data_1SNY # _model_server_result.job_id G9qan4TBzxGHt5-kxqXCUA _model_server_result.datetime_utc '2025-02-26 21:50:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1sny # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":400}' # _entry.id 1SNY # _exptl.entry_id 1SNY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1SNY _cell.length_a 71.7 _cell.length_b 73.9 _cell.length_c 92.3 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SNY _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 0 0 92.3 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 20 A HIS 1 1_555 A N MSE 21 A MSE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C MSE 21 A MSE 2 1_555 A N ASN 22 A ASN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale3 A C ILE 139 A ILE 120 1_555 A N MSE 140 A MSE 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale4 A C MSE 140 A MSE 121 1_555 A N LEU 141 A LEU 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C PRO 160 A PRO 141 1_555 A N MSE 161 A MSE 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale6 A C MSE 161 A MSE 142 1_555 A N GLY 162 A GLY 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale7 A C ASN 170 A ASN 151 1_555 A N MSE 171 A MSE 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale8 A C MSE 171 A MSE 152 1_555 A N SER 172 A SER 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 A C GLY 185 A GLY 166 1_555 A N MSE 186 A MSE 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale10 A C MSE 186 A MSE 167 1_555 A N TYR 187 A TYR 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 A C ILE 212 A ILE 193 1_555 A N MSE 213 A MSE 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale12 A C MSE 213 A MSE 194 1_555 A N CYS 214 A CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale13 A C ASP 225 A ASP 206 1_555 A N MSE 226 A MSE 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale14 A C MSE 226 A MSE 207 1_555 A N GLY 227 A GLY 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 256 n n PA O2A NAP sing 257 n n PA O5B NAP sing 258 n n PA O3 NAP sing 259 n n O2A HOA2 NAP sing 260 n n O5B C5B NAP sing 261 n n C5B C4B NAP sing 262 n n C5B H51A NAP sing 263 n n C5B H52A NAP sing 264 n n C4B O4B NAP sing 265 n n C4B C3B NAP sing 266 n n C4B H4B NAP sing 267 n n O4B C1B NAP sing 268 n n C3B O3B NAP sing 269 n n C3B C2B NAP sing 270 n n C3B H3B NAP sing 271 n n O3B HO3A NAP sing 272 n n C2B O2B NAP sing 273 n n C2B C1B NAP sing 274 n n C2B H2B NAP sing 275 n n O2B P2B NAP sing 276 n n C1B N9A NAP sing 277 n n C1B H1B NAP sing 278 n n N9A C8A NAP sing 279 n y N9A C4A NAP sing 280 n y C8A N7A NAP doub 281 n y C8A H8A NAP sing 282 n n N7A C5A NAP sing 283 n y C5A C6A NAP sing 284 n y C5A C4A NAP doub 285 n y C6A N6A NAP sing 286 n n C6A N1A NAP doub 287 n y N6A H61A NAP sing 288 n n N6A H62A NAP sing 289 n n N1A C2A NAP sing 290 n y C2A N3A NAP doub 291 n y C2A H2A NAP sing 292 n n N3A C4A NAP sing 293 n y O3 PN NAP sing 294 n n PN O1N NAP doub 295 n n PN O2N NAP sing 296 n n PN O5D NAP sing 297 n n O5D C5D NAP sing 298 n n C5D C4D NAP sing 299 n n C5D H51N NAP sing 300 n n C5D H52N NAP sing 301 n n C4D O4D NAP sing 302 n n C4D C3D NAP sing 303 n n C4D H4D NAP sing 304 n n O4D C1D NAP sing 305 n n C3D O3D NAP sing 306 n n C3D C2D NAP sing 307 n