data_1SMH # _model_server_result.job_id AoGyQRzo6dhRoArN0LhUkw _model_server_result.datetime_utc '2024-11-23 08:56:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1smh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1000}' # _entry.id 1SMH # _exptl.entry_id 1SMH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 321.41 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-OCTANOYL-N-METHYLGLUCAMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1SMH _cell.length_a 48.78 _cell.length_b 79.431 _cell.length_c 117.82 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SMH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TRP 196 A TRP 196 1_555 A N TPO 197 A TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C TPO 197 A TPO 197 1_555 A N LEU 198 A LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 A C VAL 337 A VAL 337 1_555 A N SEP 338 A SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 A C SEP 338 A SEP 338 1_555 A N ILE 339 A ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? # _chem_comp.formula 'C15 H31 N O6' _chem_comp.formula_weight 321.41 _chem_comp.id MG8 _chem_comp.mon_nstd_flag . _chem_comp.name N-OCTANOYL-N-METHYLGLUCAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'MEGA 8;N-(D-GLUCITYL)-N-METHYLOCTANAMIDE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MG8 sing 252 n n C1 H11A MG8 sing 253 n n C1 H12A MG8 sing 254 n n C1 H13A MG8 sing 255 n n C2 C3 MG8 sing 256 n n C2 H21 MG8 sing 257 n n C2 H22 MG8 sing 258 n n C3 C4 MG8 sing 259 n n C3 H31 MG8 sing 260 n n C3 H32 MG8 sing 261 n n C4 C5 MG8 sing 262 n n C4 H41 MG8 sing 263 n n C4 H42 MG8 sing 264 n n C5 C6 MG8 sing 265 n n C5 H51 MG8 sing 266 n n C5 H52 MG8 sing 267 n n C6 C7 MG8 sing 268 n n C6 H61 MG8 sing 269 n n C6 H62 MG8 sing 270 n n C7 C8 MG8 sing 271 n n C7 H71 MG8 sing 272 n n C7 H72 MG8 sing 273 n n C8 O8 MG8 doub 274 n n C8 N MG8 sing 275 n n N C9 MG8 sing 276 n n N C15 MG8 sing 277 n n C9 C10 MG8 sing 278 n n C9 H91 MG8 sing 279 n n C9 H92 MG8 sing 280 n n C10 O10 MG8 sing 281 n n C10 C11 MG8 sing 282 n n C10 H10 MG8 sing 283 n n O10 HO10 MG8 sing 284 n n C11 O11 MG8 sing 285 n n C11 C12 MG8 sing 286 n n C11 H11 MG8 sing 287 n n O11 HO11 MG8 sing 288 n n C12 O12 MG8 sing 289 n n C12 C13 MG8 sing 290 n n C12 H12 MG8 sing 291 n n O12 HO12 MG8 sing 292 n n C13 O13 MG8 sing 293 n n C13 C14 MG8 sing 294 n n C13 H13 MG8 sing 295 n n O13 HO13 MG8 sing 296 n n C14 O14 MG8 sing 297 n n C14 H141 MG8 sing 298 n n C14 H142 MG8 sing 299 n n O14 HO14 MG8 sing 300 n n C15 H151 MG8 sing 301 n n C15 H152 MG8 sing 302 n n C15 H153 MG8 sing 303 n n # _atom_sites.entry_id 1SMH _atom_sites.fract_transf_matrix[1][1] 0.0205 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01259 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008488 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 BU3 A 1 901 901 BU3 BU3 . D 3 BU3 A 1 903 903 BU3 BU3 . E 3 BU3 A 1 904 904 BU3 BU3 . F 3 BU3 A 1 905 905 BU3 BU3 . G 3 BU3 A 1 906 906 BU3 BU3 . H 4 MG8 A 1 1000 1000 MG8 MG8 . I 3 BU3 B 1 902 902 BU3 BU3 . J 5 HOH A 1 1001 2 HOH HOH . J 5 HOH A 2 1002 4 HOH HOH . J 5 HOH A 3 1003 5 HOH HOH . J 5 HOH A 4 1004 6 HOH HOH . J 5 HOH A 5 1005 8 HOH HOH . J 5 HOH A 6 1006 9 HOH HOH . J 5 HOH A 7 1007 11 HOH HOH . J 5 HOH A 8 1008 13 HOH HOH . J 5 HOH A 9 1009 15 HOH HOH . J 5 HOH A 10 1010 16 HOH HOH . J 5 HOH A 11 1011 18 HOH HOH . J 5 HOH A 12 1012 20 HOH HOH . J 5 HOH A 13 1013 22 HOH HOH . J 5 HOH A 14 1014 25 HOH HOH . J 5 HOH A 15 1015 32 HOH HOH . J 5 HOH A 16 1016 34 HOH HOH . J 5 HOH A 17 1017 36 HOH HOH . J 5 HOH A 18 1018 37 HOH HOH . J 5 HOH A 19 1019 39 HOH HOH . J 5 HOH A 20 1020 43 HOH HOH . J 5 HOH A 21 1021 45 HOH HOH . J 5 HOH A 22 1022 48 HOH HOH . J 5 HOH A 23 1023 50 HOH HOH . J 5 HOH A 24 1024 52 HOH HOH . J 5 HOH A 25 1025 53 HOH HOH . J 5 HOH A 26 1026 54 HOH HOH . J 5 HOH A 27 1027 55 HOH HOH . J 5 HOH A 28 1028 57 HOH HOH . J 5 HOH A 29 1029 59 HOH HOH . J 5 HOH A 30 1030 105 HOH HOH . J 5 HOH A 31 1031 106 HOH HOH . J 5 HOH A 32 1032 108 HOH HOH . J 5 HOH A 33 1033 109 HOH HOH . J 5 HOH A 34 1034 119 HOH HOH . J 5 HOH A 35 1035 127 HOH HOH . J 5 HOH A 36 1036 134 HOH HOH . J 5 HOH A 37 1037 136 HOH HOH . J 5 HOH A 38 1038 162 HOH HOH . J 5 HOH A 39 1039 281 HOH HOH . J 5 HOH A 40 1040 225 HOH HOH . J 5 HOH A 41 1041 232 HOH HOH . J 5 HOH A 42 1042 239 HOH HOH . J 5 HOH A 43 1043 241 HOH HOH . J 5 HOH A 44 1044 242 HOH HOH . J 5 HOH A 45 1045 259 HOH HOH . J 5 HOH A 46 1046 265 HOH HOH . J 5 HOH A 47 1047 266 HOH HOH . J 5 HOH A 48 1048 294 HOH HOH . J 5 HOH A 49 1049 216 HOH HOH . J 5 HOH A 50 1050 219 HOH HOH . J 5 HOH A 51 1051 233 HOH HOH . J 5 HOH A 52 1052 439 HOH HOH . J 5 HOH A 53 1053 445 HOH HOH . J 5 HOH A 54 1054 449 HOH HOH . J 5 HOH A 55 1055 450 HOH HOH . J 5 HOH A 56 1056 515 HOH HOH . J 5 HOH A 57 1057 522 HOH HOH . J 5 HOH A 58 1058 523 HOH HOH . J 5 HOH A 59 1059 528 HOH HOH . J 5 HOH A 60 1060 529 HOH HOH . J 5 HOH A 61 1061 536 HOH HOH . J 5 HOH A 62 1062 545 HOH HOH . J 5 HOH A 63 1063 550 HOH HOH . J 5 HOH A 64 1064 556 HOH HOH . J 5 HOH A 65 1065 566 HOH HOH . J 5 HOH A 66 1066 577 HOH HOH . J 5 HOH A 67 1067 600 HOH HOH . J 5 HOH A 68 1068 588 HOH HOH . J 5 HOH A 69 1069 579 HOH HOH . J 5 HOH A 70 1070 617 HOH HOH . J 5 HOH A 71 1071 636 HOH HOH . J 5 HOH A 72 1072 639 HOH HOH . J 5 HOH A 73 1073 643 HOH HOH . J 5 HOH A 74 1074 647 HOH HOH . J 5 HOH A 75 1075 661 HOH HOH . J 5 HOH A 76 1076 662 HOH HOH . J 5 HOH A 77 1077 710 HOH HOH . J 5 HOH A 78 1078 711 HOH HOH . J 5 HOH A 79 1079 712 HOH HOH . J 5 HOH A 80 1080 713 HOH HOH . J 5 HOH A 81 1081 715 HOH HOH . J 5 HOH A 82 1082 718 HOH HOH . J 5 HOH A 83 1083 719 HOH HOH . J 5 HOH A 84 1084 720 HOH HOH . J 5 HOH A 85 1085 721 HOH HOH . J 5 HOH A 86 1086 723 HOH HOH . J 5 HOH A 87 1087 724 HOH HOH . J 5 HOH A 88 1088 725 HOH HOH . J 5 HOH A 89 1089 726 HOH HOH . J 5 HOH A 90 1090 727 HOH HOH . J 5 HOH A 91 1091 729 HOH HOH . J 5 HOH A 92 1092 731 HOH HOH . J 5 HOH A 93 1093 732 HOH HOH . J 5 HOH A 94 1094 733 HOH HOH . J 5 HOH A 95 1095 734 HOH HOH . J 5 HOH A 96 1096 735 HOH HOH . J 5 HOH A 97 1097 737 HOH HOH . J 5 HOH A 98 1098 736 HOH HOH . J 5 HOH A 99 1099 739 HOH HOH . J 5 HOH A 100 1100 740 HOH HOH . J 5 HOH A 101 1101 741 HOH HOH . J 5 HOH A 102 1102 742 HOH HOH . J 5 HOH A 103 1103 743 HOH HOH . J 5 HOH A 104 1104 745 HOH HOH . J 5 HOH A 105 1105 746 HOH HOH . J 5 HOH A 106 1106 750 HOH HOH . J 5 HOH A 107 1107 751 HOH HOH . J 5 HOH A 108 1108 752 HOH HOH . J 5 HOH A 109 1109 753 HOH HOH . J 5 HOH A 110 1110 754 HOH HOH . J 5 HOH A 111 1111 757 HOH HOH . J 5 HOH A 112 1112 758 HOH HOH . J 5 HOH A 113 1113 760 HOH HOH . J 5 HOH A 114 1114 761 HOH HOH . J 5 HOH A 115 1115 762 HOH HOH . J 5 HOH A 116 1116 763 HOH HOH . J 5 HOH A 117 1117 764 HOH HOH . J 5 HOH A 118 1118 765 HOH HOH . J 5 HOH A 119 1119 767 HOH HOH . J 5 HOH A 120 1120 768 HOH HOH . J 5 HOH A 121 1121 769 HOH HOH . J 5 HOH A 122 1122 770 HOH HOH . J 5 HOH A 123 1123 772 HOH HOH . J 5 HOH A 124 1124 774 HOH HOH . J 5 HOH A 125 1125 775 HOH HOH . J 5 HOH A 126 1126 777 HOH HOH . J 5 HOH A 127 1127 782 HOH HOH . J 5 HOH A 128 1128 784 HOH HOH . J 5 HOH A 129 1129 786 HOH HOH . J 5 HOH A 130 1130 789 HOH HOH . J 5 HOH A 131 1131 790 HOH HOH . J 5 HOH A 132 1132 792 HOH HOH . J 5 HOH A 133 1133 793 HOH HOH . J 5 HOH A 134 1134 795 HOH HOH . J 5 HOH A 135 1135 796 HOH HOH . J 5 HOH A 136 1136 797 HOH HOH . J 5 HOH A 137 1137 798 HOH HOH . J 5 HOH A 138 1138 799 HOH HOH . J 5 HOH A 139 1139 804 HOH HOH . J 5 HOH A 140 1140 807 HOH HOH . J 5 HOH A 141 1141 809 HOH HOH . J 5 HOH A 142 1142 810 HOH HOH . J 5 HOH A 143 1143 813 HOH HOH . J 5 HOH A 144 1144 816 HOH HOH . J 5 HOH A 145 1145 817 HOH HOH . J 5 HOH A 146 1146 819 HOH HOH . J 5 HOH A 147 1147 821 HOH HOH . J 5 HOH A 148 1148 848 HOH HOH . J 5 HOH A 149 1149 852 HOH HOH . J 5 HOH A 150 1150 853 HOH HOH . J 5 HOH A 151 1151 855 HOH HOH . J 5 HOH A 152 1152 857 HOH HOH . K 5 HOH B 1 903 1 HOH HOH . K 5 HOH B 2 904 14 HOH HOH . K 5 HOH B 3 905 19 HOH HOH . K 5 HOH B 4 906 21 HOH HOH . K 5 HOH B 5 907 101 HOH HOH . K 5 HOH B 6 908 116 HOH HOH . K 5 HOH B 7 909 120 HOH HOH . K 5 HOH B 8 910 149 HOH HOH . K 5 HOH B 9 911 300 HOH HOH . K 5 HOH B 10 912 507 HOH HOH . K 5 HOH B 11 913 526 HOH HOH . K 5 HOH B 12 914 582 HOH HOH . K 5 HOH B 13 915 595 HOH HOH . K 5 HOH B 14 916 578 HOH HOH . K 5 HOH B 15 917 655 HOH HOH . K 5 HOH B 16 918 658 HOH HOH . K 5 HOH B 17 919 722 HOH HOH . K 5 HOH B 18 920 730 HOH HOH . K 5 HOH B 19 921 773 HOH HOH . K 5 HOH B 20 922 805 HOH HOH . K 5 HOH B 21 923 806 HOH HOH . K 5 HOH B 22 924 844 HOH HOH . K 5 HOH B 23 925 846 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MG8 . . . H 4 20.949 27.508 30.158 1 39.15 ? C1 MG8 1000 A 1 HETATM 2 C C2 MG8 . . . H 4 22.422 27.1 30.252 1 46.22 ? C2 MG8 1000 A 1 HETATM 3 C C3 MG8 . . . H 4 23.356 28.266 30.639 1 46.43 ? C3 MG8 1000 A 1 HETATM 4 C C4 MG8 . . . H 4 24.485 27.682 31.483 1 50.34 ? C4 MG8 1000 A 1 HETATM 5 C C5 MG8 . . . H 4 25.871 28.121 31.02 1 55.44 ? C5 MG8 1000 A 1 HETATM 6 C C6 MG8 . . . H 4 26.85 27.874 32.177 1 59.26 ? C6 MG8 1000 A 1 HETATM 7 C C7 MG8 . . . H 4 28.117 27.131 31.727 1 61 ? C7 MG8 1000 A 1 HETATM 8 C C8 MG8 . . . H 4 29.264 27.455 32.655 1 62.5 ? C8 MG8 1000 A 1 HETATM 9 O O8 MG8 . . . H 4 30.269 28.075 32.279 1 62.75 ? O8 MG8 1000 A 1 HETATM 10 N N MG8 . . . H 4 29.164 27.029 33.981 1 61.8 ? N MG8 1000 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 10 #