data_1SPB
#
_model_server_result.job_id            34M0Muj6qyCxpxKRcdKhog 
_model_server_result.datetime_utc      '2024-12-26 23:12:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1spb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":297}' 
#
_entry.id    1SPB 
#
_exptl.entry_id    1SPB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1SPB 
_cell.length_a            74.1 
_cell.length_b            77.85 
_cell.length_c            57.65 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1SPB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B O GLY 160 S GLY 169 1_555 C NA NA . S NA 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? 
metalc ? metalc2 B O TYR 162 S TYR 171 1_555 C NA NA . S NA 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? 
metalc ? metalc3 B O VAL 165 S VAL 174 1_555 C NA NA . S NA 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? 
metalc ? metalc4 B OD2 ASP 188 S ASP 197 1_555 C NA NA . S NA 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.953 ? 
metalc ? metalc5 C NA NA . S NA 297 1_555 E O HOH . S HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.84 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1SPB 
_atom_sites.fract_transf_matrix[1][1]    0.013495 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012845 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017346 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NA S 1 297 297 NA NA . 
D 4 HOH P 1 312 312 HOH HOH . 
D 4 HOH P 2 315 315 HOH HOH . 
D 4 HOH P 3 322 322 HOH HOH . 
D 4 HOH P 4 326 326 HOH HOH . 
D 4 HOH P 5 330 330 HOH HOH . 
D 4 HOH P 6 344 344 HOH HOH . 
D 4 HOH P 7 346 346 HOH HOH . 
D 4 HOH P 8 348 348 HOH HOH . 
D 4 HOH P 9 355 355 HOH HOH . 
D 4 HOH P 10 360 360 HOH HOH . 
D 4 HOH P 11 362 362 HOH HOH . 
D 4 HOH P 12 365 365 HOH HOH . 
D 4 HOH P 13 370 370 HOH HOH . 
D 4 HOH P 14 375 375 HOH HOH . 
D 4 HOH P 15 378 378 HOH HOH . 
D 4 HOH P 16 381 381 HOH HOH . 
D 4 HOH P 17 385 385 HOH HOH . 
D 4 HOH P 18 401 401 HOH HOH . 
D 4 HOH P 19 403 403 HOH HOH . 
D 4 HOH P 20 406 406 HOH HOH . 
D 4 HOH P 21 407 407 HOH HOH . 
D 4 HOH P 22 412 412 HOH HOH . 
D 4 HOH P 23 413 413 HOH HOH . 
D 4 HOH P 24 414 414 HOH HOH . 
D 4 HOH P 25 417 417 HOH HOH . 
D 4 HOH P 26 419 419 HOH HOH . 
D 4 HOH P 27 420 420 HOH HOH . 
D 4 HOH P 28 422 422 HOH HOH . 
D 4 HOH P 29 427 427 HOH HOH . 
D 4 HOH P 30 428 428 HOH HOH . 
D 4 HOH P 31 430 430 HOH HOH . 
D 4 HOH P 32 435 435 HOH HOH . 
D 4 HOH P 33 441 441 HOH HOH . 
D 4 HOH P 34 445 445 HOH HOH . 
D 4 HOH P 35 452 452 HOH HOH . 
D 4 HOH P 36 455 455 HOH HOH . 
D 4 HOH P 37 456 456 HOH HOH . 
D 4 HOH P 38 458 458 HOH HOH . 
D 4 HOH P 39 462 462 HOH HOH . 
D 4 HOH P 40 464 464 HOH HOH . 
D 4 HOH P 41 465 465 HOH HOH . 
D 4 HOH P 42 478 478 HOH HOH . 
D 4 HOH P 43 489 489 HOH HOH . 
D 4 HOH P 44 501 501 HOH HOH . 
D 4 HOH P 45 517 517 HOH HOH . 
D 4 HOH P 46 525 525 HOH HOH . 
D 4 HOH P 47 532 532 HOH HOH . 
D 4 HOH P 48 534 534 HOH HOH . 
D 4 HOH P 49 535 535 HOH HOH . 
D 4 HOH P 50 539 539 HOH HOH . 
D 4 HOH P 51 540 540 HOH HOH . 
D 4 HOH P 52 543 543 HOH HOH . 
D 4 HOH P 53 544 544 HOH HOH . 
D 4 HOH P 54 548 548 HOH HOH . 
D 4 HOH P 55 553 553 HOH HOH . 
E 4 HOH S 1 301 301 HOH HOH . 
E 4 HOH S 2 302 302 HOH HOH . 
E 4 HOH S 3 303 303 HOH HOH . 
E 4 HOH S 4 304 304 HOH HOH . 
E 4 HOH S 5 305 305 HOH HOH . 
E 4 HOH S 6 306 306 HOH HOH . 
E 4 HOH S 7 307 307 HOH HOH . 
E 4 HOH S 8 308 308 HOH HOH . 
E 4 HOH S 9 309 309 HOH HOH . 
E 4 HOH S 10 310 310 HOH HOH . 
E 4 HOH S 11 311 311 HOH HOH . 
E 4 HOH S 12 313 313 HOH HOH . 
E 4 HOH S 13 314 314 HOH HOH . 
E 4 HOH S 14 316 316 HOH HOH . 
E 4 HOH S 15 317 317 HOH HOH . 
E 4 HOH S 16 318 318 HOH HOH . 
E 4 HOH S 17 319 319 HOH HOH . 
E 4 HOH S 18 320 320 HOH HOH . 
E 4 HOH S 19 321 321 HOH HOH . 
E 4 HOH S 20 323 323 HOH HOH . 
E 4 HOH S 21 324 324 HOH HOH . 
E 4 HOH S 22 325 325 HOH HOH . 
E 4 HOH S 23 327 327 HOH HOH . 
E 4 HOH S 24 328 328 HOH HOH . 
E 4 HOH S 25 329 329 HOH HOH . 
E 4 HOH S 26 331 331 HOH HOH . 
E 4 HOH S 27 332 332 HOH HOH . 
E 4 HOH S 28 333 333 HOH HOH . 
E 4 HOH S 29 334 334 HOH HOH . 
E 4 HOH S 30 335 335 HOH HOH . 
E 4 HOH S 31 336 336 HOH HOH . 
E 4 HOH S 32 337 337 HOH HOH . 
E 4 HOH S 33 338 338 HOH HOH . 
E 4 HOH S 34 339 339 HOH HOH . 
E 4 HOH S 35 340 340 HOH HOH . 
E 4 HOH S 36 341 341 HOH HOH . 
E 4 HOH S 37 342 342 HOH HOH . 
E 4 HOH S 38 343 343 HOH HOH . 
E 4 HOH S 39 345 345 HOH HOH . 
E 4 HOH S 40 347 347 HOH HOH . 
E 4 HOH S 41 349 349 HOH HOH . 
E 4 HOH S 42 350 350 HOH HOH . 
E 4 HOH S 43 351 351 HOH HOH . 
E 4 HOH S 44 352 352 HOH HOH . 
E 4 HOH S 45 353 353 HOH HOH . 
E 4 HOH S 46 354 354 HOH HOH . 
E 4 HOH S 47 356 356 HOH HOH . 
E 4 HOH S 48 357 357 HOH HOH . 
E 4 HOH S 49 358 358 HOH HOH . 
E 4 HOH S 50 359 359 HOH HOH . 
E 4 HOH S 51 361 361 HOH HOH . 
E 4 HOH S 52 363 363 HOH HOH . 
E 4 HOH S 53 364 364 HOH HOH . 
E 4 HOH S 54 366 366 HOH HOH . 
E 4 HOH S 55 367 367 HOH HOH . 
E 4 HOH S 56 368 368 HOH HOH . 
E 4 HOH S 57 369 369 HOH HOH . 
E 4 HOH S 58 371 371 HOH HOH . 
E 4 HOH S 59 372 372 HOH HOH . 
E 4 HOH S 60 373 373 HOH HOH . 
E 4 HOH S 61 374 374 HOH HOH . 
E 4 HOH S 62 376 376 HOH HOH . 
E 4 HOH S 63 377 377 HOH HOH . 
E 4 HOH S 64 379 379 HOH HOH . 
E 4 HOH S 65 380 380 HOH HOH . 
E 4 HOH S 66 382 382 HOH HOH . 
E 4 HOH S 67 383 383 HOH HOH . 
E 4 HOH S 68 384 384 HOH HOH . 
E 4 HOH S 69 386 386 HOH HOH . 
E 4 HOH S 70 387 387 HOH HOH . 
E 4 HOH S 71 388 388 HOH HOH . 
E 4 HOH S 72 389 389 HOH HOH . 
E 4 HOH S 73 390 390 HOH HOH . 
E 4 HOH S 74 391 391 HOH HOH . 
E 4 HOH S 75 392 392 HOH HOH . 
E 4 HOH S 76 393 393 HOH HOH . 
E 4 HOH S 77 395 395 HOH HOH . 
E 4 HOH S 78 396 396 HOH HOH . 
E 4 HOH S 79 397 397 HOH HOH . 
E 4 HOH S 80 398 398 HOH HOH . 
E 4 HOH S 81 399 399 HOH HOH . 
E 4 HOH S 82 400 400 HOH HOH . 
E 4 HOH S 83 402 402 HOH HOH . 
E 4 HOH S 84 404 404 HOH HOH . 
E 4 HOH S 85 405 405 HOH HOH . 
E 4 HOH S 86 408 408 HOH HOH . 
E 4 HOH S 87 409 409 HOH HOH . 
E 4 HOH S 88 410 410 HOH HOH . 
E 4 HOH S 89 411 411 HOH HOH . 
E 4 HOH S 90 415 415 HOH HOH . 
E 4 HOH S 91 416 416 HOH HOH . 
E 4 HOH S 92 418 418 HOH HOH . 
E 4 HOH S 93 421 421 HOH HOH . 
E 4 HOH S 94 423 423 HOH HOH . 
E 4 HOH S 95 424 424 HOH HOH . 
E 4 HOH S 96 425 425 HOH HOH . 
E 4 HOH S 97 426 426 HOH HOH . 
E 4 HOH S 98 429 429 HOH HOH . 
E 4 HOH S 99 431 431 HOH HOH . 
E 4 HOH S 100 432 432 HOH HOH . 
E 4 HOH S 101 433 433 HOH HOH . 
E 4 HOH S 102 434 434 HOH HOH . 
E 4 HOH S 103 436 436 HOH HOH . 
E 4 HOH S 104 438 438 HOH HOH . 
E 4 HOH S 105 439 439 HOH HOH . 
E 4 HOH S 106 440 440 HOH HOH . 
E 4 HOH S 107 442 442 HOH HOH . 
E 4 HOH S 108 443 443 HOH HOH . 
E 4 HOH S 109 444 444 HOH HOH . 
E 4 HOH S 110 446 446 HOH HOH . 
E 4 HOH S 111 447 447 HOH HOH . 
E 4 HOH S 112 448 448 HOH HOH . 
E 4 HOH S 113 449 449 HOH HOH . 
E 4 HOH S 114 450 450 HOH HOH . 
E 4 HOH S 115 451 451 HOH HOH . 
E 4 HOH S 116 453 453 HOH HOH . 
E 4 HOH S 117 454 454 HOH HOH . 
E 4 HOH S 118 457 457 HOH HOH . 
E 4 HOH S 119 459 459 HOH HOH . 
E 4 HOH S 120 460 460 HOH HOH . 
E 4 HOH S 121 461 461 HOH HOH . 
E 4 HOH S 122 463 463 HOH HOH . 
E 4 HOH S 123 466 466 HOH HOH . 
E 4 HOH S 124 467 467 HOH HOH . 
E 4 HOH S 125 468 468 HOH HOH . 
E 4 HOH S 126 469 469 HOH HOH . 
E 4 HOH S 127 470 470 HOH HOH . 
E 4 HOH S 128 471 471 HOH HOH . 
E 4 HOH S 129 472 472 HOH HOH . 
E 4 HOH S 130 473 473 HOH HOH . 
E 4 HOH S 131 474 474 HOH HOH . 
E 4 HOH S 132 475 475 HOH HOH . 
E 4 HOH S 133 476 476 HOH HOH . 
E 4 HOH S 134 477 477 HOH HOH . 
E 4 HOH S 135 479 479 HOH HOH . 
E 4 HOH S 136 480 480 HOH HOH . 
E 4 HOH S 137 481 481 HOH HOH . 
E 4 HOH S 138 482 482 HOH HOH . 
E 4 HOH S 139 483 483 HOH HOH . 
E 4 HOH S 140 484 484 HOH HOH . 
E 4 HOH S 141 485 485 HOH HOH . 
E 4 HOH S 142 486 486 HOH HOH . 
E 4 HOH S 143 487 487 HOH HOH . 
E 4 HOH S 144 488 488 HOH HOH . 
E 4 HOH S 145 490 490 HOH HOH . 
E 4 HOH S 146 491 491 HOH HOH . 
E 4 HOH S 147 492 492 HOH HOH . 
E 4 HOH S 148 493 493 HOH HOH . 
E 4 HOH S 149 494 494 HOH HOH . 
E 4 HOH S 150 495 495 HOH HOH . 
E 4 HOH S 151 496 496 HOH HOH . 
E 4 HOH S 152 497 497 HOH HOH . 
E 4 HOH S 153 498 498 HOH HOH . 
E 4 HOH S 154 499 499 HOH HOH . 
E 4 HOH S 155 500 500 HOH HOH . 
E 4 HOH S 156 502 502 HOH HOH . 
E 4 HOH S 157 503 503 HOH HOH . 
E 4 HOH S 158 504 504 HOH HOH . 
E 4 HOH S 159 505 505 HOH HOH . 
E 4 HOH S 160 506 506 HOH HOH . 
E 4 HOH S 161 507 507 HOH HOH . 
E 4 HOH S 162 508 508 HOH HOH . 
E 4 HOH S 163 510 510 HOH HOH . 
E 4 HOH S 164 511 511 HOH HOH . 
E 4 HOH S 165 512 512 HOH HOH . 
E 4 HOH S 166 513 513 HOH HOH . 
E 4 HOH S 167 514 514 HOH HOH . 
E 4 HOH S 168 515 515 HOH HOH . 
E 4 HOH S 169 516 516 HOH HOH . 
E 4 HOH S 170 518 518 HOH HOH . 
E 4 HOH S 171 520 520 HOH HOH . 
E 4 HOH S 172 521 521 HOH HOH . 
E 4 HOH S 173 522 522 HOH HOH . 
E 4 HOH S 174 523 523 HOH HOH . 
E 4 HOH S 175 524 524 HOH HOH . 
E 4 HOH S 176 526 526 HOH HOH . 
E 4 HOH S 177 527 527 HOH HOH . 
E 4 HOH S 178 528 528 HOH HOH . 
E 4 HOH S 179 529 529 HOH HOH . 
E 4 HOH S 180 530 530 HOH HOH . 
E 4 HOH S 181 531 531 HOH HOH . 
E 4 HOH S 182 533 533 HOH HOH . 
E 4 HOH S 183 536 536 HOH HOH . 
E 4 HOH S 184 537 537 HOH HOH . 
E 4 HOH S 185 538 538 HOH HOH . 
E 4 HOH S 186 541 541 HOH HOH . 
E 4 HOH S 187 542 542 HOH HOH . 
E 4 HOH S 188 545 545 HOH HOH . 
E 4 HOH S 189 546 546 HOH HOH . 
E 4 HOH S 190 547 547 HOH HOH . 
E 4 HOH S 191 549 549 HOH HOH . 
E 4 HOH S 192 550 550 HOH HOH . 
E 4 HOH S 193 551 551 HOH HOH . 
E 4 HOH S 194 554 554 HOH HOH . 
E 4 HOH S 195 555 555 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               8.599 
_atom_site.Cartn_y               8.824 
_atom_site.Cartn_z               7.695 
_atom_site.occupancy             0.92 
_atom_site.B_iso_or_equiv        11.21 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           297 
_atom_site.auth_asym_id          S 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              60 
_model_server_stats.parse_time_ms           32 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           344 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#