data_1SOO # _model_server_result.job_id Sl1LVOaDh3kpgm9sY7H2Ug _model_server_result.datetime_utc '2024-10-19 01:39:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1soo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":453}' # _entry.id 1SOO # _exptl.entry_id 1SOO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 298.144 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "HYDANTOCIDIN-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1SOO _cell.length_a 70.5 _cell.length_b 70.5 _cell.length_c 198.8 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SOO _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 70.5 70.5 99.4 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 291 A CYS 291 1_555 G S2 BME . A BME 459 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc1 A OD1 ASP 13 A ASP 13 1_555 E NA NA . A NA 547 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc2 A O GLY 40 A GLY 40 1_555 E NA NA . A NA 547 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? metalc ? metalc3 B O2 SO4 . A SO4 442 1_555 E NA NA . A NA 547 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc4 D O2 SO4 . A SO4 443 1_555 E NA NA . A NA 547 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc5 E NA NA . A NA 547 1_555 H O HOH . A HOH 594 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? # _chem_comp.formula 'C7 H11 N2 O9 P' _chem_comp.formula_weight 298.144 _chem_comp.id H5P _chem_comp.mon_nstd_flag . _chem_comp.name "HYDANTOCIDIN-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1SOO _atom_sites.fract_transf_matrix[1][1] 0.014184 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014184 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00503 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 442 442 SO4 SO4 . C 2 SO4 A 1 444 444 SO4 SO4 . D 2 SO4 A 1 443 443 SO4 SO4 . E 3 NA A 1 547 547 NA NA . F 4 H5P A 1 453 453 H5P HNP . G 5 BME A 1 459 459 BME BME . H 6 HOH A 1 501 501 HOH HOH . H 6 HOH A 2 503 503 HOH HOH . H 6 HOH A 3 505 505 HOH HOH . H 6 HOH A 4 506 506 HOH HOH . H 6 HOH A 5 507 507 HOH HOH . H 6 HOH A 6 508 508 HOH HOH . H 6 HOH A 7 509 509 HOH HOH . H 6 HOH A 8 511 511 HOH HOH . H 6 HOH A 9 512 512 HOH HOH . H 6 HOH A 10 513 513 HOH HOH . H 6 HOH A 11 515 515 HOH HOH . H 6 HOH A 12 517 517 HOH HOH . H 6 HOH A 13 518 518 HOH HOH . H 6 HOH A 14 519 519 HOH HOH . H 6 HOH A 15 520 520 HOH HOH . H 6 HOH A 16 521 521 HOH HOH . H 6 HOH A 17 523 523 HOH HOH . H 6 HOH A 18 524 524 HOH HOH . H 6 HOH A 19 525 525 HOH HOH . H 6 HOH A 20 526 526 HOH HOH . H 6 HOH A 21 527 527 HOH HOH . H 6 HOH A 22 528 528 HOH HOH . H 6 HOH A 23 529 529 HOH HOH . H 6 HOH A 24 530 530 HOH HOH . H 6 HOH A 25 531 531 HOH HOH . H 6 HOH A 26 532 532 HOH HOH . H 6 HOH A 27 533 533 HOH HOH . H 6 HOH A 28 534 534 HOH HOH . H 6 HOH A 29 535 535 HOH HOH . H 6 HOH A 30 537 537 HOH HOH . H 6 HOH A 31 538 538 HOH HOH . H 6 HOH A 32 539 539 HOH HOH . H 6 HOH A 33 540 