data_1SL5 # _model_server_result.job_id WupmRcBrASxBqZrf3YhBpA _model_server_result.datetime_utc '2024-10-31 07:22:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1sl5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 1SL5 # _exptl.entry_id 1SL5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1SL5 _cell.length_a 72.57 _cell.length_b 55.37 _cell.length_c 29.63 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SL5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG GAL C1 O1 . O3 HO3 . sing 2 ? 2 3 2 FUC NAG C1 O1 . O3 HO3 . sing 3 ? 2 4 2 GAL NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B GAL 1 B 1 GAL C 4 GAL 2 n B NAG 2 B 2 NAG C 2 NAG 2 n B FUC 3 B 3 FUC C 3 FUC 2 n B GAL 4 B 4 GAL C 1 GAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 256 1_555 A SG CYS 18 A CYS 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf2 A SG CYS 35 A CYS 284 1_555 A SG CYS 128 A CYS 377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 107 A CYS 356 1_555 A SG CYS 120 A CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 B O3 GAL . B GAL 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.384 ? covale ? covale2 B O3 NAG . B NAG 2 1_555 B C1 FUC . B FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.392 ? covale ? covale3 B O4 NAG . B NAG 2 1_555 B C1 GAL . B GAL 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.383 ? metalc ? metalc1 A OD1 ASP 71 A ASP 320 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? metalc ? metalc2 A OD2 ASP 71 A ASP 320 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc3 A OE2 GLU 75 A GLU 324 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc4 A OE1 GLU 75 A GLU 324 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc5 A OE1 GLU 98 A GLU 347 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? metalc ? metalc6 A OD1 ASN 100 A ASN 349 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc7 A OD1 ASN 101 A ASN 350 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc8 A O GLU 105 A GLU 354 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc9 A OE1 GLU 105 A GLU 354 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc10 A OD1 ASP 106 A ASP 355 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? metalc ? metalc11 A OD2 ASP 106 A ASP 355 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc12 A OD1 ASN 116 A ASN 365 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc13 A OD1 ASP 117 A ASP 366 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc14 A O ASP 117 A ASP 366 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc15 C CA CA . A CA 401 1_555 F O HOH . A HOH 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc16 D CA CA . A CA 402 1_555 B O3 FUC . B FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc17 D CA CA . A CA 402 1_555 B O4 FUC . B FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc18 E MG MG . A MG 403 1_555 F O HOH . A HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc19 E MG MG . A MG 403 1_555 F O HOH . A HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc20 E MG MG . A MG 403 1_555 F O HOH . A HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc21 E MG MG . A MG 403 1_555 F O HOH . A HOH 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc22 E MG MG . A MG 403 1_555 F O HOH . A HOH 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1SL5 _atom_sites.fract_transf_matrix[1][1] 0.013781 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018062 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.033748 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 401 1 CA CA2 . D 3 CA A 1 402 2 CA CA2 . E 4 MG A 1 403 3 MG MG2 . F 5 HOH A 1 404 1 HOH TIP . F 5 HOH A 2 405 2 HOH TIP . F 5 HOH A 3 406 3 HOH TIP . F 5 HOH A 4 407 4 HOH TIP . F 5 HOH A 5 408 5 HOH TIP . F 5 HOH A 6 409 6 HOH TIP . F 5 HOH A 7 410 7 HOH TIP . F 5 HOH A 8 411 8 HOH TIP . F 5 HOH A 9 412 9 HOH TIP . F 5 HOH A 10 413 10 HOH TIP . F 5 HOH A 11 414 11 HOH TIP . F 5 HOH A 12 415 12 HOH TIP . F 5 HOH A 13 416 13 HOH TIP . F 5 HOH A 14 417 14 HOH TIP . F 5 HOH A 15 418 15 HOH TIP . F 5 HOH A 16 419 16 HOH TIP . F 5 HOH A 17 420 17 HOH TIP . F 5 HOH A 18 421 18 HOH TIP . F 5 HOH A 19 422 19 HOH TIP . F 5 HOH A 20 423 20 HOH TIP . F 5 HOH A 21 424 21 HOH TIP . F 5 HOH A 22 425 22 HOH TIP . F 5 HOH A 23 426 23 HOH TIP . F 5 HOH A 24 427 24 HOH TIP . F 5 HOH A 25 428 25 HOH TIP . F 5 HOH A 26 429 26 HOH TIP . F 5 HOH A 27 430 27 HOH TIP . F 5 HOH A 28 431 28 HOH TIP . F 5 HOH A 29 432 29 HOH TIP . F 5 HOH A 30 433 30 HOH TIP . F 5 HOH A 31 434 31 HOH TIP . F 5 HOH A 32 435 32 HOH TIP . F 5 HOH A 33 436 33 HOH TIP . F 5 HOH A 34 437 34 HOH TIP . F 5 HOH A 35 438 35 HOH TIP . F 5 HOH A 36 439 36 HOH TIP . F 5 HOH A 37 440 37 HOH TIP . F 5 HOH A 38 441 38 HOH TIP . F 5 HOH A 39 442 39 HOH TIP . F 5 HOH A 40 443 40 HOH TIP . F 5 HOH A 41 444 41 HOH TIP . F 5 HOH A 42 445 42 HOH TIP . F 5 HOH A 43 446 43 HOH TIP . F 5 HOH A 44 447 44 HOH TIP . F 5 HOH A 45 448 45 HOH TIP . F 5 HOH A 46 449 46 HOH TIP . F 5 HOH A 47 450 47 HOH TIP . F 5 HOH A 48 451 48 HOH TIP . F 5 HOH A 49 452 49 HOH TIP . F 5 HOH A 50 453 50 HOH TIP . F 5 HOH A 51 454 51 HOH TIP . F 5 HOH A 52 455 52 HOH TIP . F 5 HOH A 53 456 53 HOH TIP . F 5 HOH A 54 457 54 HOH TIP . F 5 HOH A 55 458 55 HOH TIP . F 5 HOH A 56 459 56 HOH TIP . F 5 HOH A 57 460 57 HOH TIP . F 5 HOH A 58 461 58 HOH TIP . F 5 HOH A 59 462 59 HOH TIP . F 5 HOH A 60 463 60 HOH TIP . F 5 HOH A 61 464 61 HOH TIP . F 5 HOH A 62 465 62 HOH TIP . F 5 HOH A 63 466 63 HOH TIP . F 5 HOH A 64 467 64 HOH TIP . F 5 HOH A 65 468 65 HOH TIP . F 5 HOH A 66 469 66 HOH TIP . F 5 HOH A 67 470 67 HOH TIP . F 5 HOH A 68 471 68 HOH TIP . F 5 HOH A 69 472 69 HOH TIP . F 5 HOH A 70 473 70 HOH TIP . F 5 HOH A 71 474 71 HOH TIP . F 5 HOH A 72 475 72 HOH TIP . F 5 HOH A 73 476 73 HOH TIP . F 5 HOH A 74 477 74 HOH TIP . F 5 HOH A 75 478 75 HOH TIP . F 5 HOH A 76 479 76 HOH TIP . F 5 HOH A 77 480 77 HOH TIP . F 5 HOH A 78 481 78 HOH TIP . F 5 HOH A 79 482 79 HOH TIP . F 5 HOH A 80 483 80 HOH TIP . F 5 HOH A 81 484 81 HOH TIP . F 5 HOH A 82 485 82 HOH TIP . F 5 HOH A 83 486 83 HOH TIP . F 5 HOH A 84 487 84 HOH TIP . F 5 HOH A 85 488 85 HOH TIP . F 5 HOH A 86 489 86 HOH TIP . F 5 HOH A 87 490 87 HOH TIP . F 5 HOH A 88 491 88 HOH TIP . F 5 HOH A 89 492 89 HOH TIP . F 5 HOH A 90 493 90 HOH TIP . F 5 HOH A 91 494 91 HOH TIP . F 5 HOH A 92 495 92 HOH TIP . F 5 HOH A 93 496 93 HOH TIP . F 5 HOH A 94 497 94 HOH TIP . F 5 HOH A 95 498 95 HOH TIP . F 5 HOH A 96 499 96 HOH TIP . F 5 HOH A 97 500 97 HOH TIP . F 5 HOH A 98 501 98 HOH TIP . F 5 HOH A 99 502 99 HOH TIP . F 5 HOH A 100 503 100 HOH TIP . F 5 HOH A 101 504 101 HOH TIP . F 5 HOH A 102 505 102 HOH TIP . F 5 HOH A 103 506 103 HOH TIP . F 5 HOH A 104 507 104 HOH TIP . F 5 HOH A 105 508 105 HOH TIP . F 5 HOH A 106 509 106 HOH TIP . F 5 HOH A 107 510 107 HOH TIP . F 5 HOH A 108 511 108 HOH TIP . F 5 HOH A 109 512 109 HOH TIP . F 5 HOH A 110 513 110 HOH TIP . F 5 HOH A 111 514 111 HOH TIP . F 5 HOH A 112 515 112 HOH TIP . F 5 HOH A 113 516 113 HOH TIP . F 5 HOH A 114 517 114 HOH TIP . F 5 HOH A 115 518 115 HOH TIP . F 5 HOH A 116 519 116 HOH TIP . F 5 HOH A 117 520 117 HOH TIP . F 5 HOH A 118 521 118 HOH TIP . F 5 HOH A 119 522 119 HOH TIP . F 5 HOH A 120 523 120 HOH TIP . F 5 HOH A 121 524 121 HOH TIP . F 5 HOH A 122 525 122 HOH TIP . F 5 HOH A 123 526 123 HOH TIP . F 5 HOH A 124 527 124 HOH TIP . F 5 HOH A 125 528 125 HOH TIP . F 5 HOH A 126 529 126 HOH TIP . F 5 HOH A 127 530 127 HOH TIP . F 5 HOH A 128 531 128 HOH TIP . F 5 HOH A 129 532 129 HOH TIP . F 5 HOH A 130 533 130 HOH TIP . F 5 HOH A 131 534 131 HOH TIP . F 5 HOH A 132 535 132 HOH TIP . F 5 HOH A 133 536 133 HOH TIP . F 5 HOH A 134 537 134 HOH TIP . F 5 HOH A 135 538 135 HOH TIP . F 5 HOH A 136 539 136 HOH TIP . F 5 HOH A 137 540 137 HOH TIP . F 5 HOH A 138 541 138 HOH TIP . F 5 HOH A 139 542 139 HOH TIP . F 5 HOH A 140 543 140 HOH TIP . F 5 HOH A 141 544 141 HOH TIP . F 5 HOH A 142 545 142 HOH TIP . F 5 HOH A 143 546 143 HOH TIP . F 5 HOH A 144 547 144 HOH TIP . F 5 HOH A 145 548 145 HOH TIP . F 5 HOH A 146 549 146 HOH TIP . F 5 HOH A 147 550 147 HOH TIP . F 5 HOH A 148 551 148 HOH TIP . F 5 HOH A 149 552 149 HOH TIP . F 5 HOH A 150 553 150 HOH TIP . F 5 HOH A 151 554 151 HOH TIP . F 5 HOH A 152 555 152 HOH TIP . F 5 HOH A 153 556 153 HOH TIP . F 5 HOH A 154 557 154 HOH TIP . F 5 HOH A 155 558 155 HOH TIP . F 5 HOH A 156 559 156 HOH TIP . F 5 HOH A 157 560 157 HOH TIP . F 5 HOH A 158 561 158 HOH TIP . F 5 HOH A 159 562 159 HOH TIP . F 5 HOH A 160 563 160 HOH TIP . F 5 HOH A 161 564 161 HOH TIP . F 5 HOH A 162 565 162 HOH TIP . F 5 HOH A 163 566 163 HOH TIP . F 5 HOH A 164 567 164 HOH TIP . F 5 HOH A 165 568 165 HOH TIP . F 5 HOH A 166 569 166 HOH TIP . F 5 HOH A 167 570 167 HOH TIP . F 5 HOH A 168 571 168 HOH TIP . F 5 HOH A 169 572 169 HOH TIP . F 5 HOH A 170 573 170 HOH TIP . F 5 HOH A 171 574 171 HOH TIP . F 5 HOH A 172 575 172 HOH TIP . F 5 HOH A 173 576 173 HOH TIP . F 5 HOH A 174 577 174 HOH TIP . F 5 HOH A 175 578 175 HOH TIP . F 5 HOH A 176 579 176 HOH TIP . F 5 HOH A 177 580 177 HOH TIP . F 5 HOH A 178 581 178 HOH TIP . F 5 HOH A 179 582 179 HOH TIP . F 5 HOH A 180 583 180 HOH TIP . F 5 HOH A 181 584 181 HOH TIP . F 5 HOH A 182 585 182 HOH TIP . F 5 HOH A 183 586 183 HOH TIP . F 5 HOH A 184 587 184 HOH TIP . F 5 HOH A 185 588 185 HOH TIP . F 5 HOH A 186 589 186 HOH TIP . F 5 HOH A 187 590 187 HOH TIP . F 5 HOH A 188 591 188 HOH TIP . F 5 HOH A 189 592 189 HOH TIP . F 5 HOH A 190 593 190 HOH TIP . F 5 HOH A 191 594 191 HOH TIP . F 5 HOH A 192 595 192 HOH TIP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 32.045 _atom_site.Cartn_y 4.266 _atom_site.Cartn_z 4.93 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 12.52 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #