data_1SKJ # _model_server_result.job_id GplJ-YpxC7w51tm_MxgQhw _model_server_result.datetime_utc '2025-01-03 03:51:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1skj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":113}' # _entry.id 1SKJ # _exptl.entry_id 1SKJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 571.557 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-[3-CARBOXYMETHYL-3-(4-PHOSPHONOOXY-BENZYL)-UREIDO]-4-[(3-CYCLOHEXYL-PROPYL)-METHYL-CARBAMOYL]BUTYRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1SKJ _cell.length_a 74.4 _cell.length_b 74.4 _cell.length_c 38.8 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SKJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C25 H38 N3 O10 P' _chem_comp.formula_weight 571.557 _chem_comp.id UR2 _chem_comp.mon_nstd_flag . _chem_comp.name '4-[3-CARBOXYMETHYL-3-(4-PHOSPHONOOXY-BENZYL)-UREIDO]-4-[(3-CYCLOHEXYL-PROPYL)-METHYL-CARBAMOYL]BUTYRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 UR2 doub 339 n y C1 C6 UR2 sing 340 n y C1 O4P UR2 sing 341 n n C10 C9 UR2 sing 342 n n C10 O11 UR2 sing 343 n n C10 O12 UR2 doub 344 n n C13 N15 UR2 sing 345 n n C13 N8 UR2 sing 346 n n C13 O14 UR2 doub 347 n n C16 C17 UR2 sing 348 n n C16 C22 UR2 sing 349 n n C16 N15 UR2 sing 350 n n C16 H16 UR2 sing 351 n n C17 C18 UR2 sing 352 n n C17 H171 UR2 sing 353 n n C17 H172 UR2 sing 354 n n C18 C19 UR2 sing 355 n n C18 H181 UR2 sing 356 n n C18 H182 UR2 sing 357 n n C19 O20 UR2 doub 358 n n C19 O21 UR2 sing 359 n n C2 C3 UR2 sing 360 n y C2 H2 UR2 sing 361 n n C22 N24 UR2 sing 362 n n C22 O23 UR2 doub 363 n n C25 N24 UR2 sing 364 n n C25 H251 UR2 sing 365 n n C25 H252 UR2 sing 366 n n C25 H253 UR2 sing 367 n n C26 C27 UR2 sing 368 n n C26 N24 UR2 sing 369 n n C26 H261 UR2 sing 370 n n C26 H262 UR2 sing 371 n n C27 C28 UR2 sing 372 n n C27 H271 UR2 sing 373 n n C27 H272 UR2 sing 374 n n C28 C29 UR2 sing 375 n n C28 H281 UR2 sing 376 n n C28 H282 UR2 sing 377 n n C29 C30 UR2 sing 378 n n C29 C34 UR2 sing 379 n n C29 H29 UR2 sing 380 n n C3 C4 UR2 doub 381 n y C3 H3 UR2 sing 382 n n C30 C31 UR2 sing 383 n n C30 H301 UR2 sing 384 n n C30 H302 UR2 sing 385 n n C31 C32 UR2 sing 386 n n C31 H311 UR2 sing 387 n n C31 H312 UR2 sing 388 n n C32 C33 UR2 sing 389 n n C32 H321 UR2 sing 390 n n C32 H322 UR2 sing 391 n n C33 C34 UR2 sing 392 n n C33 H331 UR2 sing 393 n n C33 H332 UR2 sing 394 n n C34 H341 UR2 sing 395 n n C34 H342 UR2 sing 396 n n C4 C5 UR2 sing 397 n y C4 C7 UR2 sing 398 n n C5 C6 UR2 doub 399 n y C5 H5 UR2 sing 400 n n C6 H6 UR2 sing 401 n n C7 N8 UR2 sing 402 n n C7 H71 UR2 sing 403 n n C7 H72 UR2 sing 404 n n C9 N8 UR2 sing 405 n n C9 H91 UR2 sing 406 n n C9 H92 UR2 sing 407 n n N15 HN5 UR2 sing 408 n n O11 HO1 UR2 sing 409 n n O1P P UR2 doub 410 n n O21 HO2 UR2 sing 411 n n O2P P UR2 sing 412 n n O2P HOP2 UR2 sing 413 n n O3P P UR2 sing 414 n n O3P HOP3 UR2 sing 415 n n O4P P UR2 sing 416 n n # _atom_sites.entry_id 1SKJ _atom_sites.fract_transf_matrix[1][1] 0.013441 _atom_sites.fract_transf_matrix[1][2] 0.00776 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01552 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025773 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UR2 A 1 113 1 UR2 UR2 . C 3 HOH A 1 114 1 HOH HOH . C 3 HOH A 2 115 2 HOH HOH . C 3 HOH A 3 116 3 HOH HOH . C 3 HOH A 4 117 4 HOH HOH . C 3 HOH A 5 118 5 HOH HOH . C 3 HOH A 6 119 7 HOH HOH . C 3 HOH A 7 120 9 HOH HOH . C 3 HOH A 8 121 10 HOH HOH . C 3 HOH A 9 122 11 HOH HOH . C 3 HOH A 10 123 12 HOH HOH . C 3 HOH A 11 124 13 HOH HOH . C 3 HOH A 12 125 16 HOH HOH . C 3 HOH A 13 126 19 HOH HOH . C 3 HOH A 14 127 21 HOH HOH . C 3 HOH A 15 128 22 HOH HOH . C 3 HOH A 16 129 23 HOH HOH . C 3 HOH A 17 130 24 HOH HOH . C 3 HOH A 18 131 25 HOH HOH . C 3 HOH A 19 132 26 HOH HOH . C 3 HOH A 20 133 27 HOH HOH . C 3 HOH A 21 134 28 HOH HOH . C 3 HOH A 22 135 30 HOH HOH . C 3 HOH A 23 136 31 HOH HOH . C 3 HOH A 24 137 32 HOH HOH . C 3 HOH A 25 138 33 HOH HOH . C 3 HOH A 26 139 36 HOH HOH . C 3 HOH A 27 140 37 HOH HOH . C 3 HOH A 28 141 38 HOH HOH . C 3 HOH A 29 142 39 HOH HOH . C 3 HOH A 30 143 40 HOH HOH . C 3 HOH A 31 144 41 HOH HOH . C 3 HOH A 32 145 42 HOH HOH . C 3 HOH A 33 146 44 HOH HOH . C 3 HOH A 34 147 45 HOH HOH . C 3 HOH A 35 148 48 HOH HOH . C 3 HOH A 36 149 49 HOH HOH . C 3 HOH A 37 150 51 HOH HOH . C 3 HOH A 38 151 52 HOH HOH . C 3 HOH A 39 152 53 HOH HOH . C 3 HOH A 40 153 55 HOH HOH . C 3 HOH A 41 154 60 HOH HOH . C 3 HOH A 42 155 63 HOH HOH . C 3 HOH A 43 156 65 HOH HOH . C 3 HOH A 44 157 67 HOH HOH . C 3 HOH A 45 158 68 HOH HOH . C 3 HOH A 46 159 69 HOH HOH . C 3 HOH A 47 160 71 HOH HOH . C 3 HOH A 48 161 74 HOH HOH . C 3 HOH A 49 162 77 HOH HOH . C 3 HOH A 50 163 80 HOH HOH . C 3 HOH A 51 164 85 HOH HOH . C 3 HOH A 52 165 88 HOH HOH . C 3 HOH A 53 166 89 HOH HOH . C 3 HOH A 54 167 93 HOH HOH . C 3 HOH A 55 168 94 HOH HOH . C 3 HOH A 56 169 96 HOH HOH . C 3 HOH A 57 170 97 HOH HOH . C 3 HOH A 58 171 98 HOH HOH . C 3 HOH A 59 172 106 HOH HOH . C 3 HOH A 60 173 116 HOH HOH . C 3 HOH A 61 174 117 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 UR2 . . . B 2 -11.085 64.116 -7.65 1 8.17 ? C1 UR2 113 A 1 HETATM 2 C C10 UR2 . . . B 2 -6.47 65.765 -11.778 1 26.42 ? C10 UR2 113 A 1 HETATM 3 C C13 UR2 . . . B 2 -5.58 63.039 -9.893 1 13.28 ? C13 UR2 113 A 1 HETATM 4 C C16 UR2 . . . B 2 -4.171 61.378 -8.782 1 9.87 ? C16 UR2 113 A 1 HETATM 5 C C17 UR2 . . . B 2 -3.522 61.298 -7.378 1 9.63 ? C17 UR2 113 A 1 HETATM 6 C C18 UR2 . . . B 2 -2.838 62.578 -6.88 1 11.1 ? C18 UR2 113 A 1 HETATM 7 C C19 UR2 . . . B 2 -1.884 63.186 -7.894 1 14.84 ? C19 UR2 113 A 1 HETATM 8 C C2 UR2 . . . B 2 -10.247 63.019 -7.809 1 10.69 ? C2 UR2 113 A 1 HETATM 9 C C22 UR2 . . . B 2 -4.863 60.006 -9.078 1 8.98 ? C22 UR2 113 A 1 HETATM 10 C C25 UR2 . . . B 2 -4.92 57.66 -9.576 1 3.73 ? C25 UR2 113 A 1 HETATM 11 C C26 UR2 . . . B 2 -2.861 59.006 -10.227 1 8.63 ? C26 UR2 113 A 1 HETATM 12 C C27 UR2 . . . B 2 -1.646 58.782 -9.324 1 10.39 ? C27 UR2 113 A 1 HETATM 13 C C28 UR2 . . . B 2 -1.792 57.517 -8.469 1 12.57 ? C28 UR2 113 A 1 HETATM 14 C C29 UR2 . . . B 2 -0.481 57.039 -7.804 1 14.23 ? C29 UR2 113 A 1 HETATM 15 C C3 UR2 . . . B 2 -8.901 63.228 -8.124 1 11.6 ? C3 UR2 113 A 1 HETATM 16 C C30 UR2 . . . B 2 0.348 56.135 -8.747 1 14.99 ? C30 UR2 113 A 1 HETATM 17 C C31 UR2 . . . B 2 1.615 55.602 -8.067 1 15.04 ? C31 UR2 113 A 1 HETATM 18 C C32 UR2 . . . B 2 1.324 54.923 -6.718 1 13.8 ? C32 UR2 113 A 1 HETATM 19 C C33 UR2 . . . B 2 0.52 55.868 -5.815 1 12.66 ? C33 UR2 113 A 1 HETATM 20 C C34 UR2 . . . B 2 -0.774 56.287 -6.5 1 13.07 ? C34 UR2 113 A 1 HETATM 21 C C4 UR2 . . . B 2 -8.398 64.526 -8.268 1 12.78 ? C4 UR2 113 A 1 HETATM 22 C C5 UR2 . . . B 2 -9.271 65.62 -8.123 1 10.71 ? C5 UR2 113 A 1 HETATM 23 C C6 UR2 . . . B 2 -10.625 65.406 -7.82 1 6.67 ? C6 UR2 113 A 1 HETATM 24 C C7 UR2 . . . B 2 -6.929 64.719 -8.552 1 11.15 ? C7 UR2 113 A 1 HETATM 25 C C9 UR2 . . . B 2 -7.11 64.538 -11.073 1 20.25 ? C9 UR2 113 A 1 HETATM 26 N N15 UR2 . . . B 2 -5.143 62.487 -8.766 1 11.08 ? N15 UR2 113 A 1 HETATM 27 N N24 UR2 . . . B 2 -4.179 58.933 -9.588 1 7.02 ? N24 UR2 113 A 1 HETATM 28 N N8 UR2 . . . B 2 -6.497 64.065 -9.798 1 13.65 ? N8 UR2 113 A 1 HETATM 29 O O11 UR2 . . . B 2 -7.17 66.065 -12.884 1 30.91 ? O11 UR2 113 A 1 HETATM 30 O O12 UR2 . . . B 2 -5.501 66.381 -11.464 1 26.3 ? O12 UR2 113 A 1 HETATM 31 O O14 UR2 . . . B 2 -5.214 62.604 -10.975 1 14 ? O14 UR2 113 A 1 HETATM 32 O O1P UR2 . . . B 2 -13.686 64.491 -9.317 1 14.52 ? O1P UR2 113 A 1 HETATM 33 O O20 UR2 . . . B 2 -1.9 64.404 -8.013 1 16.67 ? O20 UR2 113 A 1 HETATM 34 O O21 UR2 . . . B 2 -1.154 62.447 -8.555 1 16.15 ? O21 UR2 113 A 1 HETATM 35 O O23 UR2 . . . B 2 -6.052 59.892 -8.818 1 8.67 ? O23 UR2 113 A 1 HETATM 36 O O2P UR2 . . . B 2 -14.748 63.423 -7.304 1 13.46 ? O2P UR2 113 A 1 HETATM 37 O O3P UR2 . . . B 2 -13.084 62.069 -8.691 1 13.65 ? O3P UR2 113 A 1 HETATM 38 O O4P UR2 . . . B 2 -12.409 63.941 -7.226 1 10.64 ? O4P UR2 113 A 1 HETATM 39 P P UR2 . . . B 2 -13.511 63.451 -8.206 1 13.04 ? P UR2 113 A 1 HETATM 40 H H16 UR2 . . . B 2 -3.424 61.618 -9.539 0 0 ? H16 UR2 113 A 1 HETATM 41 H H171 UR2 . . . B 2 -4.292 61.034 -6.655 0 0 ? H171 UR2 113 A 1 HETATM 42 H H172 UR2 . . . B 2 -2.792 60.491 -7.344 0 0 ? H172 UR2 113 A 1 HETATM 43 H H181 UR2 . . . B 2 -3.576 63.33 -6.612 0 0 ? H181 UR2 113 A 1 HETATM 44 H H182 UR2 . . . B 2 -2.249 62.374 -5.986 0 0 ? H182 UR2 113 A 1 HETATM 45 H H2 UR2 . . . B 2 -10.637 62.023 -7.66 0 0 ? H2 UR2 113 A 1 HETATM 46 H H251 UR2 . . . B 2 -4.291 56.843 -9.934 0 0 ? H251 UR2 113 A 1 HETATM 47 H H252 UR2 . . . B 2 -5.789 57.746 -10.232 0 0 ? H252 UR2 113 A 1 HETATM 48 H H253 UR2 . . . B 2 -5.272 57.445 -8.563 0 0 ? H253 UR2 113 A 1 HETATM 49 H H262 UR2 . . . B 2 -2.735 59.952 -10.745 0 0 ? H262 UR2 113 A 1 HETATM 50 H H271 UR2 . . . B 2 -1.452 59.658 -8.707 0 0 ? H271 UR2 113 A 1 HETATM 51 H H272 UR2 . . . B 2 -0.767 58.709 -9.965 0 0 ? H272 UR2 113 A 1 HETATM 52 H H281 UR2 . . . B 2 -2.53 57.751 -7.698 0 0 ? H281 UR2 113 A 1 HETATM 53 H H282 UR2 . . . B 2 -2.215 56.7 -9.056 0 0 ? H282 UR2 113 A 1 HETATM 54 H H29 UR2 . . . B 2 0.108 57.919 -7.544 0 0 ? H29 UR2 113 A 1 HETATM 55 H H3 UR2 . . . B 2 -8.227 62.386 -8.226 0 0 ? H3 UR2 113 A 1 HETATM 56 H H301 UR2 . . . B 2 0.63 56.694 -9.641 0 0 ? H301 UR2 113 A 1 HETATM 57 H H302 UR2 . . . B 2 -0.255 55.294 -9.087 0 0 ? H302 UR2 113 A 1 HETATM 58 H H311 UR2 . . . B 2 2.282 56.451 -7.89 0 0 ? H311 UR2 113 A 1 HETATM 59 H H312 UR2 . . . B 2 2.159 54.928 -8.731 0 0 ? H312 UR2 113 A 1 HETATM 60 H H321 UR2 . . . B 2 2.251 54.631 -6.218 0 0 ? H321 UR2 113 A 1 HETATM 61 H H322 UR2 . . . B 2 0.771 53.993 -6.855 0 0 ? H322 UR2 113 A 1 HETATM 62 H H331 UR2 . . . B 2 1.101 56.763 -5.573 0 0 ? H331 UR2 113 A 1 HETATM 63 H H332 UR2 . . . B 2 0.303 55.375 -4.861 0 0 ? H332 UR2 113 A 1 HETATM 64 H H341 UR2 . . . B 2 -1.373 55.394 -6.691 0 0 ? H341 UR2 113 A 1 HETATM 65 H H342 UR2 . . . B 2 -1.354 56.915 -5.818 0 0 ? H342 UR2 113 A 1 HETATM 66 H H5 UR2 . . . B 2 -8.895 66.629 -8.228 0 0 ? H5 UR2 113 A 1 HETATM 67 H H6 UR2 . . . B 2 -11.338 66.21 -7.693 0 0 ? H6 UR2 113 A 1 HETATM 68 H H71 UR2 . . . B 2 -6.353 64.367 -7.696 0 0 ? H71 UR2 113 A 1 HETATM 69 H H72 UR2 . . . B 2 -6.671 65.778 -8.641 0 0 ? H72 UR2 113 A 1 HETATM 70 H H91 UR2 . . . B 2 -7.106 63.743 -11.811 0 0 ? H91 UR2 113 A 1 HETATM 71 H H92 UR2 . . . B 2 -8.156 64.775 -10.903 0 0 ? H92 UR2 113 A 1 HETATM 72 H HN5 UR2 . . . B 2 -5.487 62.83 -7.896 0 0 ? HN5 UR2 113 A 1 HETATM 73 H HO1 UR2 . . . B 2 -6.803 66.849 -13.265 0 0 ? HO1 UR2 113 A 1 HETATM 74 H HOP3 UR2 . . . B 2 -12.857 61.669 -7.864 0 0 ? HOP3 UR2 113 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 74 #