data_1SO8 # _model_server_result.job_id OxVlJnvPf_WedCtjJ-Hr4g _model_server_result.datetime_utc '2024-11-27 09:36:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1so8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 1SO8 # _exptl.entry_id 1SO8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1SO8 _cell.length_a 130 _cell.length_b 130 _cell.length_c 130 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SO8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 207 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 4 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 PISA,PQS octameric 8 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1,2,3,4 A,B,C,D,E 2 1,5,6,7,3,8,4,9 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_665 -z+1,-x+1,y 0 0 -1 -1 0 0 0 1 0 130 130 0 3 'crystal symmetry operation' 21_556 z,y,-x+1 0 0 1 0 1 0 -1 0 0 0 0 130 4 'crystal symmetry operation' 23_655 -z+1,y,x 0 0 -1 0 1 0 1 0 0 130 0 0 5 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 130 0 0 6 'crystal symmetry operation' 3_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 130 0 130 7 'crystal symmetry operation' 4_556 x,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 130 8 'crystal symmetry operation' 22_555 z,-y,x 0 0 1 0 -1 0 1 0 0 0 0 0 9 'crystal symmetry operation' 24_656 -z+1,-y,-x+1 0 0 -1 0 -1 0 -1 0 0 130 0 130 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 17 A GLY 17 1_555 C NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc2 A O SER 20 A SER 20 1_555 C NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc3 C NA NA . A NA 302 1_555 E O HOH . A HOH 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc4 C NA NA . A NA 302 1_555 E O HOH . A HOH 545 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc5 C NA NA . A NA 302 1_555 E O HOH . A HOH 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc6 C NA NA . A NA 302 1_555 E O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.966 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1SO8 _atom_sites.fract_transf_matrix[1][1] 0.007692 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007692 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007692 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 301 301 NA NA1 . C 2 NA A 1 302 302 NA NA1 . D 3 CL A 1 303 303 CL CL1 . E 4 HOH A 1 501 501 HOH TIP . E 4 HOH A 2 502 502 HOH TIP . E 4 HOH A 3 503 503 HOH TIP . E 4 HOH A 4 504 504 HOH TIP . E 4 HOH A 5 505 505 HOH TIP . E 4 HOH A 6 506 506 HOH TIP . E 4 HOH A 7 507 507 HOH TIP . E 4 HOH A 8 508 508 HOH TIP . E 4 HOH A 9 509 509 HOH TIP . E 4 HOH A 10 510 510 HOH TIP . E 4 HOH A 11 511 511 HOH TIP . E 4 HOH A 12 512 512 HOH TIP . E 4 HOH A 13 514 514 HOH TIP . E 4 HOH A 14 515 515 HOH TIP . E 4 HOH A 15 516 516 HOH TIP . E 4 HOH A 16 517 517 HOH TIP . E 4 HOH A 17 518 518 HOH TIP . E 4 HOH A 18 519 519 HOH TIP . E 4 HOH A 19 520 520 HOH TIP . E 4 HOH A 20 521 521 HOH TIP . E 4 HOH A 21 522 522 HOH TIP . E 4 HOH A 22 523 523 HOH TIP . E 4 HOH A 23 524 524 HOH TIP . E 4 HOH A 24 525 525 HOH TIP . E 4 HOH A 25 526 526 HOH TIP . E 4 HOH A 26 527 527 HOH TIP . E 4 HOH A 27 528 528 HOH TIP . E 4 HOH A 28 529 529 HOH TIP . E 4 HOH A 29 530 530 HOH TIP . E 4 HOH A 30 531 531 HOH TIP . E 4 HOH A 31 532 532 HOH TIP . E 4 HOH A 32 533 533 HOH TIP . E 4 HOH A 33 534 534 HOH TIP . E 4 HOH A 34 535 535 HOH TIP . E 4 HOH A 35 536 536 HOH TIP . E 4 HOH A 36 537 537 HOH TIP . E 4 HOH A 37 538 538 HOH TIP . E 4 HOH A 38 539 539 HOH TIP . E 4 HOH A 39 540 540 HOH TIP . E 4 HOH A 40 541 541 HOH TIP . E 4 HOH A 41 542 542 HOH TIP . E 4 HOH A 42 543 543 HOH TIP . E 4 HOH A 43 544 544 HOH TIP . E 4 HOH A 44 545 545 HOH TIP . E 4 HOH A 45 546 546 HOH TIP . E 4 HOH A 46 547 547 HOH TIP . E 4 HOH A 47 548 548 HOH TIP . E 4 HOH A 48 549 549 HOH TIP . E 4 HOH A 49 550 550 HOH TIP . E 4 HOH A 50 551 551 HOH TIP . E 4 HOH A 51 552 552 HOH TIP . E 4 HOH A 52 553 553 HOH TIP . E 4 HOH A 53 554 554 HOH TIP . E 4 HOH A 54 555 555 HOH TIP . E 4 HOH A 55 556 556 HOH TIP . E 4 HOH A 56 557 557 HOH TIP . E 4 HOH A 57 558 558 HOH TIP . E 4 HOH A 58 559 559 HOH TIP . E 4 HOH A 59 560 560 HOH TIP . E 4 HOH A 60 561 561 HOH TIP . E 4 HOH A 61 562 562 HOH TIP . E 4 HOH A 62 563 563 HOH TIP . E 4 HOH A 63 564 564 HOH TIP . E 4 HOH A 64 565 565 HOH TIP . E 4 HOH A 65 566 566 HOH TIP . E 4 HOH A 66 567 567 HOH TIP . E 4 HOH A 67 568 568 HOH TIP . E 4 HOH A 68 569 569 HOH TIP . E 4 HOH A 69 570 570 HOH TIP . E 4 HOH A 70 571 571 HOH TIP . E 4 HOH A 71 572 572 HOH TIP . E 4 HOH A 72 573 573 HOH TIP . E 4 HOH A 73 574 574 HOH TIP . E 4 HOH A 74 575 575 HOH TIP . E 4 HOH A 75 576 576 HOH TIP . E 4 HOH A 76 577 577 HOH TIP . E 4 HOH A 77 578 578 HOH TIP . E 4 HOH A 78 579 579 HOH TIP . E 4 HOH A 79 580 580 HOH TIP . E 4 HOH A 80 581 581 HOH TIP . E 4 HOH A 81 582 582 HOH TIP . E 4 HOH A 82 583 583 HOH TIP . E 4 HOH A 83 584 584 HOH TIP . E 4 HOH A 84 585 585 HOH TIP . E 4 HOH A 85 586 586 HOH TIP . E 4 HOH A 86 587 587 HOH TIP . E 4 HOH A 87 588 588 HOH TIP . E 4 HOH A 88 589 589 HOH TIP . E 4 HOH A 89 590 590 HOH TIP . E 4 HOH A 90 591 591 HOH TIP . E 4 HOH A 91 592 592 HOH TIP . E 4 HOH A 92 593 593 HOH TIP . E 4 HOH A 93 594 594 HOH TIP . E 4 HOH A 94 595 595 HOH TIP . E 4 HOH A 95 596 596 HOH TIP . E 4 HOH A 96 597 597 HOH TIP . E 4 HOH A 97 598 598 HOH TIP . E 4 HOH A 98 599 599 HOH TIP . E 4 HOH A 99 600 600 HOH TIP . E 4 HOH A 100 601 601 HOH TIP . E 4 HOH A 101 602 602 HOH TIP . E 4 HOH A 102 603 603 HOH TIP . E 4 HOH A 103 604 604 HOH TIP . E 4 HOH A 104 605 605 HOH TIP . E 4 HOH A 105 606 606 HOH TIP . E 4 HOH A 106 607 607 HOH TIP . E 4 HOH A 107 608 608 HOH TIP . E 4 HOH A 108 609 609 HOH TIP . E 4 HOH A 109 610 610 HOH TIP . E 4 HOH A 110 611 611 HOH TIP . E 4 HOH A 111 612 612 HOH TIP . E 4 HOH A 112 613 613 HOH TIP . E 4 HOH A 113 614 614 HOH TIP . E 4 HOH A 114 615 615 HOH TIP . E 4 HOH A 115 616 616 HOH TIP . E 4 HOH A 116 617 617 HOH TIP . E 4 HOH A 117 618 618 HOH TIP . E 4 HOH A 118 619 619 HOH TIP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 80.302 _atom_site.Cartn_y 13.784 _atom_site.Cartn_z 31.219 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 29.73 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 1 #