540 HOH HOH . H 6 HOH A 34 541 541 HOH HOH . H 6 HOH A 35 545 545 HOH HOH . H 6 HOH A 36 548 548 HOH HOH . H 6 HOH A 37 549 549 HOH HOH . H 6 HOH A 38 550 550 HOH HOH . H 6 HOH A 39 551 551 HOH HOH . H 6 HOH A 40 553 553 HOH HOH . H 6 HOH A 41 554 554 HOH HOH . H 6 HOH A 42 555 555 HOH HOH . H 6 HOH A 43 556 556 HOH HOH . H 6 HOH A 44 557 557 HOH HOH . H 6 HOH A 45 558 558 HOH HOH . H 6 HOH A 46 559 559 HOH HOH . H 6 HOH A 47 560 560 HOH HOH . H 6 HOH A 48 561 561 HOH HOH . H 6 HOH A 49 562 562 HOH HOH . H 6 HOH A 50 563 563 HOH HOH . H 6 HOH A 51 564 564 HOH HOH . H 6 HOH A 52 565 565 HOH HOH . H 6 HOH A 53 566 566 HOH HOH . H 6 HOH A 54 567 567 HOH HOH . H 6 HOH A 55 569 569 HOH HOH . H 6 HOH A 56 570 570 HOH HOH . H 6 HOH A 57 573 573 HOH HOH . H 6 HOH A 58 574 574 HOH HOH . H 6 HOH A 59 575 575 HOH HOH . H 6 HOH A 60 577 577 HOH HOH . H 6 HOH A 61 578 578 HOH HOH . H 6 HOH A 62 579 579 HOH HOH . H 6 HOH A 63 580 580 HOH HOH . H 6 HOH A 64 581 581 HOH HOH . H 6 HOH A 65 582 582 HOH HOH . H 6 HOH A 66 583 583 HOH HOH . H 6 HOH A 67 584 584 HOH HOH . H 6 HOH A 68 585 585 HOH HOH . H 6 HOH A 69 586 586 HOH HOH . H 6 HOH A 70 587 587 HOH HOH . H 6 HOH A 71 588 588 HOH HOH . H 6 HOH A 72 589 589 HOH HOH . H 6 HOH A 73 590 590 HOH HOH . H 6 HOH A 74 591 591 HOH HOH . H 6 HOH A 75 592 592 HOH HOH . H 6 HOH A 76 593 593 HOH HOH . H 6 HOH A 77 594 594 HOH HOH . H 6 HOH A 78 595 595 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 H5P . . . F 4 10.059 75.859 62.865 1 18.73 ? C2 H5P 453 A 1 HETATM 2 O O2 H5P . . . F 4 10.093 75.343 63.992 1 18.73 ? O2 H5P 453 A 1 HETATM 3 N N3 H5P . . . F 4 11.232 76.085 62.17 1 18.73 ? N3 H5P 453 A 1 HETATM 4 C C4 H5P . . . F 4 10.862 76.657 60.979 1 18.73 ? C4 H5P 453 A 1 HETATM 5 O O4 H5P . . . F 4 11.595 77.023 60.127 1 18.73 ? O4 H5P 453 A 1 HETATM 6 N N5 H5P . . . F 4 9.487 76.78 60.943 1 18.73 ? N5 H5P 453 A 1 HETATM 7 C C1' H5P . . . F 4 8.922 76.306 62.097 1 18.73 ? C1' H5P 453 A 1 HETATM 8 C C2' H5P . . . F 4 8.127 77.514 62.641 1 18.88 ? C2' H5P 453 A 1 HETATM 9 O O2' H5P . . . F 4 8.858 78.188 63.671 1 18.88 ? O2' H5P 453 A 1 HETATM 10 C C3' H5P . . . F 4 6.854 76.876 63.248 1 18.88 ? C3' H5P 453 A 1 HETATM 11 O O3' H5P . . . F 4 7.191 76.244 64.488 1 18.88 ? O3' H5P 453 A 1 HETATM 12 C C4' H5P . . . F 4 6.546 75.831 62.188 1 18.88 ? C4' H5P 453 A 1 HETATM 13 O O4' H5P . . . F 4 7.841 75.33 61.836 1 18.88 ? O4' H5P 453 A 1 HETATM 14 C C5' H5P . . . F 4 5.862 76.415 60.955 1 13.11 ? C5' H5P 453 A 1 HETATM 15 O O5' H5P . . . F 4 6.631 77.465 60.394 1 13.11 ? O5' H5P 453 A 1 HETATM 16 P P H5P . . . F 4 6.779 77.694 58.804 1 13.11 ? P H5P 453 A 1 HETATM 17 O O1P H5P . . . F 4 7.957 76.968 58.332 1 13.11 ? O1P H5P 453 A 1 HETATM 18 O O2P H5P . . . F 4 7.021 79.165 58.614 1 13.11 ? O2P H5P 453 A 1 HETATM 19 O O3P H5P . . . F 4 5.608 77.268 58.068 1 13.11 ? O3P H5P 453 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 19 #