id JhQKXKbgxyZYBYRG-9z5hA _model_server_result.datetime_utc '2024-10-11 16:26:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1sjw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":333}' # _entry.id 1SJW # _exptl.entry_id 1SJW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 378.332 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'METHYL 5,7-DIHYDROXY-2-METHYL-4,6,11-TRIOXO-3,4,6,11-TETRAHYDROTETRACENE-1-CARBOXYLATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1SJW _cell.length_a 69.1 _cell.length_b 72 _cell.length_c 65.4 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SJW _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS tetrameric 4 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1,2,3,4 A,B,C 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H14 O7' _chem_comp.formula_weight 378.332 _chem_comp.id NGV _chem_comp.mon_nstd_flag . _chem_comp.name 'METHYL 5,7-DIHYDROXY-2-METHYL-4,6,11-TRIOXO-3,4,6,11-TETRAHYDROTETRACENE-1-CARBOXYLATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms NOGALAVIKETONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O17 C14 NGV doub 224 n n C14 O16 NGV sing 225 n n C14 C10 NGV sing 226 n n O16 C15 NGV sing 227 n n C15 H151 NGV sing 228 n n C15 H152 NGV sing 229 n n C15 H153 NGV sing 230 n n C10 C9 NGV doub 231 n n C10 C19 NGV sing 232 n n C9 C13 NGV sing 233 n n C9 C8 NGV sing 234 n n C13 H131 NGV sing 235 n n C13 H132 NGV sing 236 n n C13 H133 NGV sing 237 n n C8 C7 NGV sing 238 n n C8 H81 NGV sing 239 n n C8 H82 NGV sing 240 n n C19 C20 NGV doub 241 n y C19 C11 NGV sing 242 n y C20 C7 NGV sing 243 n n C20 C6 NGV sing 244 n y C7 O22 NGV doub 245 n n C11 C18 NGV doub 246 n y C11 H11 NGV sing 247 n n C18 C17 NGV sing 248 n y C18 C12 NGV sing 249 n n C17 C5 NGV sing 250 n n C17 C6 NGV doub 251 n y C5 O20 NGV doub 252 n n C5 C16 NGV sing 253 n n C6 O21 NGV sing 254 n n O21 H21 NGV sing 255 n n C12 O18 NGV doub 256 n n C12 C21 NGV sing 257 n n C21 C1 NGV doub 258 n y C21 C16 NGV sing 259 n y C1 C2 NGV sing 260 n y C1 H1 NGV sing 261 n n C2 C3 NGV doub 262 n y C2 H2 NGV sing 263 n n C3 C4 NGV sing 264 n y C3 H3 NGV sing 265 n n C16 C4 NGV doub 266 n y C4 O19 NGV sing 267 n n O19 H19 NGV sing 268 n n # _atom_sites.entry_id 1SJW _atom_sites.fract_transf_matrix[1][1] 0.014472 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013893 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015285 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NGV A 1 333 333 NGV NGV . C 3 HOH A 1 334 1 HOH HOH . C 3 HOH A 2 335 2 HOH HOH . C 3 HOH A 3 336 3 HOH HOH . C 3 HOH A 4 337 4 HOH HOH . C 3 HOH A 5 338 5 HOH HOH . C 3 HOH A 6 339 6 HOH HOH . C 3 HOH A 7 340 7 HOH HOH . C 3 HOH A 8 341 8 HOH HOH . C 3 HOH A 9 342 9 HOH HOH . C 3 HOH A 10 343 10 HOH HOH . C 3 HOH A 11 344 11 HOH HOH . C 3 HOH A 12 345 12 HOH HOH . C 3 HOH A 13 346 14 HOH HOH . C 3 HOH A 14 347 15 HOH HOH . C 3 HOH A 15 348 16 HOH HOH . C 3 HOH A 16 349 17 HOH HOH . C 3 HOH A 17 350 18 HOH HOH . C 3 HOH A 18 351 19 HOH HOH . C 3 HOH A 19 352 20 HOH HOH . C 3 HOH A 20 353 21 HOH HOH . C 3 HOH A 21 354 22 HOH HOH . C 3 HOH A 22 355 23 HOH HOH . C 3 HOH A 23 356 24 HOH HOH . C 3 HOH A 24 357 25 HOH HOH . C 3 HOH A 25 358 26 HOH HOH . C 3 HOH A 26 359 27 HOH HOH . C 3 HOH A 27 360 28 HOH HOH . C 3 HOH A 28 361 29 HOH HOH . C 3 HOH A 29 362 30 HOH HOH . C 3 HOH A 30 363 31 HOH HOH . C 3 HOH A 31 364 32 HOH HOH . C 3 HOH A 32 365 33 HOH HOH . C 3 HOH A 33 366 34 HOH HOH . C 3 HOH A 34 367 35 HOH HOH . C 3 HOH A 35 368 36 HOH HOH . C 3 HOH A 36 369 37 HOH HOH . C 3 HOH A 37 370 38 HOH HOH . C 3 HOH A 38 371 39 HOH HOH . C 3 HOH A 39 372 40 HOH HOH . C 3 HOH A 40 373 41 HOH HOH . C 3 HOH A 41 374 42 HOH HOH . C 3 HOH A 42 375 43 HOH HOH . C 3 HOH A 43 376 44 HOH HOH . C 3 HOH A 44 377 45 HOH HOH . C 3 HOH A 45 378 46 HOH HOH . C 3 HOH A 46 379 47 HOH HOH . C 3 HOH A 47 380 48 HOH HOH . C 3 HOH A 48 381 49 HOH HOH . C 3 HOH A 49 382 50 HOH HOH . C 3 HOH A 50 383 51 HOH HOH . C 3 HOH A 51 384 52 HOH HOH . C 3 HOH A 52 385 53 HOH HOH . C 3 HOH A 53 386 54 HOH HOH . C 3 HOH A 54 387 55 HOH HOH . C 3 HOH A 55 388 56 HOH HOH . C 3 HOH A 56 389 57 HOH HOH . C 3 HOH A 57 390 58 HOH HOH . C 3 HOH A 58 391 59 HOH HOH . C 3 HOH A 59 392 60 HOH HOH . C 3 HOH A 60 393 61 HOH HOH . C 3 HOH A 61 394 62 HOH HOH . C 3 HOH A 62 395 63 HOH HOH . C 3 HOH A 63 396 64 HOH HOH . C 3 HOH A 64 397 65 HOH HOH . C 3 HOH A 65 398 66 HOH HOH . C 3 HOH A 66 399 67 HOH HOH . C 3 HOH A 67 400 68 HOH HOH . C 3 HOH A 68 401 69 HOH HOH . C 3 HOH A 69 402 70 HOH HOH . C 3 HOH A 70 403 71 HOH HOH . C 3 HOH A 71 404 72 HOH HOH . C 3 HOH A 72 405 73 HOH HOH . C 3 HOH A 73 406 74 HOH HOH . C 3 HOH A 74 407 75 HOH HOH . C 3 HOH A 75 408 76 HOH HOH . C 3 HOH A 76 409 77 HOH HOH . C 3 HOH A 77 410 78 HOH HOH . C 3 HOH A 78 411 79 HOH HOH . C 3 HOH A 79 412 80 HOH HOH . C 3 HOH A 80 413 81 HOH HOH . C 3 HOH A 81 414 82 HOH HOH . C 3 HOH A 82 415 83 HOH HOH . C 3 HOH A 83 416 84 HOH HOH . C 3 HOH A 84 417 85 HOH HOH . C 3 HOH A 85 418 86 HOH HOH . C 3 HOH A 86 419 87 HOH HOH . C 3 HOH A 87 420 88 HOH HOH . C 3 HOH A 88 421 89 HOH HOH . C 3 HOH A 89 422 90 HOH HOH . C 3 HOH A 90 423 91 HOH HOH . C 3 HOH A 91 424 92 HOH HOH . C 3 HOH A 92 425 93 HOH HOH . C 3 HOH A 93 426 94 HOH HOH . C 3 HOH A 94 427 95 HOH HOH . C 3 HOH A 95 428 96 HOH HOH . C 3 HOH A 96 429 97 HOH HOH . C 3 HOH A 97 430 98 HOH HOH . C 3 HOH A 98 431 99 HOH HOH . C 3 HOH A 99 432 101 HOH HOH . C 3 HOH A 100 433 102 HOH HOH . C 3 HOH A 101 434 103 HOH HOH . C 3 HOH A 102 435 104 HOH HOH . C 3 HOH A 103 436 105 HOH HOH . C 3 HOH A 104 437 106 HOH HOH . C 3 HOH A 105 438 107 HOH HOH . C 3 HOH A 106 439 108 HOH HOH . C 3 HOH A 107 440 109 HOH HOH . C 3 HOH A 108 441 110 HOH HOH . C 3 HOH A 109 442 111 HOH HOH . C 3 HOH A 110 443 112 HOH HOH . C 3 HOH A 111 444 113 HOH HOH . C 3 HOH A 112 445 114 HOH HOH . C 3 HOH A 113 446 115 HOH HOH . C 3 HOH A 114 447 116 HOH HOH . C 3 HOH A 115 448 117 HOH HOH . C 3 HOH A 116 449 118 HOH HOH . C 3 HOH A 117 450 119 HOH HOH . C 3 HOH A 118 451 120 HOH HOH . C 3 HOH A 119 452 121 HOH HOH . C 3 HOH A 120 453 123 HOH HOH . C 3 HOH A 121 454 124 HOH HOH . C 3 HOH A 122 455 126 HOH HOH . C 3 HOH A 123 456 127 HOH HOH . C 3 HOH A 124 457 128 HOH HOH . C 3 HOH A 125 458 129 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O17 NGV . . . B 2 9.571 1.669 12.463 1 27.27 ? O17 NGV 333 A 1 HETATM 2 C C14 NGV . . . B 2 9.697 2.082 13.6 1 24.33 ? C14 NGV 333 A 1 HETATM 3 O O16 NGV . . . B 2 10.793 2.988 13.856 1 26.44 ? O16 NGV 333 A 1 HETATM 4 C C15 NGV . . . B 2 11.61 3.53 12.816 1 26.13 ? C15 NGV 333 A 1 HETATM 5 C C10 NGV . . . B 2 8.896 1.606 14.777 1 22.33 ? C10 NGV 333 A 1 HETATM 6 C C9 NGV . . . B 2 8.884 2.36 15.956 1 24.19 ? C9 NGV 333 A 1 HETATM 7 C C13 NGV . . . B 2 9.584 3.688 16.112 1 24.59 ? C13 NGV 333 A 1 HETATM 8 C C8 NGV . . . B 2 8.188 1.896 17.067 1 25.01 ? C8 NGV 333 A 1 HETATM 9 C C19 NGV . . . B 2 8.229 0.366 14.75 1 20.87 ? C19 NGV 333 A 1 HETATM 10 C C20 NGV . . . B 2 7.521 -0.062 15.875 1 22.59 ? C20 NGV 333 A 1 HETATM 11 C C7 NGV . . . B 2 7.516 0.687 17.048 1 24.1 ? C7 NGV 333 A 1 HETATM 12 O O22 NGV . . . B 2 6.895 0.32 18.089 1 25.95 ? O22 NGV 333 A 1 HETATM 13 C C11 NGV . . . B 2 8.19 -0.447 13.597 1 20.77 ? C11 NGV 333 A 1 HETATM 14 C C18 NGV . . . B 2 7.478 -1.656 13.567 1 20.22 ? C18 NGV 333 A 1 HETATM 15 C C17 NGV . . . B 2 6.789 -2.127 14.685 1 21.4 ? C17 NGV 333 A 1 HETATM 16 C C5 NGV . . . B 2 6.115 -3.357 14.632 1 21.73 ? C5 NGV 333 A 1 HETATM 17 O O20 NGV . . . B 2 5.503 -3.764 15.658 1 23.05 ? O20 NGV 333 A 1 HETATM 18 C C6 NGV . . . B 2 6.807 -1.355 15.844 1 22.18 ? C6 NGV 333 A 1 HETATM 19 O O21 NGV . . . B 2 6.171 -1.717 16.957 1 24 ? O21 NGV 333 A 1 HETATM 20 C C12 NGV . . . B 2 7.462 -2.409 12.395 1 19.83 ? C12 NGV 333 A 1 HETATM 21 O O18 NGV . . . B 2 8.123 -1.944 11.344 1 21.79 ? O18 NGV 333 A 1 HETATM 22 C C21 NGV . . . B 2 6.775 -3.617 12.329 1 19.22 ? C21 NGV 333 A 1 HETATM 23 C C1 NGV . . . B 2 6.762 -4.361 11.157 1 20.88 ? C1 NGV 333 A 1 HETATM 24 C C2 NGV . . . B 2 6.067 -5.56 11.112 1 20.79 ? C2 NGV 333 A 1 HETATM 25 C C3 NGV . . . B 2 5.389 -6.061 12.206 1 20.85 ? C3 NGV 333 A 1 HETATM 26 C C16 NGV . . . B 2 6.084 -4.102 13.445 1 19.83 ? C16 NGV 333 A 1 HETATM 27 C C4 NGV . . . B 2 5.389 -5.312 13.374 1 21.06 ? C4 NGV 333 A 1 HETATM 28 O O19 NGV . . . B 2 4.727 -5.775 14.423 1 24.08 ? O19 NGV 333 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #