data_1SKW # _model_server_result.job_id v1235zoBvKPNF9CjK_qLsA _model_server_result.datetime_utc '2024-10-26 18:17:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1skw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":4003}' # _entry.id 1SKW # _exptl.entry_id 1SKW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1SKW _cell.length_a 104.718 _cell.length_b 211.493 _cell.length_c 52.187 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SKW _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' DC 20 P DC 20 1_555 A P 2DT 21 P 2DT 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.606 ? metalc ? metalc1 C OD1 ASP 5 A ASP 5 1_555 E MG MG . A MG 4003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc2 E MG MG . A MG 4003 1_555 H O HOH . A HOH 5030 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? metalc ? metalc3 E MG MG . A MG 4003 1_555 H O HOH . A HOH 5202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc4 E MG MG . A MG 4003 1_555 H O HOH . A HOH 5203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc5 E MG MG . A MG 4003 1_555 H O HOH . A HOH 5204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc6 E MG MG . A MG 4003 1_555 H O HOH . A HOH 5206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? hydrog WATSON-CRICK hydrog1 A N3 DC 14 P DC 14 1_555 B N1 DG 12 T DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 14 P DC 14 1_555 B O6 DG 12 T DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 14 P DC 14 1_555 B N2 DG 12 T DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DA 15 P DA 15 1_555 B N3 DT 11 T DT 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N6 DA 15 P DA 15 1_555 B O4 DT 11 T DT 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N1 DG 16 P DG 16 1_555 B N3 DC 10 T DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N2 DG 16 P DG 16 1_555 B O2 DC 10 T DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O6 DG 16 P DG 16 1_555 B N4 DC 10 T DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N3 DT 17 P DT 17 1_555 B N1 DA 9 T DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A O4 DT 17 P DT 17 1_555 B N6 DA 9 T DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N1 DG 18 P DG 18 1_555 B N3 DC 8 T DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N2 DG 18 P DG 18 1_555 B O2 DC 8 T DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A O6 DG 18 P DG 18 1_555 B N4 DC 8 T DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N3 DC 19 P DC 19 1_555 B N1 DG 7 T DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N4 DC 19 P DC 19 1_555 B O6 DG 7 T DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A O2 DC 19 P DC 19 1_555 B N2 DG 7 T DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N3 DC 20 P DC 20 1_555 B N1 DG 6 T DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N4 DC 20 P DC 20 1_555 B O6 DG 6 T DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A O2 DC 20 P DC 20 1_555 B N2 DG 6 T DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N3 2DT 21 P 2DT 21 1_555 B N1 DA 5 T DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A O4 2DT 21 P 2DT 21 1_555 B N6 DA 5 T DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1SKW _atom_sites.fract_transf_matrix[1][1] 0.009549 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004728 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019162 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 MG A 1 4003 4003 MG MG . F 6 HOH P 1 5006 5006 HOH HOH . F 6 HOH P 2 