n C3D H3D NAP sing 308 n n O3D HO3N NAP sing 309 n n C2D O2D NAP sing 310 n n C2D C1D NAP sing 311 n n C2D H2D NAP sing 312 n n O2D HO2N NAP sing 313 n n C1D N1N NAP sing 314 n n C1D H1D NAP sing 315 n n N1N C2N NAP sing 316 n y N1N C6N NAP doub 317 n y C2N C3N NAP doub 318 n y C2N H2N NAP sing 319 n n C3N C7N NAP sing 320 n n C3N C4N NAP sing 321 n y C7N O7N NAP doub 322 n n C7N N7N NAP sing 323 n n N7N H71N NAP sing 324 n n N7N H72N NAP sing 325 n n C4N C5N NAP doub 326 n y C4N H4N NAP sing 327 n n C5N C6N NAP sing 328 n y C5N H5N NAP sing 329 n n C6N H6N NAP sing 330 n n P2B O1X NAP doub 331 n n P2B O2X NAP sing 332 n n P2B O3X NAP sing 333 n n O2X HOP2 NAP sing 334 n n O3X HOP3 NAP sing 335 n n # _atom_sites.entry_id 1SNY _atom_sites.fract_transf_matrix[1][1] 0.013947 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013532 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010834 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 400 400 NAP NAP . C 3 HOH A 1 301 301 HOH HOH . C 3 HOH A 2 302 302 HOH HOH . C 3 HOH A 3 303 303 HOH HOH . C 3 HOH A 4 304 304 HOH HOH . C 3 HOH A 5 305 305 HOH HOH . C 3 HOH A 6 306 306 HOH HOH . C 3 HOH A 7 307 307 HOH HOH . C 3 HOH A 8 308 308 HOH HOH . C 3 HOH A 9 309 309 HOH HOH . C 3 HOH A 10 310 310 HOH HOH . C 3 HOH A 11 311 311 HOH HOH . C 3 HOH A 12 312 312 HOH HOH . C 3 HOH A 13 313 313 HOH HOH . C 3 HOH A 14 314 314 HOH HOH . C 3 HOH A 15 315 315 HOH HOH . C 3 HOH A 16 316 316 HOH HOH . C 3 HOH A 17 317 317 HOH HOH . C 3 HOH A 18 318 318 HOH HOH . C 3 HOH A 19 319 319 HOH HOH . C 3 HOH A 20 320 320 HOH HOH . C 3 HOH A 21 321 321 HOH HOH . C 3 HOH A 22 322 322 HOH HOH . C 3 HOH A 23 323 323 HOH HOH . C 3 HOH A 24 324 324 HOH HOH . C 3 HOH A 25 325 325 HOH HOH . C 3 HOH A 26 326 326 HOH HOH . C 3 HOH A 27 327 327 HOH HOH . C 3 HOH A 28 328 328 HOH HOH . C 3 HOH A 29 329 329 HOH HOH . C 3 HOH A 30 330 330 HOH HOH . C 3 HOH A 31 331 331 HOH HOH . C 3 HOH A 32 332 332 HOH HOH . C 3 HOH A 33 333 333 HOH HOH . C 3 HOH A 34 334 334 HOH HOH . C 3 HOH A 35 335 335 HOH HOH . C 3 HOH A 36 336 336 HOH HOH . C 3 HOH A 37 337 337 HOH HOH . C 3 HOH A 38 338 338 HOH HOH . C 3 HOH A 39 339 339 HOH HOH . C 3 HOH A 40 340 340 HOH HOH . C 3 HOH A 41 341 341 HOH HOH . C 3 HOH A 42 342 342 HOH HOH . C 3 HOH A 43 343 343 HOH HOH . C 3 HOH A 44 344 344 HOH HOH . C 3 HOH A 45 345 345 HOH HOH . C 3 HOH A 46 346 346 HOH HOH . C 3 HOH A 47 347 347 HOH HOH . C 3 HOH A 48 348 348 HOH HOH . C 3 HOH A 49 349 349 HOH HOH . C 3 HOH A 50 350 350 HOH HOH . C 3 HOH A 51 351 351 HOH HOH . C 3 HOH A 52 352 352 HOH HOH . C 3 HOH A 53 353 353 HOH HOH . C 3 HOH A 54 354 354 HOH HOH . C 3 HOH A 55 355 355 HOH HOH . C 3 HOH A 56 356 356 HOH HOH . C 3 HOH A 57 357 357 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 19.742 20.799 46.937 1 34.06 ? PA NAP 400 A 1 HETATM 2 O O1A NAP . . . B 2 19.102 21.651 47.859 1 36.4 ? O1A NAP 400 A 1 HETATM 3 O O2A NAP . . . B 2 21.206 20.413 46.964 1 36.32 ? O2A NAP 400 A 1 HETATM 4 O O5B NAP . . . B 2 19.501 21.339 45.451 1 35.73 ? O5B NAP 400 A 1 HETATM 5 C C5B NAP . . . B 2 18.193 21.847 45.079 1 35.49 ? C5B NAP 400 A 1 HETATM 6 C C4B NAP . . . B 2 18.499 22.469 43.68 1 34.84 ? C4B NAP 400 A 1 HETATM 7 O O4B NAP . . . B 2 17.198 23.024 43.173 1 33.3 ? O4B NAP 400 A 1 HETATM 8 C C3B NAP . . . B 2 19.441 23.714 43.696 1 35.05 ? C3B NAP 400 A 1 HETATM 9 O O3B NAP . . . B 2 20.213 23.664 42.486 1 35.69 ? O3B NAP 400 A 1 HETATM 10 C C2B NAP . . . B 2 18.468 24.872 43.765 1 34.43 ? C2B NAP 400 A 1 HETATM 11 O O2B NAP . . . B 2 18.959 26.142 43.358 1 35.8 ? O2B NAP 400 A 1 HETATM 12 C C1B NAP . . . B 2 17.317 24.389 42.854 1 32.59 ? C1B NAP 400 A 1 HETATM 13 N N9A NAP . . . B 2 16.129 25.179 43.133 1 30.85 ? N9A NAP 400 A 1 HETATM 14 C C8A NAP . . . B 2 15.337 25.304 44.257 1 31.11 ? C8A NAP 400 A 1 HETATM 15 N N7A NAP . . . B 2 14.328 26.156 44.116 1 27.18 ? N7A NAP 400 A 1 HETATM 16 C C5A NAP . . . B 2 14.478 26.612 42.815 1 28.11 ? C5A NAP 400 A 1 HETATM 17 C C6A NAP . . . B 2 13.712 27.54 42.087 1 27.78 ? C6A NAP 400 A 1 HETATM 18 N N6A NAP . . . B 2 12.618 28.219 42.517 1 29.95 ? N6A NAP 400 A 1 HETATM 19 N N1A NAP . . . B 2 14.116 27.801 40.764 1 29.72 ? N1A NAP 400 A 1 HETATM 20 C C2A NAP . . . B 2 15.235 27.161 40.205 1 28.49 ? C2A NAP 400 A 1 HETATM 21 N N3A NAP . . . B 2 16.009 26.246 40.904 1 27.91 ? N3A NAP 400 A 1 HETATM 22 C C4A NAP . . . B 2 15.59 26.005 42.204 1 28.8 ? C4A NAP 400 A 1 HETATM 23 O O3 NAP . . . B 2 18.976 19.418 46.905 1 33.79 ? O3 NAP 400 A 1 HETATM 24 P PN NAP . . . B 2 19.216 18.065 46.134 1 35.82 ? PN NAP 400 A 1 HETATM 25 O O1N NAP . . . B 2 19.481 16.973 47.085 1 34.15 ? O1N NAP 400 A 1 HETATM 26 O O2N NAP . . . B 2 20.27 18.34 45.12 1 33.07 ? O2N NAP 400 A 1 HETATM 27 O O5D NAP . . . B 2 17.794 17.799 45.489 1 34.68 ? O5D NAP 400 A 1 HETATM 28 C C5D NAP . . . B 2 17.685 17.442 44.068 1 34.55 ? C5D NAP 400 A 1 HETATM 29 C C4D NAP . . . B 2 16.317 16.824 43.842 1 33.92 ? C4D NAP 400 A 1 HETATM 30 O O4D NAP . . . B 2 16.286 15.487 44.405 1 33.91 ? O4D NAP 400 A 1 HETATM 31 C C3D NAP . . . B 2 15.113 17.57 44.503 1 33.76 ? C3D NAP 400 A 1 HETATM 32 O O3D NAP . . . B 2 13.972 17.592 43.612 1 33.5 ? O3D NAP 400 A 1 HETATM 33 C C2D NAP . . . B 2 14.882 16.767 45.774 1 33.37 ? C2D NAP 400 A 1 HETATM 34 O O2D NAP . . . B 2 13.587 16.922 46.311 1 31.55 ? O2D NAP 400 A 1 HETATM 35 C C1D NAP . . . B 2 15.148 15.381 45.323 1 33.88 ? C1D NAP 400 A 1 HETATM 36 N N1N NAP . . . B 2 15.611 14.41 46.339 1 33.27 ? N1N NAP 400 A 1 HETATM 37 C C2N NAP . . . B 2 16.821 14.52 47.097 1 34.79 ? C2N NAP 400 A 1 HETATM 38 C C3N NAP . . . B 2 17.101 13.5 48.02 1 35.43 ? C3N NAP 400 A 1 HETATM 39 C C7N NAP . . . B 2 18.385 13.566 48.858 1 36.64 ? C7N NAP 400 A 1 HETATM 40 O O7N NAP . . . B 2 18.569 12.65 49.638 1 36.09 ? O7N NAP 400 A 1 HETATM 41 N N7N NAP . . . B 2 19.227 14.556 48.731 1 34.88 ? N7N NAP 400 A 1 HETATM 42 C C4N NAP . . . B 2 16.193 12.361 48.205 1 36.38 ? C4N NAP 400 A 1 HETATM 43 C C5N NAP . . . B 2 15.012 12.309 47.425 1 34.79 ? C5N NAP 400 A 1 HETATM 44 C C6N NAP . . . B 2 14.704 13.327 46.486 1 35.24 ? C6N NAP 400 A 1 HETATM 45 P P2B NAP . . . B 2 19.638 27.218 44.396 1 38.77 ? P2B NAP 400 A 1 HETATM 46 O O1X NAP . . . B 2 21.078 26.74 44.604 1 35.96 ? O1X NAP 400 A 1 HETATM 47 O O2X NAP . . . B 2 19.531 28.48 43.606 1 35.62 ? O2X NAP 400 A 1 HETATM 48 O O3X NAP . . . B 2 18.837 27.172 45.689 1 35.63 ? O3X NAP 400 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 487 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #