data_1SON # _model_server_result.job_id uoLMua0Gd8VRl6aQ5HF-ug _model_server_result.datetime_utc '2024-10-12 14:32:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1son # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":453}' # _entry.id 1SON # _exptl.entry_id 1SON _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1SON _cell.length_a 70.5 _cell.length_b 70.5 _cell.length_c 201.2 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SON _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 70.5 70.5 100.6 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 291 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 291 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id S2 _struct_conn.ptnr2_label_comp_id BME _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id BME _struct_conn.ptnr2_auth_seq_id 459 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.024 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1SON _atom_sites.fract_transf_matrix[1][1] 0.014184 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014184 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00497 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AMP A 1 453 453 AMP AMP . C 3 BME A 1 459 459 BME BME . D 4 HOH A 1 501 501 HOH HOH . D 4 HOH A 2 503 503 HOH HOH . D 4 HOH A 3 505 505 HOH HOH . D 4 HOH A 4 507 507 HOH HOH . D 4 HOH A 5 508 508 HOH HOH . D 4 HOH A 6 517 517 HOH HOH . D 4 HOH A 7 520 520 HOH HOH . D 4 HOH A 8 521 521 HOH HOH . D 4 HOH A 9 523 523 HOH HOH . D 4 HOH A 10 524 524 HOH HOH . D 4 HOH A 11 526 526 HOH HOH . D 4 HOH A 12 527 527 HOH HOH . D 4 HOH A 13 529 529 HOH HOH . D 4 HOH A 14 530 530 HOH HOH . D 4 HOH A 15 534 534 HOH HOH . D 4 HOH A 16 539 539 HOH HOH . D 4 HOH A 17 540 540 HOH HOH . D 4 HOH A 18 545 545 HOH HOH . D 4 HOH A 19 549 549 HOH HOH . D 4 HOH A 20 551 551 HOH HOH . D 4 HOH A 21 554 554 HOH HOH . D 4 HOH A 22 558 558 HOH HOH . D 4 HOH A 23 559 559 HOH HOH . D 4 HOH A 24 560 560 HOH HOH . D 4 HOH A 25 562 562 HOH HOH . D 4 HOH A 26 564 564 HOH HOH . D 4 HOH A 27 565 565 HOH HOH . D 4 HOH A 28 574 574 HOH HOH . D 4 HOH A 29 575 575 HOH HOH . D 4 HOH A 30 587 587 HOH HOH . D 4 HOH A 31 588 588 HOH HOH . D 4 HOH A 32 589 589 HOH HOH . D 4 HOH A 33 590 590 HOH HOH . D 4 HOH A 34 592 592 HOH HOH . D 4 HOH A 35 593 593 HOH HOH . D 4 HOH A 36 594 594 HOH HOH . D 4 HOH A 37 596 596 HOH HOH . D 4 HOH A 38 597 597 HOH HOH . D 4 HOH A 39 598 598 HOH HOH . D 4 HOH A 40 599 599 HOH HOH . D 4 HOH A 41 600 600 HOH HOH . D 4 HOH A 42 601 601 HOH HOH . D 4 HOH A 43 602 602 HOH HOH . D 4 HOH A 44 603 603 HOH HOH . D 4 HOH A 45 604 604 HOH HOH . D 4 HOH A 46 605 605 HOH HOH . D 4 HOH A 47 606 606 HOH HOH . D 4 HOH A 48 607 607 HOH HOH . D 4 HOH A 49 608 608 HOH HOH . D 4 HOH A 50 609 609 HOH HOH . D 4 HOH A 51 610 610 HOH HOH . D 4 HOH A 52 611 611 HOH HOH . D 4 HOH A 53 612 612 HOH HOH . D 4 HOH A 54 613 613 HOH HOH . D 4 HOH A 55 614 614 HOH HOH . D 4 HOH A 56 615 615 HOH HOH . D 4 HOH A 57 616 616 HOH HOH . D 4 HOH A 58 618 618 HOH HOH . D 4 HOH A 59 619 619 HOH HOH . D 4 HOH A 60 620 620 HOH HOH . D 4 HOH A 61 621 621 HOH HOH . D 4 HOH A 62 622 622 HOH HOH . D 4 HOH A 63 624 624 HOH HOH . D 4 HOH A 64 626 626 HOH HOH . D 4 HOH A 65 627 627 HOH HOH . D 4 HOH A 66 628 628 HOH HOH . D 4 HOH A 67 629 629 HOH HOH . D 4 HOH A 68 630 630 HOH HOH . D 4 HOH A 69 631 631 HOH HOH . D 4 HOH A 70 632 632 HOH HOH . D 4 HOH A 71 633 633 HOH HOH . D 4 HOH A 72 634 634 HOH HOH . D 4 HOH A 73 635 635 HOH HOH . D 4 HOH A 74 636 636 HOH HOH . D 4 HOH A 75 637 637 HOH HOH . D 4 HOH A 76 638 638 HOH HOH . D 4 HOH A 77 639 639 HOH HOH . D 4 HOH A 78 640 640 HOH HOH . D 4 HOH A 79 641 641 HOH HOH . D 4 HOH A 80 642 642 HOH HOH . D 4 HOH A 81 643 643 HOH HOH . D 4 HOH A 82 644 644 HOH HOH . D 4 HOH A 83 645 645 HOH HOH . D 4 HOH A 84 646 646 HOH HOH . D 4 HOH A 85 647 647 HOH HOH . D 4 HOH A 86 649 649 HOH HOH . D 4 HOH A 87 650 650 HOH HOH . D 4 HOH A 88 651 651 HOH HOH . D 4 HOH A 89 652 652 HOH HOH . D 4 HOH A 90 653 653 HOH HOH . D 4 HOH A 91 654 654 HOH HOH . D 4 HOH A 92 655 655 HOH HOH . D 4 HOH A 93 656 656 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . B 2 6.935 77.512 59.393 1 22.46 ? P AMP 453 A 1 HETATM 2 O O1P AMP . . . B 2 7.277 78.954 59.389 1 17.92 ? O1P AMP 453 A 1 HETATM 3 O O2P AMP . . . B 2 5.538 77.3 59.018 1 33.32 ? O2P AMP 453 A 1 HETATM 4 O O3P AMP . . . B 2 8 76.705 58.761 1 29.7 ? O3P AMP 453 A 1 HETATM 5 O O5' AMP . . . B 2 7.046 77.169 60.905 1 24.34 ? O5' AMP 453 A 1 HETATM 6 C C5' AMP . . . B 2 6.147 76.339 61.582 1 15.81 ? C5' AMP 453 A 1 HETATM 7 C C4' AMP . . . B 2 6.79 75.721 62.814 1 28.72 ? C4' AMP 453 A 1 HETATM 8 O O4' AMP . . . B 2 8.091 75.218 62.465 1 28.72 ? O4' AMP 453 A 1 HETATM 9 C C3' AMP . . . B 2 7.058 76.629 64.037 1 28.72 ? C3' AMP 453 A 1 HETATM 10 O O3' AMP . . . B 2 7.053 75.729 65.173 1 28.72 ? O3' AMP 453 A 1 HETATM 11 C C2' AMP . . . B 2 8.459 77.068 63.716 1 28.72 ? C2' AMP 453 A 1 HETATM 12 O O2' AMP . . . B 2 9.147 77.497 64.84 1 28.72 ? O2' AMP 453 A 1 HETATM 13 C C1' AMP . . . B 2 9.094 75.807 63.28 1 24.57 ? C1' AMP 453 A 1 HETATM 14 N N9 AMP . . . B 2 10.314 76.041 62.526 1 24.58 ? N9 AMP 453 A 1 HETATM 15 C C8 AMP . . . B 2 10.5 76.551 61.307 1 21.57 ? C8 AMP 453 A 1 HETATM 16 N N7 AMP . . . B 2 11.71 76.941 61.029 1 26.6 ? N7 AMP 453 A 1 HETATM 17 C C5 AMP . . . B 2 12.4 76.387 62.058 1 22.39 ? C5 AMP 453 A 1 HETATM 18 C C6 AMP . . . B 2 13.759 76.316 62.308 1 21.67 ? C6 AMP 453 A 1 HETATM 19 N N6 AMP . . . B 2 14.695 76.726 61.403 1 16.37 ? N6 AMP 453 A 1 HETATM 20 N N1 AMP . . . B 2 14.084 75.878 63.529 1 21.05 ? N1 AMP 453 A 1 HETATM 21 C C2 AMP . . . B 2 13.14 75.507 64.384 1 22.7 ? C2 AMP 453 A 1 HETATM 22 N N3 AMP . . . B 2 11.839 75.363 64.191 1 23.61 ? N3 AMP 453 A 1 HETATM 23 C C4 AMP . . . B 2 11.54 75.895 63.008 1 23.68 ? C4 AMP 453 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 23 #