data_1SMJ # _model_server_result.job_id w4kYvC1MvaDbhu8s_kovhA _model_server_result.datetime_utc '2024-11-28 03:32:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1smj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":472}' # _entry.id 1SMJ # _exptl.entry_id 1SMJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1SMJ _cell.length_a 107.312 _cell.length_b 166.886 _cell.length_c 224.937 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SMJ _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F 1 1 B,G,H 2 1 C,I,J 3 1 D,K,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OE2 GLU 264 A GLU 264 1_555 E NC HEM . A HEM 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.514 ? metalc ? metalc1 A OE2 GLU 264 A GLU 264 1_555 E FE HEM . A HEM 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.754 ? metalc ? metalc2 A SG CYS 400 A CYS 400 1_555 E FE HEM . A HEM 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc3 B OE2 GLU 264 B GLU 264 1_555 G FE HEM . B HEM 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc4 B SG CYS 400 B CYS 400 1_555 G FE HEM . B HEM 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc5 C OE2 GLU 264 C GLU 264 1_555 I FE HEM . C HEM 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc6 C SG CYS 400 C CYS 400 1_555 I FE HEM . C HEM 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.801 ? metalc ? metalc7 D OE2 GLU 264 D GLU 264 1_555 K FE HEM . D HEM 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc8 D SG CYS 400 D CYS 400 1_555 K FE HEM . D HEM 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 1SMJ _atom_sites.fract_transf_matrix[1][1] 0.009319 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005992 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004446 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HEM A 1 472 460 HEM HEM . F 3 PAM A 1 1465 1465 PAM PAM . G 2 HEM B 1 472 460 HEM HEM . H 3 PAM B 1 2465 2465 PAM PAM . I 2 HEM C 1 472 460 HEM HEM . J 3 PAM C 1 3465 3465 PAM PAM . K 2 HEM D 1 472 460 HEM HEM . L 3 PAM D 1 4465 4465 PAM PAM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . E 2 45.217 76.58 28.687 1 26.51 ? CHA HEM 472 A 1 HETATM 2 C CHB HEM . . . E 2 47.498 74.2 32.25 1 28.58 ? CHB HEM 472 A 1 HETATM 3 C CHC HEM . . . E 2 51.507 74.125 29.616 1 30.27 ? CHC HEM 472 A 1 HETATM 4 C CHD HEM . . . E 2 49.317 76.904 26.462 1 27.26 ? CHD HEM 472 A 1 HETATM 5 C C1A HEM . . . E 2 45.578 75.928 29.821 1 26.57 ? C1A HEM 472 A 1 HETATM 6 C C2A HEM . . . E 2 44.647 75.86 30.948 1 26.28 ? C2A HEM 472 A 1 HETATM 7 C C3A HEM . . . E 2 45.262 75.213 31.965 1 26.26 ? C3A HEM 472 A 1 HETATM 8 C C4A HEM . . . E 2 46.611 74.893 31.462 1 27.85 ? C4A HEM 472 A 1 HETATM 9 C CMA HEM . . . E 2 44.692 74.807 33.352 1 18.71 ? CMA HEM 472 A 1 HETATM 10 C CAA HEM . . . E 2 43.223 76.413 30.912 1 22.95 ? CAA HEM 472 A 1 HETATM 11 C CBA HEM . . . E 2 43.137 77.669 31.74 1 21.82 ? CBA HEM 472 A 1 HETATM 12 C CGA HEM . . . E 2 41.651 77.912 31.742 1 26.19 ? CGA HEM 472 A 1 HETATM 13 O O1A HEM . . . E 2 41.019 76.936 31.254 1 34.13 ? O1A HEM 472 A 1 HETATM 14 O O2A HEM . . . E 2 41.081 78.979 32.151 1 26.61 ? O2A HEM 472 A 1 HETATM 15 C C1B HEM . . . E 2 48.794 73.998 31.849 1 32.24 ? C1B HEM 472 A 1 HETATM 16 C C2B HEM . . . E 2 49.794 73.403 32.678 1 28.64 ? C2B HEM 472 A 1 HETATM 17 C C3B HEM . . . E 2 50.918 73.381 31.952 1 31.98 ? C3B HEM 472 A 1 HETATM 18 C C4B HEM . . . E 2 50.633 73.952 30.652 1 31.75 ? C4B HEM 472 A 1 HETATM 19 C CMB HEM . . . E 2 49.409 72.934 34.1 1 32.58 ? CMB HEM 472 A 1 HETATM 20 C CAB HEM . . . E 2 52.31 72.868 32.354 1 32.3 ? CAB HEM 472 A 1 HETATM 21 C CBB HEM . . . E 2 52.144 71.75 33.027 1 39.69 ? CBB HEM 472 A 1 HETATM 22 C C1C HEM . . . E 2 51.191 74.82 28.521 1 28.33 ? C1C HEM 472 A 1 HETATM 23 C C2C HEM . . . E 2 51.99 74.833 27.316 1 27.61 ? C2C HEM 472 A 1 HETATM 24 C C3C HEM . . . E 2 51.445 75.765 26.506 1 26.77 ? C3C HEM 472 A 1 HETATM 25 C C4C HEM . . . E 2 50.188 76.138 27.101 1 26.04 ? C4C HEM 472 A 1 HETATM 26 C CMC HEM . . . E 2 53.431 74.42 27.247 1 19.69 ? CMC HEM 472 A 1 HETATM 27 C CAC HEM . . . E 2 51.97 76.174 25.135 1 25.05 ? CAC HEM 472 A 1 HETATM 28 C CBC HEM . . . E 2 53.286 76.054 24.769 1 22.33 ? CBC HEM 472 A 1 HETATM 29 C C1D HEM . . . E 2 48.004 77.12 26.664 1 26.33 ? C1D HEM 472 A 1 HETATM 30 C C2D HEM . . . E 2 47.097 77.882 25.841 1 26.84 ? C2D HEM 472 A 1 HETATM 31 C C3D HEM . . . E 2 45.822 77.779 26.552 1 31.25 ? C3D HEM 472 A 1 HETATM 32 C C4D HEM . . . E 2 46.112 76.988 27.733 1 30.65 ? C4D HEM 472 A 1 HETATM 33 C CMD HEM . . . E 2 47.222 78.673 24.519 1 26.07 ? CMD HEM 472 A 1 HETATM 34 C CAD HEM . . . E 2 44.514 78.45 26.059 1 32.33 ? CAD HEM 472 A 1 HETATM 35 C CBD HEM . . . E 2 43.824 77.644 24.97 1 36.29 ? CBD HEM 472 A 1 HETATM 36 C CGD HEM . . . E 2 42.379 78.011 25.171 1 40.92 ? CGD HEM 472 A 1 HETATM 37 O O1D HEM . . . E 2 41.848 78.329 24.075 1 38.01 ? O1D HEM 472 A 1 HETATM 38 O O2D HEM . . . E 2 41.807 77.949 26.352 1 43.23 ? O2D HEM 472 A 1 HETATM 39 N NA HEM . . . E 2 46.789 75.345 30.146 1 21.87 ? NA HEM 472 A 1 HETATM 40 N NB HEM . . . E 2 49.337 74.327 30.616 1 31.69 ? NB HEM 472 A 1 HETATM 41 N NC HEM . . . E 2 50.036 75.533 28.322 1 24.3 ? NC HEM 472 A 1 HETATM 42 N ND HEM . . . E 2 47.422 76.632 27.743 1 28.24 ? ND HEM 472 A 1 HETATM 43 FE FE HEM . . . E 2 48.346 75.403 29.24 1 36.25 ? FE HEM 472 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #