data_1SMJ
#
_model_server_result.job_id            6hn7IV0pT39uphPsm0Rz1Q 
_model_server_result.datetime_utc      '2024-11-06 09:33:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1smj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":472}' 
#
_entry.id    1SMJ 
#
_exptl.entry_id    1SMJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1SMJ 
_cell.length_a            107.312 
_cell.length_b            166.886 
_cell.length_c            224.937 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1SMJ 
_symmetry.cell_setting             orthorhombic 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F 1 1 
B,G,H 2 1 
C,I,J 3 1 
D,K,L 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OE2 GLU 264 A GLU 264 1_555 E NC HEM . A HEM 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.514 ? 
metalc ? metalc1 A OE2 GLU 264 A GLU 264 1_555 E FE HEM . A HEM 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.754 ? 
metalc ? metalc2 A SG CYS 400 A CYS 400 1_555 E FE HEM . A HEM 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc3 B OE2 GLU 264 B GLU 264 1_555 G FE HEM . B HEM 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc4 B SG CYS 400 B CYS 400 1_555 G FE HEM . B HEM 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? 
metalc ? metalc5 C OE2 GLU 264 C GLU 264 1_555 I FE HEM . C HEM 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
metalc ? metalc6 C SG CYS 400 C CYS 400 1_555 I FE HEM . C HEM 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.801 ? 
metalc ? metalc7 D OE2 GLU 264 D GLU 264 1_555 K FE HEM . D HEM 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
metalc ? metalc8 D SG CYS 400 D CYS 400 1_555 K FE HEM . D HEM 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     1SMJ 
_atom_sites.fract_transf_matrix[1][1]    0.009319 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005992 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004446 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 HEM A 1 472 460 HEM HEM . 
F 3 PAM A 1 1465 1465 PAM PAM . 
G 2 HEM B 1 472 460 HEM HEM . 
H 3 PAM B 1 2465 2465 PAM PAM . 
I 2 HEM C 1 472 460 HEM HEM . 
J 3 PAM C 1 3465 3465 PAM PAM . 
K 2 HEM D 1 472 460 HEM HEM . 
L 3 PAM D 1 4465 4465 PAM PAM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . I 2 78.249 51.456 117.48 1 31.61 ? CHA HEM 472 C 1 
HETATM 2 C CHB HEM . . . I 2 74.048 53.098 115.974 1 25.28 ? CHB HEM 472 C 1 
HETATM 3 C CHC HEM . . . I 2 71.64 49.564 118.097 1 29.11 ? CHC HEM 472 C 1 
HETATM 4 C CHD HEM . . . I 2 75.803 48.106 120.06 1 31.46 ? CHD HEM 472 C 1 
HETATM 5 C C1A HEM . . . I 2 77.288 52.174 116.866 1 30.46 ? C1A HEM 472 C 1 
HETATM 6 C C2A HEM . . . I 2 77.6 53.366 116.105 1 27.05 ? C2A HEM 472 C 1 
HETATM 7 C C3A HEM . . . I 2 76.391 53.771 115.675 1 30.5 ? C3A HEM 472 C 1 
HETATM 8 C C4A HEM . . . I 2 75.345 52.851 116.2 1 28 ? C4A HEM 472 C 1 
HETATM 9 C CMA HEM . . . I 2 75.987 55.048 114.88 1 26.3 ? CMA HEM 472 C 1 
HETATM 10 C CAA HEM . . . I 2 78.949 54.006 115.828 1 28.72 ? CAA HEM 472 C 1 
HETATM 11 C CBA HEM . . . I 2 79.86 54.449 117.008 1 36.07 ? CBA HEM 472 C 1 
HETATM 12 C CGA HEM . . . I 2 80.687 55.556 116.348 1 45.16 ? CGA HEM 472 C 1 
HETATM 13 O O1A HEM . . . I 2 80.811 55.423 115.088 1 50.93 ? O1A HEM 472 C 1 
HETATM 14 O O2A HEM . . . I 2 81.209 56.579 116.945 1 47.01 ? O2A HEM 472 C 1 
HETATM 15 C C1B HEM . . . I 2 73.105 52.288 116.433 1 28.13 ? C1B HEM 472 C 1 
HETATM 16 C C2B HEM . . . I 2 71.709 52.502 116.121 1 29.17 ? C2B HEM 472 C 1 
HETATM 17 C C3B HEM . . . I 2 71.02 51.494 116.668 1 30.41 ? C3B HEM 472 C 1 
HETATM 18 C C4B HEM . . . I 2 71.984 50.677 117.369 1 32.69 ? C4B HEM 472 C 1 
HETATM 19 C CMB HEM . . . I 2 71.277 53.741 115.227 1 33.21 ? CMB HEM 472 C 1 
HETATM 20 C CAB HEM . . . I 2 69.512 51.178 116.671 1 28.29 ? CAB HEM 472 C 1 
HETATM 21 C CBB HEM . . . I 2 69 51.581 115.492 1 28.88 ? CBB HEM 472 C 1 
HETATM 22 C C1C HEM . . . I 2 72.685 48.975 118.69 1 27.38 ? C1C HEM 472 C 1 
HETATM 23 C C2C HEM . . . I 2 72.436 47.765 119.353 1 26.35 ? C2C HEM 472 C 1 
HETATM 24 C C3C HEM . . . I 2 73.575 47.395 119.971 1 27.26 ? C3C HEM 472 C 1 
HETATM 25 C C4C HEM . . . I 2 74.566 48.316 119.558 1 27.02 ? C4C HEM 472 C 1 
HETATM 26 C CMC HEM . . . I 2 71.05 47.224 119.551 1 25.44 ? CMC HEM 472 C 1 
HETATM 27 C CAC HEM . . . I 2 73.859 46.163 120.853 1 24.25 ? CAC HEM 472 C 1 
HETATM 28 C CBC HEM . . . I 2 72.869 45.326 121.232 1 23.95 ? CBC HEM 472 C 1 
HETATM 29 C C1D HEM . . . I 2 76.834 48.871 119.612 1 35.19 ? C1D HEM 472 C 1 
HETATM 30 C C2D HEM . . . I 2 78.194 48.708 119.982 1 37.21 ? C2D HEM 472 C 1 
HETATM 31 C C3D HEM . . . I 2 78.928 49.772 119.218 1 41.07 ? C3D HEM 472 C 1 
HETATM 32 C C4D HEM . . . I 2 77.938 50.432 118.391 1 37.1 ? C4D HEM 472 C 1 
HETATM 33 C CMD HEM . . . I 2 78.776 47.716 120.954 1 41.12 ? CMD HEM 472 C 1 
HETATM 34 C CAD HEM . . . I 2 80.431 50.072 119.19 1 42.16 ? CAD HEM 472 C 1 
HETATM 35 C CBD HEM . . . I 2 80.887 49.069 118.117 1 47.05 ? CBD HEM 472 C 1 
HETATM 36 C CGD HEM . . . I 2 82.256 49.582 117.847 1 51.81 ? CGD HEM 472 C 1 
HETATM 37 O O1D HEM . . . I 2 83.209 48.773 118.15 1 48 ? O1D HEM 472 C 1 
HETATM 38 O O2D HEM . . . I 2 82.311 50.809 117.426 1 54.97 ? O2D HEM 472 C 1 
HETATM 39 N NA HEM . . . I 2 75.922 51.873 116.927 1 23.71 ? NA HEM 472 C 1 
HETATM 40 N NB HEM . . . I 2 73.254 51.18 117.198 1 29.42 ? NB HEM 472 C 1 
HETATM 41 N NC HEM . . . I 2 74.024 49.294 118.752 1 24.21 ? NC HEM 472 C 1 
HETATM 42 N ND HEM . . . I 2 76.711 49.882 118.69 1 30.63 ? ND HEM 472 C 1 
HETATM 43 FE FE HEM . . . I 2 75.143 50.518 117.886 1 41.15 ? FE HEM 472 C 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#