data_1SMF # _model_server_result.job_id rDXiyGIrP7hL6OQieIAg8w _model_server_result.datetime_utc '2025-03-06 03:37:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1smf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":0}' # _entry.id 1SMF # _exptl.entry_id 1SMF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1SMF _cell.length_a 63.23 _cell.length_b 63.62 _cell.length_c 69.54 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SMF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 E CYS 22 1_555 A SG CYS 137 E CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf2 A SG CYS 25 E CYS 42 1_555 A SG CYS 41 E CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 109 E CYS 128 1_555 A SG CYS 210 E CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 A SG CYS 116 E CYS 136 1_555 A SG CYS 183 E CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 A SG CYS 148 E CYS 168 1_555 A SG CYS 162 E CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf6 A SG CYS 173 E CYS 191 1_555 A SG CYS 197 E CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf7 B SG CYS 9 I CYS 9 1_555 B SG CYS 17 I CYS 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 C CA CA . E CA 0 1_555 A OE1 GLU 52 E GLU 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc2 C CA CA . E CA 0 1_555 A O ASN 54 E ASN 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc3 C CA CA . E CA 0 1_555 A O VAL 57 E VAL 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc4 C CA CA . E CA 0 1_555 A OE2 GLU 62 E GLU 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc5 C CA CA . E CA 0 1_555 D O HOH . E HOH 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc6 C CA CA . E CA 0 1_555 D O HOH . E HOH 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1SMF _atom_sites.fract_transf_matrix[1][1] 0.015815 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015718 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01438 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA E 1 0 0 CA CA . D 4 HOH E 1 246 1 HOH HOH . D 4 HOH E 2 247 2 HOH HOH . D 4 HOH E 3 248 3 HOH HOH . D 4 HOH E 4 249 4 HOH HOH . D 4 HOH E 5 250 5 HOH HOH . D 4 HOH E 6 251 6 HOH HOH . D 4 HOH E 7 252 7 HOH HOH . D 4 HOH E 8 253 8 HOH HOH . D 4 HOH E 9 254 10 HOH HOH . D 4 HOH E 10 255 11 HOH HOH . D 4 HOH E 11 256 12 HOH HOH . D 4 HOH E 12 257 13 HOH HOH . D 4 HOH E 13 258 14 HOH HOH . D 4 HOH E 14 259 15 HOH HOH . D 4 HOH E 15 260 16 HOH HOH . D 4 HOH E 16 261 17 HOH HOH . D 4 HOH E 17 262 18 HOH HOH . D 4 HOH E 18 263 19 HOH HOH . D 4 HOH E 19 264 20 HOH HOH . D 4 HOH E 20 265 21 HOH HOH . D 4 HOH E 21 266 22 HOH HOH . D 4 HOH E 22 267 23 HOH HOH . D 4 HOH E 23 268 24 HOH HOH . D 4 HOH E 24 269 25 HOH HOH . D 4 HOH E 25 270 26 HOH HOH . D 4 HOH E 26 271 27 HOH HOH . D 4 HOH E 27 272 28 HOH HOH . D 4 HOH E 28 273 29 HOH HOH . D 4 HOH E 29 274 30 HOH HOH . D 4 HOH E 30 275 31 HOH HOH . D 4 HOH E 31 276 32 HOH HOH . D 4 HOH E 32 277 33 HOH HOH . D 4 HOH E 33 278 34 HOH HOH . D 4 HOH E 34 279 35 HOH HOH . D 4 HOH E 35 280 36 HOH HOH . D 4 HOH E 36 281 37 HOH HOH . D 4 HOH E 37 282 38 HOH HOH . D 4 HOH E 38 283 39 HOH HOH . D 4 HOH E 39 284 40 HOH HOH . D 4 HOH E 40 285 42 HOH HOH . D 4 HOH E 41 286 43 HOH HOH . D 4 HOH E 42 287 44 HOH HOH . D 4 HOH E 43 288 45 HOH HOH . D 4 HOH E 44 289 46 HOH HOH . D 4 HOH E 45 290 47 HOH HOH . D 4 HOH E 46 291 48 HOH HOH . D 4 HOH E 47 292 49 HOH HOH . D 4 HOH E 48 293 50 HOH HOH . D 4 HOH E 49 294 51 HOH HOH . D 4 HOH E 50 295 52 HOH HOH . D 4 HOH E 51 296 53 HOH HOH . D 4 HOH E 52 297 54 HOH HOH . D 4 HOH E 53 298 55 HOH HOH . D 4 HOH E 54 299 56 HOH HOH . D 4 HOH E 55 300 57 HOH HOH . D 4 HOH E 56 301 58 HOH HOH . D 4 HOH E 57 302 59 HOH HOH . D 4 HOH E 58 303 60 HOH HOH . D 4 HOH E 59 304 61 HOH HOH . D 4 HOH E 60 305 62 HOH HOH . D 4 HOH E 61 306 63 HOH HOH . D 4 HOH E 62 307 64 HOH HOH . D 4 HOH E 63 308 65 HOH HOH . D 4 HOH E 64 309 66 HOH HOH . D 4 HOH E 65 310 67 HOH HOH . D 4 HOH E 66 311 68 HOH HOH . D 4 HOH E 67 312 72 HOH HOH . D 4 HOH E 68 313 73 HOH HOH . D 4 HOH E 69 314 74 HOH HOH . D 4 HOH E 70 315 75 HOH HOH . D 4 HOH E 71 316 77 HOH HOH . D 4 HOH E 72 317 78 HOH HOH . D 4 HOH E 73 318 79 HOH HOH . D 4 HOH E 74 319 80 HOH HOH . D 4 HOH E 75 320 81 HOH HOH . D 4 HOH E 76 321 82 HOH HOH . D 4 HOH E 77 322 83 HOH HOH . D 4 HOH E 78 323 84 HOH HOH . D 4 HOH E 79 324 85 HOH HOH . D 4 HOH E 80 325 86 HOH HOH . D 4 HOH E 81 326 87 HOH HOH . E 4 HOH I 1 23 9 HOH HOH . E 4 HOH I 2 24 70 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 22.876 _atom_site.Cartn_y -16.268 _atom_site.Cartn_z 87.489 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 9.94 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 0 _atom_site.auth_asym_id E _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #