data_1SL0 # _model_server_result.job_id 4cgjmrAw_dj3t_T84hTHfw _model_server_result.datetime_utc '2024-10-12 14:28:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1sl0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":4005}' # _entry.id 1SL0 # _exptl.entry_id 1SL0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 475.182 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2',3'-DIDEOXYADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.57 _cell.angle_gamma 90 _cell.entry_id 1SL0 _cell.length_a 54.266 _cell.length_b 105.466 _cell.length_c 213.931 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SL0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 J N N ? 6 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' DC 20 P DC 20 1_555 A P 2DT 21 P 2DT 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.593 ? covale ? covale2 C O3' DC 20 Q DC 20 1_555 C P 2DT 21 Q 2DT 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.6 ? metalc ? metalc1 E OD1 ASP 5 A ASP 5 1_555 I MG MG . A MG 4003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.864 ? metalc ? metalc2 G OD1 ASP 5 C ASP 5 1_555 K MG MG . C MG 4004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.013 ? metalc ? metalc3 G OD2 ASP 65 C ASP 65 1_555 K MG MG . C MG 4004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.979 ? metalc ? metalc4 G OD1 ASP 65 C ASP 65 1_555 K MG MG . C MG 4004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.929 ? hydrog WATSON-CRICK hydrog1 A N3 DC 13 P DC 13 1_555 B N1 DG 13 T DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 13 P DC 13 1_555 B O6 DG 13 T DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 13 P DC 13 1_555 B N2 DG 13 T DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DG PAIR' hydrog4 A N3 DC 14 P DC 14 1_555 B N2 DG 12 T DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N1 DA 15 P DA 15 1_555 B N3 DT 11 T DT 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N6 DA 15 P DA 15 1_555 B O4 DT 11 T DT 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N1 DG 16 P DG 16 1_555 B N3 DC 10 T DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N2 DG 16 P DG 16 1_555 B O2 DC 10 T DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O6 DG 16 P DG 16 1_555 B N4 DC 10 T DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N3 DT 17 P DT 17 1_555 B N1 DA 9 T DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A O4 DT 17 P DT 17 1_555 B N6 DA 9 T DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N1 DG 18 P DG 18 1_555 B N3 DC 8 T DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N2 DG 18 P DG 18 1_555 B O2 DC 8 T DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A O6 DG 18 P DG 18 1_555 B N4 DC 8 T DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N3 DC 19 P DC 19 1_555 B N1 DG 7 T DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N4 DC 19 P DC 19 1_555 B O6 DG 7 T DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A O2 DC 19 P DC 19 1_555 B N2 DG 7 T DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N3 DC 20 P DC 20 1_555 B N1 DG 6 T DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N4 DC 20 P DC 20 1_555 B O6 DG 6 T DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A O2 DC 20 P DC 20 1_555 B N2 DG 6 T DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog '2DT-DA PAIR' hydrog21 A N3 2DT 21 P 2DT 21 1_555 B N1 DA 5 T DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DG PAIR' hydrog22 C N4 DC 13 Q DC 13 1_555 D O6 DG 12 U DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 C N3 DC 13 Q DC 13 1_555 D N1 DG 13 U DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 C N4 DC 13 Q DC 13 1_555 D O6 DG 13 U DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 C O2 DC 13 Q DC 13 1_555 D N2 DG 13 U DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 C N1 DA 15 Q DA 15 1_555 D N3 DT 11 U DT 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 C N6 DA 15 Q DA 15 1_555 D O4 DT 11 U DT 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 C N1 DG 16 Q DG 16 1_555 D N3 DC 10 U DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 C N2 DG 16 Q DG 16 1_555 D O2 DC 10 U DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 C O6 DG 16 Q DG 16 1_555 D N4 DC 10 U DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DT MISPAIR' hydrog31 C N2 DG 16 Q DG 16 1_555 D O2 DT 11 U DT 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 C N3 DT 17 Q DT 17 1_555 D N1 DA 9 U DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 C O4 DT 17 Q DT 17 1_555 D N6 DA 9 U DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 C N1 DG 18 Q DG 18 1_555 D N3 DC 8 U DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 C N2 DG 18 Q DG 18 1_555 D O2 DC 8 U DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 C O6 DG 18 Q DG 18 1_555 D N4 DC 8 U DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 C N3 DC 19 Q DC 19 1_555 D N1 DG 7 U DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 C N4 DC 19 Q DC 19 1_555 D O6 DG 7 U DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog39 C O2 DC 19 Q DC 19 1_555 D N2 DG 7 U DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DG PAIR' hydrog40 C O2 DC 20 Q DC 20 1_555 D N2 DG 6 U DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog41 C N3 2DT 21 Q 2DT 21 1_555 D N1 DA 5 U DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog42 C O4 2DT 21 Q 2DT 21 1_555 D N6 DA 5 U DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C10 H16 N5 O11 P3' _chem_comp.formula_weight 475.182 _chem_comp.id DAD _chem_comp.mon_nstd_flag . _chem_comp.name "2',3'-DIDEOXYADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G DAD doub 157 n n PG O2G DAD sing 158 n n PG O3G DAD sing 159 n n PG O3B DAD sing 160 n n O2G HOG2 DAD sing 161 n n O3G HOG3 DAD sing 162 n n PB O1B DAD doub 163 n n PB O2B DAD sing 164 n n PB O3B DAD sing 165 n n PB O3A DAD sing 166 n n O2B HOB2 DAD sing 167 n n PA O1A DAD doub 168 n n PA O2A DAD sing 169 n n PA O3A DAD sing 170 n n PA O5' DAD sing 171 n n O2A HOA2 DAD sing 172 n n O5' C5' DAD sing 173 n n C5' C4' DAD sing 174 n n C5' "H5'1" DAD sing 175 n n C5' "H5'2" DAD sing 176 n n C4' O4' DAD sing 177 n n C4' C3' DAD sing 178 n n C4' H4' DAD sing 179 n n O4' C1' DAD sing 180 n n C3' C2' DAD sing 181 n n C3' "H3'1" DAD sing 182 n n C3' "H3'2" DAD sing 183 n n C2' C1' DAD sing 184 n n C2' "H2'1" DAD sing 185 n n C2' "H2'2" DAD sing 186 n n C1' N9 DAD sing 187 n n C1' H1' DAD sing 188 n n N9 C8 DAD sing 189 n y N9 C4 DAD sing 190 n y C8 N7 DAD doub 191 n y C8 H8 DAD sing 192 n n N7 C5 DAD sing 193 n y C5 C6 DAD sing 194 n y C5 C4 DAD doub 195 n y C6 N6 DAD sing 196 n n C6 N1 DAD doub 197 n y N6 HN61 DAD sing 198 n n N6 HN62 DAD sing 199 n n N1 C2 DAD sing 200 n y C2 N3 DAD doub 201 n y C2 H2 DAD sing 202 n n N3 C4 DAD sing 203 n y # _atom_sites.entry_id 1SL0 _atom_sites.fract_transf_matrix[1][1] 0.018428 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000504 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009482 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004676 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 MG A 1 4003 4003 MG MG . J 6 DAD A 1 4004 22 DAD DA3 . K 5 MG C 1 4004 4003 MG MG . L 6 DAD C 1 4005 22 DAD DA3 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG DAD . . . L 6 -12.955 50.402 78.548 1 188.08 ? PG DAD 4005 C 1 HETATM 2 O O1G DAD . . . L 6 -12.91 50.337 80.033 1 132.67 ? O1G DAD 4005 C 1 HETATM 3 O O2G DAD . . . L 6 -14.023 51.192 77.879 1 132.67 ? O2G DAD 4005 C 1 HETATM 4 O O3G DAD . . . L 6 -13.075 48.978 78.015 1 132.67 ? O3G DAD 4005 C 1 HETATM 5 P PB DAD . . . L 6 -10.82 52.303 78.362 1 188.08 ? PB DAD 4005 C 1 HETATM 6 O O1B DAD . . . L 6 -9.482 52.279 77.708 1 132.67 ? O1B DAD 4005 C 1 HETATM 7 O O2B DAD . . . L 6 -11.765 53.41 78.046 1 132.67 ? O2B DAD 4005 C 1 HETATM 8 O O3B DAD . . . L 6 -11.537 50.915 78.022 1 132.67 ? O3B DAD 4005 C 1 HETATM 9 P PA DAD . . . L 6 -11.301 53.036 81.121 1 188.08 ? PA DAD 4005 C 1 HETATM 10 O O1A DAD . . . L 6 -11.522 52.093 82.252 1 132.67 ? O1A DAD 4005 C 1 HETATM 11 O O2A DAD . . . L 6 -12.46 53.774 80.55 1 132.67 ? O2A DAD 4005 C 1 HETATM 12 O O3A DAD . . . L 6 -10.578 52.237 79.941 1 132.67 ? O3A DAD 4005 C 1 HETATM 13 O O5' DAD . . . L 6 -10.199 54.099 81.573 1 188.08 ? O5' DAD 4005 C 1 HETATM 14 C C5' DAD . . . L 6 -10.439 55.499 81.43 1 188.08 ? C5' DAD 4005 C 1 HETATM 15 C C4' DAD . . . L 6 -9.252 56.177 80.786 1 188.08 ? C4' DAD 4005 C 1 HETATM 16 O O4' DAD . . . L 6 -8.125 56.162 81.697 1 188.08 ? O4' DAD 4005 C 1 HETATM 17 C C3' DAD . . . L 6 -8.762 55.535 79.485 1 188.08 ? C3' DAD 4005 C 1 HETATM 18 C C2' DAD . . . L 6 -7.51 54.786 79.909 1 188.08 ? C2' DAD 4005 C 1 HETATM 19 C C1' DAD . . . L 6 -6.978 55.675 81.023 1 188.08 ? C1' DAD 4005 C 1 HETATM 20 N N9 DAD . . . L 6 -6.107 55.037 82.016 1 132.67 ? N9 DAD 4005 C 1 HETATM 21 C C8 DAD . . . L 6 -6.089 53.727 82.435 1 132.67 ? C8 DAD 4005 C 1 HETATM 22 N N7 DAD . . . L 6 -5.178 53.475 83.345 1 132.67 ? N7 DAD 4005 C 1 HETATM 23 C C5 DAD . . . L 6 -4.554 54.7 83.542 1 132.67 ? C5 DAD 4005 C 1 HETATM 24 C C6 DAD . . . L 6 -3.496 55.107 84.389 1 132.67 ? C6 DAD 4005 C 1 HETATM 25 N N6 DAD . . . L 6 -2.854 54.286 85.228 1 132.67 ? N6 DAD 4005 C 1 HETATM 26 N N1 DAD . . . L 6 -3.117 56.404 84.342 1 132.67 ? N1 DAD 4005 C 1 HETATM 27 C C2 DAD . . . L 6 -3.757 57.228 83.505 1 132.67 ? C2 DAD 4005 C 1 HETATM 28 N N3 DAD . . . L 6 -4.76 56.968 82.665 1 132.67 ? N3 DAD 4005 C 1 HETATM 29 C C4 DAD . . . L 6 -5.116 55.671 82.731 1 132.67 ? C4 DAD 4005 C 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #