data_1SP5
#
_model_server_result.job_id            '_SmmYjmCfUhc4zF4X0uZog' 
_model_server_result.datetime_utc      '2024-11-28 15:09:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1sp5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":501}' 
#
_entry.id    1SP5 
#
_exptl.entry_id    1SP5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1SP5 
_cell.length_a            57.765 
_cell.length_b            86.284 
_cell.length_c            45.834 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1SP5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             H 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 67 A CYS 67 1_555 F S2 BME . A BME 401 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.029 ? 
covale ? covale2 B SG CYS 67 B CYS 67 1_555 J S2 BME . B BME 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 92 n n 
S C1 DMS sing 93 n n 
S C2 DMS sing 94 n n 
C1 H11 DMS sing 95 n n 
C1 H12 DMS sing 96 n n 
C1 H13 DMS sing 97 n n 
C2 H21 DMS sing 98 n n 
C2 H22 DMS sing 99 n n 
C2 H23 DMS sing 100 n n 
#
_atom_sites.entry_id                     1SP5 
_atom_sites.fract_transf_matrix[1][1]    0.017312 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01159 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021818 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 CL A 1 601 601 CL CL . 
E 3 CL A 1 602 602 CL CL . 
F 4 BME A 1 401 401 BME BME . 
G 4 BME A 1 403 403 BME BME . 
H 5 DMS A 1 501 501 DMS DMS . 
I 3 CL B 1 603 603 CL CL . 
J 4 BME B 1 402 402 BME BME . 
K 6 HOH A 1 603 2 HOH WAT . 
K 6 HOH A 2 604 5 HOH WAT . 
K 6 HOH A 3 605 6 HOH WAT . 
K 6 HOH A 4 606 8 HOH WAT . 
K 6 HOH A 5 607 11 HOH WAT . 
K 6 HOH A 6 608 12 HOH WAT . 
K 6 HOH A 7 609 13 HOH WAT . 
K 6 HOH A 8 610 18 HOH WAT . 
K 6 HOH A 9 611 20 HOH WAT . 
K 6 HOH A 10 612 21 HOH WAT . 
K 6 HOH A 11 613 23 HOH WAT . 
K 6 HOH A 12 614 24 HOH WAT . 
K 6 HOH A 13 615 25 HOH WAT . 
K 6 HOH A 14 616 27 HOH WAT . 
K 6 HOH A 15 617 28 HOH WAT . 
K 6 HOH A 16 618 29 HOH WAT . 
K 6 HOH A 17 619 30 HOH WAT . 
K 6 HOH A 18 620 31 HOH WAT . 
K 6 HOH A 19 621 32 HOH WAT . 
K 6 HOH A 20 622 34 HOH WAT . 
K 6 HOH A 21 623 35 HOH WAT . 
K 6 HOH A 22 624 36 HOH WAT . 
K 6 HOH A 23 625 38 HOH WAT . 
K 6 HOH A 24 626 39 HOH WAT . 
K 6 HOH A 25 627 40 HOH WAT . 
K 6 HOH A 26 628 42 HOH WAT . 
K 6 HOH A 27 629 44 HOH WAT . 
K 6 HOH A 28 630 46 HOH WAT . 
K 6 HOH A 29 631 47 HOH WAT . 
K 6 HOH A 30 632 48 HOH WAT . 
K 6 HOH A 31 633 50 HOH WAT . 
K 6 HOH A 32 634 51 HOH WAT . 
K 6 HOH A 33 635 53 HOH WAT . 
K 6 HOH A 34 636 54 HOH WAT . 
K 6 HOH A 35 637 55 HOH WAT . 
K 6 HOH A 36 638 58 HOH WAT . 
K 6 HOH A 37 639 59 HOH WAT . 
K 6 HOH A 38 640 60 HOH WAT . 
K 6 HOH A 39 641 62 HOH WAT . 
K 6 HOH A 40 642 64 HOH WAT . 
K 6 HOH A 41 643 65 HOH WAT . 
K 6 HOH A 42 644 67 HOH WAT . 
K 6 HOH A 43 645 68 HOH WAT . 
K 6 HOH A 44 646 69 HOH WAT . 
K 6 HOH A 45 647 70 HOH WAT . 
K 6 HOH A 46 648 71 HOH WAT . 
K 6 HOH A 47 649 72 HOH WAT . 
K 6 HOH A 48 650 73 HOH WAT . 
K 6 HOH A 49 651 74 HOH WAT . 
K 6 HOH A 50 652 79 HOH WAT . 
K 6 HOH A 51 653 81 HOH WAT . 
K 6 HOH A 52 654 83 HOH WAT . 
K 6 HOH A 53 655 85 HOH WAT . 
K 6 HOH A 54 656 88 HOH WAT . 
K 6 HOH A 55 657 89 HOH WAT . 
K 6 HOH A 56 658 91 HOH WAT . 
K 6 HOH A 57 659 92 HOH WAT . 
K 6 HOH A 58 660 95 HOH WAT . 
K 6 HOH A 59 661 96 HOH WAT . 
K 6 HOH A 60 662 97 HOH WAT . 
K 6 HOH A 61 663 100 HOH WAT . 
K 6 HOH A 62 664 104 HOH WAT . 
K 6 HOH A 63 665 105 HOH WAT . 
K 6 HOH A 64 666 106 HOH WAT . 
K 6 HOH A 65 667 108 HOH WAT . 
K 6 HOH A 66 668 111 HOH WAT . 
K 6 HOH A 67 669 113 HOH WAT . 
K 6 HOH A 68 670 115 HOH WAT . 
K 6 HOH A 69 671 118 HOH WAT . 
K 6 HOH A 70 672 119 HOH WAT . 
K 6 HOH A 71 673 120 HOH WAT . 
K 6 HOH A 72 674 121 HOH WAT . 
K 6 HOH A 73 675 124 HOH WAT . 
K 6 HOH A 74 676 125 HOH WAT . 
K 6 HOH A 75 677 127 HOH WAT . 
K 6 HOH A 76 678 128 HOH WAT . 
K 6 HOH A 77 679 133 HOH WAT . 
L 6 HOH B 1 604 3 HOH WAT . 
L 6 HOH B 2 605 4 HOH WAT . 
L 6 HOH B 3 606 7 HOH WAT . 
L 6 HOH B 4 607 9 HOH WAT . 
L 6 HOH B 5 608 10 HOH WAT . 
L 6 HOH B 6 609 14 HOH WAT . 
L 6 HOH B 7 610 15 HOH WAT . 
L 6 HOH B 8 611 17 HOH WAT . 
L 6 HOH B 9 612 19 HOH WAT . 
L 6 HOH B 10 613 22 HOH WAT . 
L 6 HOH B 11 614 26 HOH WAT . 
L 6 HOH B 12 615 33 HOH WAT . 
L 6 HOH B 13 616 37 HOH WAT . 
L 6 HOH B 14 617 41 HOH WAT . 
L 6 HOH B 15 618 43 HOH WAT . 
L 6 HOH B 16 619 45 HOH WAT . 
L 6 HOH B 17 620 49 HOH WAT . 
L 6 HOH B 18 621 52 HOH WAT . 
L 6 HOH B 19 622 57 HOH WAT . 
L 6 HOH B 20 623 61 HOH WAT . 
L 6 HOH B 21 624 63 HOH WAT . 
L 6 HOH B 22 625 66 HOH WAT . 
L 6 HOH B 23 626 75 HOH WAT . 
L 6 HOH B 24 627 76 HOH WAT . 
L 6 HOH B 25 628 77 HOH WAT . 
L 6 HOH B 26 629 78 HOH WAT . 
L 6 HOH B 27 630 80 HOH WAT . 
L 6 HOH B 28 631 82 HOH WAT . 
L 6 HOH B 29 632 84 HOH WAT . 
L 6 HOH B 30 633 86 HOH WAT . 
L 6 HOH B 31 634 87 HOH WAT . 
L 6 HOH B 32 635 90 HOH WAT . 
L 6 HOH B 33 636 93 HOH WAT . 
L 6 HOH B 34 637 94 HOH WAT . 
L 6 HOH B 35 638 98 HOH WAT . 
L 6 HOH B 36 639 99 HOH WAT . 
L 6 HOH B 37 640 101 HOH WAT . 
L 6 HOH B 38 641 102 HOH WAT . 
L 6 HOH B 39 642 103 HOH WAT . 
L 6 HOH B 40 643 107 HOH WAT . 
L 6 HOH B 41 644 109 HOH WAT . 
L 6 HOH B 42 645 110 HOH WAT . 
L 6 HOH B 43 646 112 HOH WAT . 
L 6 HOH B 44 647 114 HOH WAT . 
L 6 HOH B 45 648 116 HOH WAT . 
L 6 HOH B 46 649 117 HOH WAT . 
L 6 HOH B 47 650 122 HOH WAT . 
L 6 HOH B 48 651 123 HOH WAT . 
L 6 HOH B 49 652 126 HOH WAT . 
L 6 HOH B 50 653 129 HOH WAT . 
L 6 HOH B 51 654 130 HOH WAT . 
L 6 HOH B 52 655 131 HOH WAT . 
L 6 HOH B 53 656 132 HOH WAT . 
L 6 HOH B 54 657 134 HOH WAT . 
L 6 HOH B 55 658 135 HOH WAT . 
M 6 HOH I 1 1 1 HOH WAT . 
M 6 HOH I 2 16 16 HOH WAT . 
M 6 HOH I 3 56 56 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . H 5 9.299 6.794 -2.121 1 40.31 ? S DMS 501 A 1 
HETATM 2 O O DMS . . . H 5 9.252 6.238 -3.525 1 35.4 ? O DMS 501 A 1 
HETATM 3 C C1 DMS . . . H 5 10.852 6.277 -1.458 1 35.81 ? C1 DMS 501 A 1 
HETATM 4 C C2 DMS . . . H 5 9.572 8.551 -2.32 1 34.94 ? C2 DMS 501 A 1 
#
_model_server_stats.io_time_ms              33 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           4 
#