data_1SKX # _model_server_result.job_id mg3lkfKE2eAfUbmDUmfkRw _model_server_result.datetime_utc '2025-02-27 00:21:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1skx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 1SKX # _exptl.entry_id 1SKX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 822.94 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RIFAMPICIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1SKX _cell.length_a 91.537 _cell.length_b 91.537 _cell.length_c 85.504 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SKX _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C43 H58 N4 O12' _chem_comp.formula_weight 822.94 _chem_comp.id RFP _chem_comp.mon_nstd_flag . _chem_comp.name RIFAMPICIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RFP doub 277 n y C1 C9 RFP sing 278 n y C1 O1 RFP sing 279 n n C2 C3 RFP sing 280 n y C2 N1 RFP sing 281 n n C3 C4 RFP doub 282 n y C3 C43 RFP sing 283 n n C4 C10 RFP sing 284 n y C4 O12 RFP sing 285 n n C5 C6 RFP doub 286 n y C5 C10 RFP sing 287 n y C5 C11 RFP sing 288 n n C6 C7 RFP sing 289 n y C6 O3 RFP sing 290 n n C7 C8 RFP doub 291 n y C7 C14 RFP sing 292 n n C8 C9 RFP sing 293 n y C8 O2 RFP sing 294 n n C9 C10 RFP doub 295 n y C11 C12 RFP sing 296 n n C11 O4 RFP doub 297 n n C12 C13 RFP sing 298 n n C12 O3 RFP sing 299 n n C12 O5 RFP sing 300 n n C13 H131 RFP sing 301 n n C13 H132 RFP sing 302 n n C13 H133 RFP sing 303 n n C14 H141 RFP sing 304 n n C14 H142 RFP sing 305 n n C14 H143 RFP sing 306 n n C15 C16 RFP sing 307 n n C15 N1 RFP sing 308 n n C15 O11 RFP doub 309 n n C16 C17 RFP doub 310 z n C16 C30 RFP sing 311 n n C17 C18 RFP sing 312 n n C17 H17C RFP sing 313 n n C18 C19 RFP doub 314 e n C18 H18C RFP sing 315 n n C19 C20 RFP sing 316 n n C19 H19C RFP sing 317 n n C20 C21 RFP sing 318 n n C20 C31 RFP sing 319 n n C20 H20C RFP sing 320 n n C21 C22 RFP sing 321 n n C21 O10 RFP sing 322 n n C21 H211 RFP sing 323 n n C22 C23 RFP sing 324 n n C22 C32 RFP sing 325 n n C22 H22C RFP sing 326 n n C23 C24 RFP sing 327 n n C23 O9 RFP sing 328 n n C23 H23C RFP sing 329 n n C24 C25 RFP sing 330 n n C24 C33 RFP sing 331 n n C24 H24C RFP sing 332 n n C25 C26 RFP sing 333 n n C25 O7 RFP sing 334 n n C25 H25C RFP sing 335 n n C26 C27 RFP sing 336 n n C26 C34 RFP sing 337 n n C26 H26C RFP sing 338 n n C27 C28 RFP sing 339 n n C27 O6 RFP sing 340 n n C27 H27C RFP sing 341 n n C28 C29 RFP doub 342 e n C28 H28C RFP sing 343 n n C29 O5 RFP sing 344 n n C29 H29C RFP sing 345 n n C30 H301 RFP sing 346 n n C30 H302 RFP sing 347 n n C30 H303 RFP sing 348 n n C31 H311 RFP sing 349 n n C31 H312 RFP sing 350 n n C31 H313 RFP sing 351 n n C32 H321 RFP sing 352 n n C32 H322 RFP sing 353 n n C32 H323 RFP sing 354 n n C33 H331 RFP sing 355 n n C33 H332 RFP sing 356 n n C33 H333 RFP sing 357 n n C34 H341 RFP sing 358 n n C34 H342 RFP sing 359 n n C34 H343 RFP sing 360 n n C35 C36 RFP sing 361 n n C35 O7 RFP sing 362 n n C35 O8 RFP doub 363 n n C36 H361 RFP sing 364 n n C36 H362 RFP sing 365 n n C36 H363 RFP sing 366 n n C37 O6 RFP sing 367 n n C37 H371 RFP sing 368 n n C37 H372 RFP sing 369 n n C37 H373 RFP sing 370 n n C38 N4 RFP sing 371 n n C38 H381 RFP sing 372 n n C38 H382 RFP sing 373 n n C38 H383 RFP sing 374 n n C39 C40 RFP sing 375 n n C39 N4 RFP sing 376 n n C39 H391 RFP sing 377 n n C39 H392 RFP sing 378 n n C40 N3 RFP sing 379 n n C40 H401 RFP sing 380 n n C40 H402 RFP sing 381 n n C41 C42 RFP sing 382 n n C41 N3 RFP sing 383 n n C41 H411 RFP sing 384 n n C41 H412 RFP sing 385 n n C42 N4 RFP sing 386 n n C42 H421 RFP sing 387 n n C42 H422 RFP sing 388 n n C43 N2 RFP doub 389 e n C43 HC43 RFP sing 390 n n N1 HN1 RFP sing 391 n n N2 N3 RFP sing 392 n n O1 HO1 RFP sing 393 n n O2 HO2 RFP sing 394 n n O9 HO9 RFP sing 395 n n O10 H10O RFP sing 396 n n O12 H12O RFP sing 397 n n # _atom_sites.entry_id 1SKX _atom_sites.fract_transf_matrix[1][1] 0.010925 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010925 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011695 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RFP A 1 1 1 RFP RFP . C 3 HOH A 1 521 521 HOH HOH . C 3 HOH A 2 522 522 HOH HOH . C 3 HOH A 3 523 523 HOH HOH . C 3 HOH A 4 524 524 HOH HOH . C 3 HOH A 5 525 525 HOH HOH . C 3 HOH A 6 526 526 HOH HOH . C 3 HOH A 7 527 527 HOH HOH . C 3 HOH A 8 528 528 HOH HOH . C 3 HOH A 9 529 529 HOH HOH . C 3 HOH A 10 530 530 HOH HOH . C 3 HOH A 11 531 531 HOH HOH . C 3 HOH A 12 532 532 HOH HOH . C 3 HOH A 13 533 533 HOH HOH . C 3 HOH A 14 534 534 HOH HOH . C 3 HOH A 15 535 535 HOH HOH . C 3 HOH A 16 536 536 HOH HOH . C 3 HOH A 17 537 537 HOH HOH . C 3 HOH A 18 538 538 HOH HOH . C 3 HOH A 19 539 539 HOH HOH . C 3 HOH A 20 540 540 HOH HOH . C 3 HOH A 21 541 541 HOH HOH . C 3 HOH A 22 542 542 HOH HOH . C 3 HOH A 23 543 543 HOH HOH . C 3 HOH A 24 544 544 HOH HOH . C 3 HOH A 25 545 545 HOH HOH . C 3 HOH A 26 546 546 HOH HOH . C 3 HOH A 27 547 547 HOH HOH . C 3 HOH A 28 548 548 HOH HOH . C 3 HOH A 29 549 549 HOH HOH . C 3 HOH A 30 550 550 HOH HOH . C 3 HOH A 31 551 551 HOH HOH . C 3 HOH A 32 552 552 HOH HOH . C 3 HOH A 33 553 553 HOH HOH . C 3 HOH A 34 554 554 HOH HOH . C 3 HOH A 35 555 555 HOH HOH . C 3 HOH A 36 556 556 HOH HOH . C 3 HOH A 37 557 557 HOH HOH . C 3 HOH A 38 558 558 HOH HOH . C 3 HOH A 39 559 559 HOH HOH . C 3 HOH A 40 560 560 HOH HOH . C 3 HOH A 41 561 561 HOH HOH . C 3 HOH A 42 562 562 HOH HOH . C 3 HOH A 43 563 563 HOH HOH . C 3 HOH A 44 564 564 HOH HOH . C 3 HOH A 45 565 565 HOH HOH . C 3 HOH A 46 566 566 HOH HOH . C 3 HOH A 47 567 567 HOH HOH . C 3 HOH A 48 568 568 HOH HOH . C 3 HOH A 49 569 569 HOH HOH . C 3 HOH A 50 570 570 HOH HOH . C 3 HOH A 51 571 571 HOH HOH . C 3 HOH A 52 572 572 HOH HOH . C 3 HOH A 53 573 573 HOH HOH . C 3 HOH A 54 574 574 HOH HOH . C 3 HOH A 55 575 575 HOH HOH . C 3 HOH A 56 576 576 HOH HOH . C 3 HOH A 57 577 577 HOH HOH . C 3 HOH A 58 578 578 HOH HOH . C 3 HOH A 59 579 579 HOH HOH . C 3 HOH A 60 580 580 HOH HOH . C 3 HOH A 61 581 581 HOH HOH . C 3 HOH A 62 582 582 HOH HOH . C 3 HOH A 63 583 583 HOH HOH . C 3 HOH A 64 584 584 HOH HOH . C 3 HOH A 65 585 585 HOH HOH . C 3 HOH A 66 586 586 HOH HOH . C 3 HOH A 67 587 587 HOH HOH . C 3 HOH A 68 588 588 HOH HOH . C 3 HOH A 69 589 589 HOH HOH . C 3 HOH A 70 590 590 HOH HOH . C 3 HOH A 71 591 591 HOH HOH . C 3 HOH A 72 592 592 HOH HOH . C 3 HOH A 73 593 593 HOH HOH . C 3 HOH A 74 594 594 HOH HOH . C 3 HOH A 75 595 595 HOH HOH . C 3 HOH A 76 596 596 HOH HOH . C 3 HOH A 77 597 597 HOH HOH . C 3 HOH A 78 598 598 HOH HOH . C 3 HOH A 79 599 599 HOH HOH . C 3 HOH A 80 600 600 HOH HOH . C 3 HOH A 81 601 601 HOH HOH . C 3 HOH A 82 602 602 HOH HOH . C 3 HOH A 83 603 603 HOH HOH . C 3 HOH A 84 604 604 HOH HOH . C 3 HOH A 85 605 605 HOH HOH . C 3 HOH A 86 606 606 HOH HOH . C 3 HOH A 87 607 607 HOH HOH . C 3 HOH A 88 608 608 HOH HOH . C 3 HOH A 89 609 609 HOH HOH . C 3 HOH A 90 610 610 HOH HOH . C 3 HOH A 91 611 611 HOH HOH . C 3 HOH A 92 612 612 HOH HOH . C 3 HOH A 93 613 613 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RFP . . . B 2 14.806 77.125 -1.21 1 64.23 ? C1 RFP 1 A 1 HETATM 2 C C2 RFP . . . B 2 14.953 76.751 -2.593 1 63.55 ? C2 RFP 1 A 1 HETATM 3 C C3 RFP . . . B 2 14.241 77.375 -3.647 1 64.11 ? C3 RFP 1 A 1 HETATM 4 C C4 RFP . . . B 2 13.348 78.432 -3.331 1 64.98 ? C4 RFP 1 A 1 HETATM 5 C C5 RFP . . . B 2 12.215 79.956 -1.564 1 63.37 ? C5 RFP 1 A 1 HETATM 6 C C6 RFP . . . B 2 12.088 80.304 -0.164 1 63.57 ? C6 RFP 1 A 1 HETATM 7 C C7 RFP . . . B 2 12.755 79.735 0.904 1 62.43 ? C7 RFP 1 A 1 HETATM 8 C C8 RFP . . . B 2 13.698 78.64 0.582 1 64.25 ? C8 RFP 1 A 1 HETATM 9 C C9 RFP . . . B 2 13.888 78.21 -0.877 1 64.46 ? C9 RFP 1 A 1 HETATM 10 C C10 RFP . . . B 2 13.141 78.861 -1.979 1 64.85 ? C10 RFP 1 A 1 HETATM 11 C C11 RFP . . . B 2 11.347 80.802 -2.276 1 64.54 ? C11 RFP 1 A 1 HETATM 12 C C12 RFP . . . B 2 10.646 81.703 -1.287 1 64.67 ? C12 RFP 1 A 1 HETATM 13 C C13 RFP . . . B 2 10.916 83.176 -1.558 1 63.87 ? C13 RFP 1 A 1 HETATM 14 C C14 RFP . . . B 2 12.568 80.168 2.35 1 61.65 ? C14 RFP 1 A 1 HETATM 15 C C15 RFP . . . B 2 17.147 75.583 -2.766 1 66.95 ? C15 RFP 1 A 1 HETATM 16 C C16 RFP . . . B 2 17.64 74.255 -3.335 1 66.71 ? C16 RFP 1 A 1 HETATM 17 C C17 RFP . . . B 2 16.893 73.092 -3.337 1 66.67 ? C17 RFP 1 A 1 HETATM 18 C C18 RFP . . . B 2 15.523 72.841 -2.824 1 65.93 ? C18 RFP 1 A 1 HETATM 19 C C19 RFP . . . B 2 14.731 71.908 -3.315 1 64.44 ? C19 RFP 1 A 1 HETATM 20 C C20 RFP . . . B 2 13.238 71.937 -3.652 1 62.92 ? C20 RFP 1 A 1 HETATM 21 C C21 RFP . . . B 2 12.289 72.616 -2.635 1 59.36 ? C21 RFP 1 A 1 HETATM 22 C C22 RFP . . . B 2 10.769 72.547 -2.987 1 59.9 ? C22 RFP 1 A 1 HETATM 23 C C23 RFP . . . B 2 9.808 73.234 -1.99 1 58.88 ? C23 RFP 1 A 1 HETATM 24 C C24 RFP . . . B 2 9.459 74.694 -2.336 1 56.87 ? C24 RFP 1 A 1 HETATM 25 C C25 RFP . . . B 2 8.704 75.392 -1.187 1 58.02 ? C25 RFP 1 A 1 HETATM 26 C C26 RFP . . . B 2 9.142 76.908 -1.039 1 57.95 ? C26 RFP 1 A 1 HETATM 27 C C27 RFP . . . B 2 8.12 77.89 -0.389 1 59.54 ? C27 RFP 1 A 1 HETATM 28 C C28 RFP . . . B 2 8.622 79.33 -0.286 1 59.95 ? C28 RFP 1 A 1 HETATM 29 C C29 RFP . . . B 2 8.694 80.124 -1.346 1 61.62 ? C29 RFP 1 A 1 HETATM 30 C C30 RFP . . . B 2 19.036 74.327 -3.914 1 64.93 ? C30 RFP 1 A 1 HETATM 31 C C31 RFP . . . B 2 13.119 72.542 -5.082 1 61.29 ? C31 RFP 1 A 1 HETATM 32 C C32 RFP . . . B 2 10.278 71.093 -3.201 1 56.29 ? C32 RFP 1 A 1 HETATM 33 C C33 RFP . . . B 2 8.69 74.802 -3.666 1 56.59 ? C33 RFP 1 A 1 HETATM 34 C C34 RFP . . . B 2 10.469 76.87 -0.274 1 57.65 ? C34 RFP 1 A 1 HETATM 35 C C35 RFP . . . B 2 6.399 74.521 -0.626 1 60.22 ? C35 RFP 1 A 1 HETATM 36 C C36 RFP . . . B 2 5.021 74.498 -1.088 1 57.98 ? C36 RFP 1 A 1 HETATM 37 C C37 RFP . . . B 2 6.396 77.619 1.303 1 58.74 ? C37 RFP 1 A 1 HETATM 38 C C43 RFP . . . B 2 14.38 76.997 -5.048 1 62.89 ? C43 RFP 1 A 1 HETATM 39 N N1 RFP . . . B 2 15.815 75.705 -2.95 1 64.57 ? N1 RFP 1 A 1 HETATM 40 O O1 RFP . . . B 2 15.521 76.469 -0.266 1 64.51 ? O1 RFP 1 A 1 HETATM 41 O O2 RFP . . . B 2 14.356 78.045 1.513 1 63.98 ? O2 RFP 1 A 1 HETATM 42 O O3 RFP . . . B 2 11.174 81.33 0.027 1 64.29 ? O3 RFP 1 A 1 HETATM 43 O O4 RFP . . . B 2 11.084 80.914 -3.506 1 68.79 ? O4 RFP 1 A 1 HETATM 44 O O5 RFP . . . B 2 9.203 81.468 -1.313 1 63.08 ? O5 RFP 1 A 1 HETATM 45 O O6 RFP . . . B 2 7.796 77.401 0.963 1 57.66 ? O6 RFP 1 A 1 HETATM 46 O O7 RFP . . . B 2 7.215 75.25 -1.48 1 62.03 ? O7 RFP 1 A 1 HETATM 47 O O8 RFP . . . B 2 6.787 73.976 0.362 1 60.96 ? O8 RFP 1 A 1 HETATM 48 O O9 RFP . . . B 2 10.337 73.233 -0.628 1 55.51 ? O9 RFP 1 A 1 HETATM 49 O O10 RFP . . . B 2 12.533 71.977 -1.373 1 61.11 ? O10 RFP 1 A 1 HETATM 50 O O11 RFP . . . B 2 17.901 76.393 -2.224 1 69.07 ? O11 RFP 1 A 1 HETATM 51 O O12 RFP . . . B 2 12.698 78.98 -4.422 1 64.98 ? O12 RFP 1 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 51 #