data_1SM8 # _model_server_result.job_id si-S1mMrwudU8B2QAKG5QA _model_server_result.datetime_utc '2024-11-13 04:45:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1sm8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":3172}' # _entry.id 1SM8 # _exptl.entry_id 1SM8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1SM8 _cell.length_a 57.934 _cell.length_b 77.714 _cell.length_c 91.619 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SM8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D CR CR . A CR 2171 1_555 G O2G DUT . B DUT 2170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.916 ? metalc ? metalc2 F CR CR . B CR 3171 1_555 K O3G DUT . C DUT 3170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc3 J O2G DUT . C DUT 1170 1_555 I CR CR . C CR 1171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 340 n n C C2 TRS sing 341 n n C C3 TRS sing 342 n n C N TRS sing 343 n n C1 O1 TRS sing 344 n n C1 H11 TRS sing 345 n n C1 H12 TRS sing 346 n n C2 O2 TRS sing 347 n n C2 H21 TRS sing 348 n n C2 H22 TRS sing 349 n n C3 O3 TRS sing 350 n n C3 H31 TRS sing 351 n n C3 H32 TRS sing 352 n n N HN1 TRS sing 353 n n N HN2 TRS sing 354 n n N HN3 TRS sing 355 n n O1 HO1 TRS sing 356 n n O2 HO2 TRS sing 357 n n O3 HO3 TRS sing 358 n n # _atom_sites.entry_id 1SM8 _atom_sites.fract_transf_matrix[1][1] 0.017261 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012868 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010915 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 CR A 1 2171 151 CR CR3 . E 3 NO3 A 1 2172 1 NO3 NO3 . F 2 CR B 1 3171 151 CR CR3 . G 4 DUT B 1 2170 150 DUT DUT . H 5 TRS B 1 3172 2 TRS TRS . I 2 CR C 1 1171 151 CR CR3 . J 4 DUT C 1 1170 150 DUT DUT . K 4 DUT C 1 3170 150 DUT DUT . L 6 HOH A 1 2173 7 HOH HOH . L 6 HOH A 2 2174 8 HOH HOH . M 6 HOH C 1 3171 3 HOH HOH . M 6 HOH C 2 3172 4 HOH HOH . M 6 HOH C 3 3173 5 HOH HOH . M 6 HOH C 4 3174 6 HOH HOH . M 6 HOH C 5 3175 9 HOH HOH . M 6 HOH C 6 3176 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . H 5 9.892 -8.069 4.488 1 71.76 ? C TRS 3172 B 1 HETATM 2 C C1 TRS . . . H 5 8.385 -8.129 5.073 1 72.3 ? C1 TRS 3172 B 1 HETATM 3 C C2 TRS . . . H 5 9.853 -8.931 3.283 1 71.34 ? C2 TRS 3172 B 1 HETATM 4 C C3 TRS . . . H 5 10.945 -8.515 5.537 1 71.52 ? C3 TRS 3172 B 1 HETATM 5 N N TRS . . . H 5 10.043 -6.798 4.091 1 71.91 ? N TRS 3172 B 1 HETATM 6 O O1 TRS . . . H 5 7.513 -7.842 3.901 1 74.04 ? O1 TRS 3172 B 1 HETATM 7 O O2 TRS . . . H 5 9.791 -10.239 3.651 1 70.1 ? O2 TRS 3172 B 1 HETATM 8 O O3 TRS . . . H 5 11.01 -7.602 6.694 1 70.73 ? O3 TRS 3172 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #