data_1SPD # _model_server_result.job_id pWfJbTsaAKdK8nFJiT5oqA _model_server_result.datetime_utc '2024-11-02 01:29:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1spd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":154}' # _entry.id 1SPD # _exptl.entry_id 1SPD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 63.546 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COPPER (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1SPD _cell.length_a 113.57 _cell.length_b 113.57 _cell.length_c 71.55 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SPD _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 58 A CYS 57 1_555 A SG CYS 147 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? disulf ? disulf2 B SG CYS 58 B CYS 57 1_555 B SG CYS 147 B CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? covale ? covale1 A CH3 ACE 1 A ACE 0 1_555 A N ALA 2 A ALA 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.493 ? covale ? covale2 A C ACE 1 A ACE 0 1_555 A N ALA 2 A ALA 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.847 ? covale ? covale3 B CH3 ACE 1 B ACE 0 1_555 B N ALA 2 B ALA 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.579 ? covale ? covale4 B C ACE 1 B ACE 0 1_555 B N ALA 2 B ALA 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.802 ? metalc ? metalc1 A ND1 HIS 47 A HIS 46 1_555 C CU CU . A CU 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc2 A NE2 HIS 49 A HIS 48 1_555 C CU CU . A CU 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc3 A NE2 HIS 64 A HIS 63 1_555 C CU CU . A CU 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc4 A ND1 HIS 64 A HIS 63 1_555 D ZN ZN . A ZN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc5 A ND1 HIS 72 A HIS 71 1_555 D ZN ZN . A ZN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc6 A ND1 HIS 81 A HIS 80 1_555 D ZN ZN . A ZN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc7 A OD2 ASP 84 A ASP 83 1_555 D ZN ZN . A ZN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc8 A NE2 HIS 121 A HIS 120 1_555 C CU CU . A CU 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc9 B ND1 HIS 47 B HIS 46 1_555 E CU CU . B CU 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc10 B NE2 HIS 49 B HIS 48 1_555 E CU CU . B CU 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc11 B NE2 HIS 64 B HIS 63 1_555 E CU CU . B CU 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc12 B ND1 HIS 64 B HIS 63 1_555 F ZN ZN . B ZN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc13 B ND1 HIS 72 B HIS 71 1_555 F ZN ZN . B ZN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc14 B ND1 HIS 81 B HIS 80 1_555 F ZN ZN . B ZN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc15 B OD2 ASP 84 B ASP 83 1_555 F ZN ZN . B ZN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc16 B NE2 HIS 121 B HIS 120 1_555 E CU CU . B CU 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? # _chem_comp.formula 'Cu 2' _chem_comp.formula_weight 63.546 _chem_comp.id CU _chem_comp.mon_nstd_flag . _chem_comp.name 'COPPER (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1SPD _atom_sites.fract_transf_matrix[1][1] 0.008805 _atom_sites.fract_transf_matrix[1][2] 0.005084 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010167 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013976 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CU A 1 154 154 CU CU . D 3 ZN A 1 155 155 ZN ZN . E 2 CU B 1 154 154 CU CU . F 3 ZN B 1 155 155 ZN ZN . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CU _atom_site.label_atom_id CU _atom_site.label_comp_id CU _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x 45.274 _atom_site.Cartn_y -19.015 _atom_site.Cartn_z 9.113 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 13.78 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CU _atom_site.auth_comp_id CU _atom_site.auth_seq_id 154 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #