data_1SNF # _model_server_result.job_id zH1oJG4ZfeAMnGHuw18UpA _model_server_result.datetime_utc '2024-11-26 03:27:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1snf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2171}' # _entry.id 1SNF # _exptl.entry_id 1SNF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1SNF _cell.length_a 58.228 _cell.length_b 77.496 _cell.length_c 93.949 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SNF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 G N N ? 2 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D MG MG . A MG 2171 1_555 O O HOH . A HOH 2243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? metalc ? metalc2 D MG MG . A MG 2171 1_555 O O HOH . A HOH 2244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.813 ? metalc ? metalc3 D MG MG . A MG 2171 1_555 I OP1 UMP . B UMP 2170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.143 ? metalc ? metalc4 D MG MG . A MG 2171 1_555 P O HOH . B HOH 3239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc5 D MG MG . A MG 2171 1_555 P O HOH . B HOH 3248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc6 O O HOH . A HOH 2198 1_555 L MG MG . C MG 1171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc7 O O HOH . A HOH 2224 1_555 L MG MG . C MG 1171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc8 O O HOH . A HOH 2247 1_555 L MG MG . C MG 1171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc9 G MG MG . B MG 3171 1_555 P O HOH . B HOH 3241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc10 G MG MG . B MG 3171 1_555 P O HOH . B HOH 3244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc11 G MG MG . B MG 3171 1_555 P O HOH . B HOH 3247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc12 G MG MG . B MG 3171 1_555 N OP3 UMP . C UMP 3170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc13 G MG MG . B MG 3171 1_555 Q O HOH . C HOH 3255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.924 ? metalc ? metalc14 L MG MG . C MG 1171 1_555 Q O HOH . C HOH 3227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc15 L MG MG . C MG 1171 1_555 Q O HOH . C HOH 3229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc16 L MG MG . C MG 1171 1_555 Q O HOH . C HOH 3236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1SNF _atom_sites.fract_transf_matrix[1][1] 0.017174 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012904 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010644 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 MG A 1 2171 171 MG MG . E 3 NO3 A 1 2172 5 NO3 NO3 . F 4 UMP A 1 1170 170 UMP UMP . G 2 MG B 1 3171 171 MG MG . H 3 NO3 B 1 3172 3 NO3 NO3 . I 4 UMP B 1 2170 170 UMP UMP . J 5 TRS B 1 3173 1 TRS TRS . K 5 TRS B 1 3174 2 TRS TRS . L 2 MG C 1 1171 171 MG MG . M 3 NO3 C 1 1172 4 NO3 NO3 . N 4 UMP C 1 3170 170 UMP UMP . O 6 HOH A 1 2173 13 HOH HOH . O 6 HOH A 2 2174 14 HOH HOH . O 6 HOH A 3 2175 22 HOH HOH . O 6 HOH A 4 2176 26 HOH HOH . O 6 HOH A 5 2177 27 HOH HOH . O 6 HOH A 6 2178 28 HOH HOH . O 6 HOH A 7 2179 32 HOH HOH . O 6 HOH A 8 2180 33 HOH HOH . O 6 HOH A 9 2181 36 HOH HOH . O 6 HOH A 10 2182 39 HOH HOH . O 6 HOH A 11 2183 46 HOH HOH . O 6 HOH A 12 2184 48 HOH HOH . O 6 HOH A 13 2185 56 HOH HOH . O 6 HOH A 14 2186 62 HOH HOH . O 6 HOH A 15 2187 63 HOH HOH . O 6 HOH A 16 2188 64 HOH HOH . O 6 HOH A 17 2189 66 HOH HOH . O 6 HOH A 18 2190 67 HOH HOH . O 6 HOH A 19 2191 69 HOH HOH . O 6 HOH A 20 2192 71 HOH HOH . O 6 HOH A 21 2193 72 HOH HOH . O 6 HOH A 22 2194 74 HOH HOH . O 6 HOH A 23 2195 75 HOH HOH . O 6 HOH A 24 2196 80 HOH HOH . O 6 HOH A 25 2197 83 HOH HOH . O 6 HOH A 26 2198 84 HOH HOH . O 6 HOH A 27 2199 85 HOH HOH . O 6 HOH A 28 2200 88 HOH HOH . O 6 HOH A 29 2201 92 HOH HOH . O 6 HOH A 30 2202 93 HOH HOH . O 6 HOH A 31 2203 96 HOH HOH . O 6 HOH A 32 2204 102 HOH HOH . O 6 HOH A 33 2205 106 HOH HOH . O 6 HOH A 34 2206 107 HOH HOH . O 6 HOH A 35 2207 108 HOH HOH . O 6 HOH A 36 2208 109 HOH HOH . O 6 HOH A 37 2209 112 HOH HOH . O 6 HOH A 38 2210 115 HOH HOH . O 6 HOH A 39 2211 117 HOH HOH . O 6 HOH A 40 2212 118 HOH HOH . O 6 HOH A 41 2213 120 HOH HOH . O 6 HOH A 42 2214 124 HOH HOH . O 6 HOH A 43 2215 128 HOH HOH . O 6 HOH A 44 2216 132 HOH HOH . O 6 HOH A 45 2217 136 HOH HOH . O 6 HOH A 46 2218 138 HOH HOH . O 6 HOH A 47 2219 142 HOH HOH . O 6 HOH A 48 2220 146 HOH HOH . O 6 HOH A 49 2221 149 HOH HOH . O 6 HOH A 50 2222 156 HOH HOH . O 6 HOH A 51 2223 160 HOH HOH . O 6 HOH A 52 2224 166 HOH HOH . O 6 HOH A 53 2225 167 HOH HOH . O 6 HOH A 54 2226 168 HOH HOH . O 6 HOH A 55 2227 170 HOH HOH . O 6 HOH A 56 2228 181 HOH HOH . O 6 HOH A 57 2229 182 HOH HOH . O 6 HOH A 58 2230 183 HOH HOH . O 6 HOH A 59 2231 187 HOH HOH . O 6 HOH A 60 2232 192 HOH HOH . O 6 HOH A 61 2233 194 HOH HOH . O 6 HOH A 62 2234 195 HOH HOH . O 6 HOH A 63 2235 197 HOH HOH . O 6 HOH A 64 2236 200 HOH HOH . O 6 HOH A 65 2237 203 HOH HOH . O 6 HOH A 66 2238 204 HOH HOH . O 6 HOH A 67 2239 205 HOH HOH . O 6 HOH A 68 2240 217 HOH HOH . O 6 HOH A 69 2241 218 HOH HOH . O 6 HOH A 70 2242 219 HOH HOH . O 6 HOH A 71 2243 221 HOH HOH . O 6 HOH A 72 2244 222 HOH HOH . O 6 HOH A 73 2245 224 HOH HOH . O 6 HOH A 74 2246 233 HOH HOH . O 6 HOH A 75 2247 238 HOH HOH . O 6 HOH A 76 2248 244 HOH HOH . O 6 HOH A 77 2249 248 HOH HOH . O 6 HOH A 78 2250 254 HOH HOH . P 6 HOH B 1 3175 6 HOH HOH . P 6 HOH B 2 3176 7 HOH HOH . P 6 HOH B 3 3177 9 HOH HOH . P 6 HOH B 4 3178 11 HOH HOH . P 6 HOH B 5 3179 16 HOH HOH . P 6 HOH B 6 3180 17 HOH HOH . P 6 HOH B 7 3181 24 HOH HOH . P 6 HOH B 8 3182 25 HOH HOH . P 6 HOH B 9 3183 29 HOH HOH . P 6 HOH B 10 3184 30 HOH HOH . P 6 HOH B 11 3185 35 HOH HOH . P 6 HOH B 12 3186 37 HOH HOH . P 6 HOH B 13 3187 38 HOH HOH . P 6 HOH B 14 3188 41 HOH HOH . P 6 HOH B 15 3189 43 HOH HOH . P 6 HOH B 16 3190 45 HOH HOH . P 6 HOH B 17 3191 55 HOH HOH . P 6 HOH B 18 3192 57 HOH HOH . P 6 HOH B 19 3193 58 HOH HOH . P 6 HOH B 20 3194 68 HOH HOH . P 6 HOH B 21 3195 77 HOH HOH . P 6 HOH B 22 3196 78 HOH HOH . P 6 HOH B 23 3197 79 HOH HOH . P 6 HOH B 24 3198 81 HOH HOH . P 6 HOH B 25 3199 86 HOH HOH . P 6 HOH B 26 3200 89 HOH HOH . P 6 HOH B 27 3201 94 HOH HOH . P 6 HOH B 28 3202 95 HOH HOH . P 6 HOH B 29 3203 98 HOH HOH . P 6 HOH B 30 3204 99 HOH HOH . P 6 HOH B 31 3205 103 HOH HOH . P 6 HOH B 32 3206 105 HOH HOH . P 6 HOH B 33 3207 114 HOH HOH . P 6 HOH B 34 3208 116 HOH HOH . P 6 HOH B 35 3209 122 HOH HOH . P 6 HOH B 36 3210 125 HOH HOH . P 6 HOH B 37 3211 129 HOH HOH . P 6 HOH B 38 3212 130 HOH HOH . P 6 HOH B 39 3213 133 HOH HOH . P 6 HOH B 40 3214 134 HOH HOH . P 6 HOH B 41 3215 135 HOH HOH . P 6 HOH B 42 3216 137 HOH HOH . P 6 HOH B 43 3217 139 HOH HOH . P 6 HOH B 44 3218 140 HOH HOH . P 6 HOH B 45 3219 141 HOH HOH . P 6 HOH B 46 3220 143 HOH HOH . P 6 HOH B 47 3221 144 HOH HOH . P 6 HOH B 48 3222 145 HOH HOH . P 6 HOH B 49 3223 150 HOH HOH . P 6 HOH B 50 3224 151 HOH HOH . P 6 HOH B 51 3225 158 HOH HOH . P 6 HOH B 52 3226 161 HOH HOH . P 6 HOH B 53 3227 162 HOH HOH . P 6 HOH B 54 3228 172 HOH HOH . P 6 HOH B 55 3229 175 HOH HOH . P 6 HOH B 56 3230 177 HOH HOH . P 6 HOH B 57 3231 178 HOH HOH . P 6 HOH B 58 3232 179 HOH HOH . P 6 HOH B 59 3233 180 HOH HOH . P 6 HOH B 60 3234 186 HOH HOH . P 6 HOH B 61 3235 201 HOH HOH . P 6 HOH B 62 3236 202 HOH HOH . P 6 HOH B 63 3237 215 HOH HOH . P 6 HOH B 64 3238 220 HOH HOH . P 6 HOH B 65 3239 226 HOH HOH . P 6 HOH B 66 3240 227 HOH HOH . P 6 HOH B 67 3241 228 HOH HOH . P 6 HOH B 68 3242 229 HOH HOH . P 6 HOH B 69 3243 230 HOH HOH . P 6 HOH B 70 3244 232 HOH HOH . P 6 HOH B 71 3245 234 HOH HOH . P 6 HOH B 72 3246 237 HOH HOH . P 6 HOH B 73 3247 239 HOH HOH . P 6 HOH B 74 3248 240 HOH HOH . P 6 HOH B 75 3249 241 HOH HOH . P 6 HOH B 76 3250 243 HOH HOH . P 6 HOH B 77 3251 245 HOH HOH . P 6 HOH B 78 3252 246 HOH HOH . P 6 HOH B 79 3253 251 HOH HOH . P 6 HOH B 80 3254 252 HOH HOH . P 6 HOH B 81 3255 253 HOH HOH . P 6 HOH B 82 3256 256 HOH HOH . P 6 HOH B 83 3257 257 HOH HOH . Q 6 HOH C 1 3171 8 HOH HOH . Q 6 HOH C 2 3172 10 HOH HOH . Q 6 HOH C 3 3173 12 HOH HOH . Q 6 HOH C 4 3174 15 HOH HOH . Q 6 HOH C 5 3175 18 HOH HOH . Q 6 HOH C 6 3176 19 HOH HOH . Q 6 HOH C 7 3177 20 HOH HOH . Q 6 HOH C 8 3178 21 HOH HOH . Q 6 HOH C 9 3179 23 HOH HOH . Q 6 HOH C 10 3180 31 HOH HOH . Q 6 HOH C 11 3181 34 HOH HOH . Q 6 HOH C 12 3182 40 HOH HOH . Q 6 HOH C 13 3183 42 HOH HOH . Q 6 HOH C 14 3184 44 HOH HOH . Q 6 HOH C 15 3185 47 HOH HOH . Q 6 HOH C 16 3186 49 HOH HOH . Q 6 HOH C 17 3187 50 HOH HOH . Q 6 HOH C 18 3188 51 HOH HOH . Q 6 HOH C 19 3189 52 HOH HOH . Q 6 HOH C 20 3190 53 HOH HOH . Q 6 HOH C 21 3191 54 HOH HOH . Q 6 HOH C 22 3192 59 HOH HOH . Q 6 HOH C 23 3193 60 HOH HOH . Q 6 HOH C 24 3194 61 HOH HOH . Q 6 HOH C 25 3195 65 HOH HOH . Q 6 HOH C 26 3196 70 HOH HOH . Q 6 HOH C 27 3197 73 HOH HOH . Q 6 HOH C 28 3198 76 HOH HOH . Q 6 HOH C 29 3199 82 HOH HOH . Q 6 HOH C 30 3200 87 HOH HOH . Q 6 HOH C 31 3201 90 HOH HOH . Q 6 HOH C 32 3202 91 HOH HOH . Q 6 HOH C 33 3203 97 HOH HOH . Q 6 HOH C 34 3204 100 HOH HOH . Q 6 HOH C 35 3205 101 HOH HOH . Q 6 HOH C 36 3206 104 HOH HOH . Q 6 HOH C 37 3207 110 HOH HOH . Q 6 HOH C 38 3208 111 HOH HOH . Q 6 HOH C 39 3209 113 HOH HOH . Q 6 HOH C 40 3210 119 HOH HOH . Q 6 HOH C 41 3211 121 HOH HOH . Q 6 HOH C 42 3212 123 HOH HOH . Q 6 HOH C 43 3213 126 HOH HOH . Q 6 HOH C 44 3214 127 HOH HOH . Q 6 HOH C 45 3215 131 HOH HOH . Q 6 HOH C 46 3216 147 HOH HOH . Q 6 HOH C 47 3217 148 HOH HOH . Q 6 HOH C 48 3218 152 HOH HOH . Q 6 HOH C 49 3219 153 HOH HOH . Q 6 HOH C 50 3220 154 HOH HOH . Q 6 HOH C 51 3221 155 HOH HOH . Q 6 HOH C 52 3222 157 HOH HOH . Q 6 HOH C 53 3223 159 HOH HOH . Q 6 HOH C 54 3224 163 HOH HOH . Q 6 HOH C 55 3225 164 HOH HOH . Q 6 HOH C 56 3226 165 HOH HOH . Q 6 HOH C 57 3227 169 HOH HOH . Q 6 HOH C 58 3228 171 HOH HOH . Q 6 HOH C 59 3229 173 HOH HOH . Q 6 HOH C 60 3230 174 HOH HOH . Q 6 HOH C 61 3231 176 HOH HOH . Q 6 HOH C 62 3232 184 HOH HOH . Q 6 HOH C 63 3233 185 HOH HOH . Q 6 HOH C 64 3234 188 HOH HOH . Q 6 HOH C 65 3235 189 HOH HOH . Q 6 HOH C 66 3236 190 HOH HOH . Q 6 HOH C 67 3237 193 HOH HOH . Q 6 HOH C 68 3238 196 HOH HOH . Q 6 HOH C 69 3239 198 HOH HOH . Q 6 HOH C 70 3240 199 HOH HOH . Q 6 HOH C 71 3241 207 HOH HOH . Q 6 HOH C 72 3242 208 HOH HOH . Q 6 HOH C 73 3243 209 HOH HOH . Q 6 HOH C 74 3244 210 HOH HOH . Q 6 HOH C 75 3245 211 HOH HOH . Q 6 HOH C 76 3246 212 HOH HOH . Q 6 HOH C 77 3247 213 HOH HOH . Q 6 HOH C 78 3248 214 HOH HOH . Q 6 HOH C 79 3249 223 HOH HOH . Q 6 HOH C 80 3250 225 HOH HOH . Q 6 HOH C 81 3251 235 HOH HOH . Q 6 HOH C 82 3252 236 HOH HOH . Q 6 HOH C 83 3253 247 HOH HOH . Q 6 HOH C 84 3254 249 HOH HOH . Q 6 HOH C 85 3255 255 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 1.757 _atom_site.Cartn_y -4.577 _atom_site.Cartn_z -11.792 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 51.64 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 2171 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 1 #