5091 5091 HOH HOH . F 6 HOH P 3 5101 5101 HOH HOH . F 6 HOH P 4 5120 5120 HOH HOH . F 6 HOH P 5 5122 5122 HOH HOH . F 6 HOH P 6 5137 5137 HOH HOH . F 6 HOH P 7 5143 5143 HOH HOH . F 6 HOH P 8 5195 5195 HOH HOH . G 6 HOH T 1 5008 5008 HOH HOH . G 6 HOH T 2 5018 5018 HOH HOH . G 6 HOH T 3 5029 5029 HOH HOH . G 6 HOH T 4 5068 5068 HOH HOH . G 6 HOH T 5 5074 5074 HOH HOH . G 6 HOH T 6 5081 5081 HOH HOH . G 6 HOH T 7 5109 5109 HOH HOH . G 6 HOH T 8 5124 5124 HOH HOH . G 6 HOH T 9 5131 5131 HOH HOH . G 6 HOH T 10 5141 5141 HOH HOH . G 6 HOH T 11 5196 5196 HOH HOH . H 6 HOH A 1 5001 5001 HOH HOH . H 6 HOH A 2 5002 5002 HOH HOH . H 6 HOH A 3 5003 5003 HOH HOH . H 6 HOH A 4 5004 5004 HOH HOH . H 6 HOH A 5 5005 5005 HOH HOH . H 6 HOH A 6 5007 5007 HOH HOH . H 6 HOH A 7 5009 5009 HOH HOH . H 6 HOH A 8 5010 5010 HOH HOH . H 6 HOH A 9 5011 5011 HOH HOH . H 6 HOH A 10 5012 5012 HOH HOH . H 6 HOH A 11 5013 5013 HOH HOH . H 6 HOH A 12 5014 5014 HOH HOH . H 6 HOH A 13 5015 5015 HOH HOH . H 6 HOH A 14 5016 5016 HOH HOH . H 6 HOH A 15 5017 5017 HOH HOH . H 6 HOH A 16 5019 5019 HOH HOH . H 6 HOH A 17 5021 5021 HOH HOH . H 6 HOH A 18 5022 5022 HOH HOH . H 6 HOH A 19 5023 5023 HOH HOH . H 6 HOH A 20 5024 5024 HOH HOH . H 6 HOH A 21 5025 5025 HOH HOH . H 6 HOH A 22 5027 5027 HOH HOH . H 6 HOH A 23 5028 5028 HOH HOH . H 6 HOH A 24 5030 5030 HOH HOH . H 6 HOH A 25 5031 5031 HOH HOH . H 6 HOH A 26 5032 5032 HOH HOH . H 6 HOH A 27 5033 5033 HOH HOH . H 6 HOH A 28 5034 5034 HOH HOH . H 6 HOH A 29 5035 5035 HOH HOH . H 6 HOH A 30 5036 5036 HOH HOH . H 6 HOH A 31 5037 5037 HOH HOH . H 6 HOH A 32 5038 5038 HOH HOH . H 6 HOH A 33 5039 5039 HOH HOH . H 6 HOH A 34 5040 5040 HOH HOH . H 6 HOH A 35 5041 5041 HOH HOH . H 6 HOH A 36 5042 5042 HOH HOH . H 6 HOH A 37 5043 5043 HOH HOH . H 6 HOH A 38 5044 5044 HOH HOH . H 6 HOH A 39 5045 5045 HOH HOH . H 6 HOH A 40 5046 5046 HOH HOH . H 6 HOH A 41 5047 5047 HOH HOH . H 6 HOH A 42 5048 5048 HOH HOH . H 6 HOH A 43 5049 5049 HOH HOH . H 6 HOH A 44 5050 5050 HOH HOH . H 6 HOH A 45 5052 5052 HOH HOH . H 6 HOH A 46 5053 5053 HOH HOH . H 6 HOH A 47 5054 5054 HOH HOH . H 6 HOH A 48 5055 5055 HOH HOH . H 6 HOH A 49 5056 5056 HOH HOH . H 6 HOH A 50 5057 5057 HOH HOH . H 6 HOH A 51 5059 5059 HOH HOH . H 6 HOH A 52 5060 5060 HOH HOH . H 6 HOH A 53 5061 5061 HOH HOH . H 6 HOH A 54 5062 5062 HOH HOH . H 6 HOH A 55 5063 5063 HOH HOH . H 6 HOH A 56 5064 5064 HOH HOH . H 6 HOH A 57 5065 5065 HOH HOH . H 6 HOH A 58 5066 5066 HOH HOH . H 6 HOH A 59 5067 5067 HOH HOH . H 6 HOH A 60 5069 5069 HOH HOH . H 6 HOH A 61 5070 5070 HOH HOH . H 6 HOH A 62 5072 5072 HOH HOH . H 6 HOH A 63 5073 5073 HOH HOH . H 6 HOH A 64 5075 5075 HOH HOH . H 6 HOH A 65 5076 5076 HOH HOH . H 6 HOH A 66 5077 5077 HOH HOH . H 6 HOH A 67 5079 5079 HOH HOH . H 6 HOH A 68 5080 5080 HOH HOH . H 6 HOH A 69 5082 5082 HOH HOH . H 6 HOH A 70 5083 5083 HOH HOH . H 6 HOH A 71 5084 5084 HOH HOH . H 6 HOH A 72 5085 5085 HOH HOH . H 6 HOH A 73 5086 5086 HOH HOH . H 6 HOH A 74 5087 5087 HOH HOH . H 6 HOH A 75 5088 5088 HOH HOH . H 6 HOH A 76 5089 5089 HOH HOH . H 6 HOH A 77 5090 5090 HOH HOH . H 6 HOH A 78 5092 5092 HOH HOH . H 6 HOH A 79 5093 5093 HOH HOH . H 6 HOH A 80 5094 5094 HOH HOH . H 6 HOH A 81 5095 5095 HOH HOH . H 6 HOH A 82 5096 5096 HOH HOH . H 6 HOH A 83 5097 5097 HOH HOH . H 6 HOH A 84 5098 5098 HOH HOH . H 6 HOH A 85 5099 5099 HOH HOH . H 6 HOH A 86 5100 5100 HOH HOH . H 6 HOH A 87 5102 5102 HOH HOH . H 6 HOH A 88 5104 5104 HOH HOH . H 6 HOH A 89 5105 5105 HOH HOH . H 6 HOH A 90 5106 5106 HOH HOH . H 6 HOH A 91 5107 5107 HOH HOH . H 6 HOH A 92 5108 5108 HOH HOH . H 6 HOH A 93 5110 5110 HOH HOH . H 6 HOH A 94 5111 5111 HOH HOH . H 6 HOH A 95 5112 5112 HOH HOH . H 6 HOH A 96 5113 5113 HOH HOH . H 6 HOH A 97 5114 5114 HOH HOH . H 6 HOH A 98 5115 5115 HOH HOH . H 6 HOH A 99 5117 5117 HOH HOH . H 6 HOH A 100 5118 5118 HOH HOH . H 6 HOH A 101 5119 5119 HOH HOH . H 6 HOH A 102 5121 5121 HOH HOH . H 6 HOH A 103 5123 5123 HOH HOH . H 6 HOH A 104 5125 5125 HOH HOH . H 6 HOH A 105 5126 5126 HOH HOH . H 6 HOH A 106 5127 5127 HOH HOH . H 6 HOH A 107 5128 5128 HOH HOH . H 6 HOH A 108 5129 5129 HOH HOH . H 6 HOH A 109 5130 5130 HOH HOH . H 6 HOH A 110 5132 5132 HOH HOH . H 6 HOH A 111 5133 5133 HOH HOH . H 6 HOH A 112 5134 5134 HOH HOH . H 6 HOH A 113 5136 5136 HOH HOH . H 6 HOH A 114 5138 5138 HOH HOH . H 6 HOH A 115 5139 5139 HOH HOH . H 6 HOH A 116 5140 5140 HOH HOH . H 6 HOH A 117 5142 5142 HOH HOH . H 6 HOH A 118 5144 5144 HOH HOH . H 6 HOH A 119 5145 5145 HOH HOH . H 6 HOH A 120 5146 5146 HOH HOH . H 6 HOH A 121 5147 5147 HOH HOH . H 6 HOH A 122 5148 5148 HOH HOH . H 6 HOH A 123 5149 5149 HOH HOH . H 6 HOH A 124 5150 5150 HOH HOH . H 6 HOH A 125 5151 5151 HOH HOH . H 6 HOH A 126 5152 5152 HOH HOH . H 6 HOH A 127 5153 5153 HOH HOH . H 6 HOH A 128 5154 5154 HOH HOH . H 6 HOH A 129 5156 5156 HOH HOH . H 6 HOH A 130 5157 5157 HOH HOH . H 6 HOH A 131 5158 5158 HOH HOH . H 6 HOH A 132 5161 5161 HOH HOH . H 6 HOH A 133 5162 5162 HOH HOH . H 6 HOH A 134 5163 5163 HOH HOH . H 6 HOH A 135 5164 5164 HOH HOH . H 6 HOH A 136 5165 5165 HOH HOH . H 6 HOH A 137 5166 5166 HOH HOH . H 6 HOH A 138 5167 5167 HOH HOH . H 6 HOH A 139 5168 5168 HOH HOH . H 6 HOH A 140 5169 5169 HOH HOH . H 6 HOH A 141 5170 5170 HOH HOH . H 6 HOH A 142 5171 5171 HOH HOH . H 6 HOH A 143 5172 5172 HOH HOH . H 6 HOH A 144 5173 5173 HOH HOH . H 6 HOH A 145 5174 5174 HOH HOH . H 6 HOH A 146 5175 5175 HOH HOH . H 6 HOH A 147 5176 5176 HOH HOH . H 6 HOH A 148 5177 5177 HOH HOH . H 6 HOH A 149 5180 5180 HOH HOH . H 6 HOH A 150 5181 5181 HOH HOH . H 6 HOH A 151 5183 5183 HOH HOH . H 6 HOH A 152 5184 5184 HOH HOH . H 6 HOH A 153 5185 5185 HOH HOH . H 6 HOH A 154 5188 5188 HOH HOH . H 6 HOH A 155 5189 5189 HOH HOH . H 6 HOH A 156 5191 5191 HOH HOH . H 6 HOH A 157 5192 5192 HOH HOH . H 6 HOH A 158 5193 5193 HOH HOH . H 6 HOH A 159 5194 5194 HOH HOH . H 6 HOH A 160 5198 5198 HOH HOH . H 6 HOH A 161 5199 5199 HOH HOH . H 6 HOH A 162 5201 5201 HOH HOH . H 6 HOH A 163 5202 5202 HOH HOH . H 6 HOH A 164 5203 5203 HOH HOH . H 6 HOH A 165 5204 5204 HOH HOH . H 6 HOH A 166 5205 5205 HOH HOH . H 6 HOH A 167 5206 5206 HOH HOH . I 6 HOH B 1 5020 5020 HOH HOH . I 6 HOH B 2 5051 5051 HOH HOH . I 6 HOH B 3 5058 5058 HOH HOH . I 6 HOH B 4 5071 5071 HOH HOH . I 6 HOH B 5 5078 5078 HOH HOH . I 6 HOH B 6 5103 5103 HOH HOH . I 6 HOH B 7 5116 5116 HOH HOH . I 6 HOH B 8 5135 5135 HOH HOH . I 6 HOH B 9 5155 5155 HOH HOH . I 6 HOH B 10 5159 5159 HOH HOH . I 6 HOH B 11 5160 5160 HOH HOH . I 6 HOH B 12 5178 5178 HOH HOH . I 6 HOH B 13 5190 5190 HOH HOH . I 6 HOH B 14 5197 5197 HOH HOH . I 6 HOH B 15 5200 5200 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 5 _atom_site.Cartn_x 78.479 _atom_site.Cartn_y 23.388 _atom_site.Cartn_z 7.739 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 44.68 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 4003 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #