data_1SMD # _model_server_result.job_id S6CPChZli9Khhvg8nSHeeQ _model_server_result.datetime_utc '2024-11-07 01:26:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1smd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":497}' # _entry.id 1SMD # _exptl.entry_id 1SMD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1SMD _cell.length_a 53.2 _cell.length_b 75.4 _cell.length_c 136.6 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SMD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 28 A CYS 28 1_555 A SG CYS 86 A CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? disulf ? disulf2 A SG CYS 70 A CYS 70 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? disulf ? disulf3 A SG CYS 141 A CYS 141 1_555 A SG CYS 160 A CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? disulf ? disulf4 A SG CYS 378 A CYS 378 1_555 A SG CYS 384 A CYS 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? disulf ? disulf5 A SG CYS 450 A CYS 450 1_555 A SG CYS 462 A CYS 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A C PCA 1 A PCA 1 1_555 A N TYR 2 A TYR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 A OD1 ASN 100 A ASN 100 1_555 B CA CA . A CA 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc2 A O ARG 158 A ARG 158 1_555 B CA CA . A CA 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc3 A OD1 ASP 167 A ASP 167 1_555 B CA CA . A CA 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc4 A OD2 ASP 167 A ASP 167 1_555 B CA CA . A CA 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc5 A O HIS 201 A HIS 201 1_555 B CA CA . A CA 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc6 B CA CA . A CA 497 1_555 D O HOH . A HOH 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc7 B CA CA . A CA 497 1_555 D O HOH . A HOH 535 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc8 B CA CA . A CA 497 1_555 D O HOH . A HOH 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1SMD _atom_sites.fract_transf_matrix[1][1] 0.018797 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013263 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007321 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 497 497 CA CA . C 3 CL A 1 498 498 CL CL . D 4 HOH A 1 499 499 HOH HOH . D 4 HOH A 2 500 500 HOH HOH . D 4 HOH A 3 501 501 HOH HOH . D 4 HOH A 4 502 502 HOH HOH . D 4 HOH A 5 503 503 HOH HOH . D 4 HOH A 6 504 504 HOH HOH . D 4 HOH A 7 505 505 HOH HOH . D 4 HOH A 8 506 506 HOH HOH . D 4 HOH A 9 507 507 HOH HOH . D 4 HOH A 10 508 508 HOH HOH . D 4 HOH A 11 509 509 HOH HOH . D 4 HOH A 12 510 510 HOH HOH . D 4 HOH A 13 511 511 HOH HOH . D 4 HOH A 14 512 512 HOH HOH . D 4 HOH A 15 513 513 HOH HOH . D 4 HOH A 16 514 514 HOH HOH . D 4 HOH A 17 515 515 HOH HOH . D 4 HOH A 18 516 516 HOH HOH . D 4 HOH A 19 517 517 HOH HOH . D 4 HOH A 20 518 518 HOH HOH . D 4 HOH A 21 519 519 HOH HOH . D 4 HOH A 22 520 520 HOH HOH . D 4 HOH A 23 521 521 HOH HOH . D 4 HOH A 24 522 522 HOH HOH . D 4 HOH A 25 523 523 HOH HOH . D 4 HOH A 26 524 524 HOH HOH . D 4 HOH A 27 525 525 HOH HOH . D 4 HOH A 28 526 526 HOH HOH . D 4 HOH A 29 527 527 HOH HOH . D 4 HOH A 30 528 528 HOH HOH . D 4 HOH A 31 529 529 HOH HOH . D 4 HOH A 32 530 530 HOH HOH . D 4 HOH A 33 531 531 HOH HOH . D 4 HOH A 34 532 532 HOH HOH . D 4 HOH A 35 533 533 HOH HOH . D 4 HOH A 36 534 534 HOH HOH . D 4 HOH A 37 535 535 HOH HOH . D 4 HOH A 38 536 536 HOH HOH . D 4 HOH A 39 537 537 HOH HOH . D 4 HOH A 40 538 538 HOH HOH . D 4 HOH A 41 539 539 HOH HOH . D 4 HOH A 42 540 540 HOH HOH . D 4 HOH A 43 541 541 HOH HOH . D 4 HOH A 44 542 542 HOH HOH . D 4 HOH A 45 543 543 HOH HOH . D 4 HOH A 46 544 544 HOH HOH . D 4 HOH A 47 545 545 HOH HOH . D 4 HOH A 48 546 546 HOH HOH . D 4 HOH A 49 547 547 HOH HOH . D 4 HOH A 50 548 548 HOH HOH . D 4 HOH A 51 549 549 HOH HOH . D 4 HOH A 52 550 550 HOH HOH . D 4 HOH A 53 551 551 HOH HOH . D 4 HOH A 54 552 552 HOH HOH . D 4 HOH A 55 553 553 HOH HOH . D 4 HOH A 56 554 554 HOH HOH . D 4 HOH A 57 555 555 HOH HOH . D 4 HOH A 58 556 556 HOH HOH . D 4 HOH A 59 557 557 HOH HOH . D 4 HOH A 60 558 558 HOH HOH . D 4 HOH A 61 559 559 HOH HOH . D 4 HOH A 62 560 560 HOH HOH . D 4 HOH A 63 561 561 HOH HOH . D 4 HOH A 64 562 562 HOH HOH . D 4 HOH A 65 563 563 HOH HOH . D 4 HOH A 66 564 564 HOH HOH . D 4 HOH A 67 565 565 HOH HOH . D 4 HOH A 68 566 566 HOH HOH . D 4 HOH A 69 567 567 HOH HOH . D 4 HOH A 70 568 568 HOH HOH . D 4 HOH A 71 569 569 HOH HOH . D 4 HOH A 72 570 570 HOH HOH . D 4 HOH A 73 571 571 HOH HOH . D 4 HOH A 74 572 572 HOH HOH . D 4 HOH A 75 573 573 HOH HOH . D 4 HOH A 76 574 574 HOH HOH . D 4 HOH A 77 575 575 HOH HOH . D 4 HOH A 78 576 576 HOH HOH . D 4 HOH A 79 577 577 HOH HOH . D 4 HOH A 80 578 578 HOH HOH . D 4 HOH A 81 579 579 HOH HOH . D 4 HOH A 82 580 580 HOH HOH . D 4 HOH A 83 581 581 HOH HOH . D 4 HOH A 84 582 582 HOH HOH . D 4 HOH A 85 583 583 HOH HOH . D 4 HOH A 86 584 584 HOH HOH . D 4 HOH A 87 585 585 HOH HOH . D 4 HOH A 88 586 586 HOH HOH . D 4 HOH A 89 587 587 HOH HOH . D 4 HOH A 90 588 588 HOH HOH . D 4 HOH A 91 589 589 HOH HOH . D 4 HOH A 92 590 590 HOH HOH . D 4 HOH A 93 591 591 HOH HOH . D 4 HOH A 94 592 592 HOH HOH . D 4 HOH A 95 593 593 HOH HOH . D 4 HOH A 96 594 594 HOH HOH . D 4 HOH A 97 595 595 HOH HOH . D 4 HOH A 98 596 596 HOH HOH . D 4 HOH A 99 597 597 HOH HOH . D 4 HOH A 100 598 598 HOH HOH . D 4 HOH A 101 599 599 HOH HOH . D 4 HOH A 102 600 600 HOH HOH . D 4 HOH A 103 601 601 HOH HOH . D 4 HOH A 104 602 602 HOH HOH . D 4 HOH A 105 603 603 HOH HOH . D 4 HOH A 106 604 604 HOH HOH . D 4 HOH A 107 605 605 HOH HOH . D 4 HOH A 108 606 606 HOH HOH . D 4 HOH A 109 607 607 HOH HOH . D 4 HOH A 110 608 608 HOH HOH . D 4 HOH A 111 609 609 HOH HOH . D 4 HOH A 112 610 610 HOH HOH . D 4 HOH A 113 611 611 HOH HOH . D 4 HOH A 114 612 612 HOH HOH . D 4 HOH A 115 613 613 HOH HOH . D 4 HOH A 116 614 614 HOH HOH . D 4 HOH A 117 615 615 HOH HOH . D 4 HOH A 118 616 616 HOH HOH . D 4 HOH A 119 617 617 HOH HOH . D 4 HOH A 120 618 618 HOH HOH . D 4 HOH A 121 619 619 HOH HOH . D 4 HOH A 122 620 620 HOH HOH . D 4 HOH A 123 621 621 HOH HOH . D 4 HOH A 124 622 622 HOH HOH . D 4 HOH A 125 623 623 HOH HOH . D 4 HOH A 126 624 624 HOH HOH . D 4 HOH A 127 625 625 HOH HOH . D 4 HOH A 128 626 626 HOH HOH . D 4 HOH A 129 627 627 HOH HOH . D 4 HOH A 130 628 628 HOH HOH . D 4 HOH A 131 629 629 HOH HOH . D 4 HOH A 132 630 630 HOH HOH . D 4 HOH A 133 631 631 HOH HOH . D 4 HOH A 134 632 632 HOH HOH . D 4 HOH A 135 633 633 HOH HOH . D 4 HOH A 136 634 634 HOH HOH . D 4 HOH A 137 635 635 HOH HOH . D 4 HOH A 138 636 636 HOH HOH . D 4 HOH A 139 637 637 HOH HOH . D 4 HOH A 140 638 638 HOH HOH . D 4 HOH A 141 639 639 HOH HOH . D 4 HOH A 142 640 640 HOH HOH . D 4 HOH A 143 641 641 HOH HOH . D 4 HOH A 144 642 642 HOH HOH . D 4 HOH A 145 643 643 HOH HOH . D 4 HOH A 146 644 644 HOH HOH . D 4 HOH A 147 645 645 HOH HOH . D 4 HOH A 148 646 646 HOH HOH . D 4 HOH A 149 647 647 HOH HOH . D 4 HOH A 150 648 648 HOH HOH . D 4 HOH A 151 649 649 HOH HOH . D 4 HOH A 152 650 650 HOH HOH . D 4 HOH A 153 651 651 HOH HOH . D 4 HOH A 154 652 652 HOH HOH . D 4 HOH A 155 653 653 HOH HOH . D 4 HOH A 156 654 654 HOH HOH . D 4 HOH A 157 655 655 HOH HOH . D 4 HOH A 158 656 656 HOH HOH . D 4 HOH A 159 657 657 HOH HOH . D 4 HOH A 160 658 658 HOH HOH . D 4 HOH A 161 659 659 HOH HOH . D 4 HOH A 162 660 660 HOH HOH . D 4 HOH A 163 661 661 HOH HOH . D 4 HOH A 164 662 662 HOH HOH . D 4 HOH A 165 663 663 HOH HOH . D 4 HOH A 166 664 664 HOH HOH . D 4 HOH A 167 665 665 HOH HOH . D 4 HOH A 168 666 666 HOH HOH . D 4 HOH A 169 667 667 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 8.677 _atom_site.Cartn_y 38.44 _atom_site.Cartn_z 9.903 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 22.15 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 497 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #