data_1SPE
#
_model_server_result.job_id            i5o46Z5hy_kFdVOc4OyGzg 
_model_server_result.datetime_utc      '2024-10-10 17:11:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1spe 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":155}' 
#
_entry.id    1SPE 
#
_exptl.entry_id    1SPE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          106.39 
_cell.angle_gamma         90 
_cell.entry_id            1SPE 
_cell.length_a            64.817 
_cell.length_b            30.756 
_cell.length_c            35.186 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1SPE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 93 A HIS 93 1_555 C FE HEM . A HEM 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? 
metalc ? metalc2 C FE HEM . A HEM 155 1_555 D C CMO . A CMO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.908 ? 
metalc ? metalc3 C FE HEM . A HEM 155 1_555 D O CMO . A CMO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.805 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 117 n n 
CHA C4D HEM doub 118 n n 
CHA HHA HEM sing 119 n n 
CHB C4A HEM sing 120 n n 
CHB C1B HEM doub 121 n n 
CHB HHB HEM sing 122 n n 
CHC C4B HEM sing 123 n n 
CHC C1C HEM doub 124 n n 
CHC HHC HEM sing 125 n n 
CHD C4C HEM doub 126 n n 
CHD C1D HEM sing 127 n n 
CHD HHD HEM sing 128 n n 
C1A C2A HEM doub 129 n y 
C1A NA HEM sing 130 n y 
C2A C3A HEM sing 131 n y 
C2A CAA HEM sing 132 n n 
C3A C4A HEM doub 133 n y 
C3A CMA HEM sing 134 n n 
C4A NA HEM sing 135 n y 
CMA HMA HEM sing 136 n n 
CMA HMAA HEM sing 137 n n 
CMA HMAB HEM sing 138 n n 
CAA CBA HEM sing 139 n n 
CAA HAA HEM sing 140 n n 
CAA HAAA HEM sing 141 n n 
CBA CGA HEM sing 142 n n 
CBA HBA HEM sing 143 n n 
CBA HBAA HEM sing 144 n n 
CGA O1A HEM doub 145 n n 
CGA O2A HEM sing 146 n n 
C1B C2B HEM sing 147 n n 
C1B NB HEM sing 148 n n 
C2B C3B HEM doub 149 n n 
C2B CMB HEM sing 150 n n 
C3B C4B HEM sing 151 n n 
C3B CAB HEM sing 152 n n 
C4B NB HEM doub 153 n n 
CMB HMB HEM sing 154 n n 
CMB HMBA HEM sing 155 n n 
CMB HMBB HEM sing 156 n n 
CAB CBB HEM doub 157 n n 
CAB HAB HEM sing 158 n n 
CBB HBB HEM sing 159 n n 
CBB HBBA HEM sing 160 n n 
C1C C2C HEM sing 161 n y 
C1C NC HEM sing 162 n y 
C2C C3C HEM doub 163 n y 
C2C CMC HEM sing 164 n n 
C3C C4C HEM sing 165 n y 
C3C CAC HEM sing 166 n n 
C4C NC HEM sing 167 n y 
CMC HMC HEM sing 168 n n 
CMC HMCA HEM sing 169 n n 
CMC HMCB HEM sing 170 n n 
CAC CBC HEM doub 171 n n 
CAC HAC HEM sing 172 n n 
CBC HBC HEM sing 173 n n 
CBC HBCA HEM sing 174 n n 
C1D C2D HEM sing 175 n n 
C1D ND HEM doub 176 n n 
C2D C3D HEM doub 177 n n 
C2D CMD HEM sing 178 n n 
C3D C4D HEM sing 179 n n 
C3D CAD HEM sing 180 n n 
C4D ND HEM sing 181 n n 
CMD HMD HEM sing 182 n n 
CMD HMDA HEM sing 183 n n 
CMD HMDB HEM sing 184 n n 
CAD CBD HEM sing 185 n n 
CAD HAD HEM sing 186 n n 
CAD HADA HEM sing 187 n n 
CBD CGD HEM sing 188 n n 
CBD HBD HEM sing 189 n n 
CBD HBDA HEM sing 190 n n 
CGD O1D HEM doub 191 n n 
CGD O2D HEM sing 192 n n 
O2A H2A HEM sing 193 n n 
O2D H2D HEM sing 194 n n 
FE NA HEM sing 195 n n 
FE NB HEM sing 196 n n 
FE NC HEM sing 197 n n 
FE ND HEM sing 198 n n 
#
_atom_sites.entry_id                     1SPE 
_atom_sites.fract_transf_matrix[1][1]    0.015428 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004538 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.032514 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.029624 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 154 2 SO4 SO4 . 
C 3 HEM A 1 155 1 HEM HEM . 
D 4 CMO A 1 201 201 CMO CMO . 
E 5 HOH A 1 202 3 HOH HOH . 
E 5 HOH A 2 203 4 HOH HOH . 
E 5 HOH A 3 204 5 HOH HOH . 
E 5 HOH A 4 205 6 HOH HOH . 
E 5 HOH A 5 206 7 HOH HOH . 
E 5 HOH A 6 207 8 HOH HOH . 
E 5 HOH A 7 208 9 HOH HOH . 
E 5 HOH A 8 209 10 HOH HOH . 
E 5 HOH A 9 210 11 HOH HOH . 
E 5 HOH A 10 211 12 HOH HOH . 
E 5 HOH A 11 212 13 HOH HOH . 
E 5 HOH A 12 213 14 HOH HOH . 
E 5 HOH A 13 214 15 HOH HOH . 
E 5 HOH A 14 215 16 HOH HOH . 
E 5 HOH A 15 216 17 HOH HOH . 
E 5 HOH A 16 217 18 HOH HOH . 
E 5 HOH A 17 218 19 HOH HOH . 
E 5 HOH A 18 219 20 HOH HOH . 
E 5 HOH A 19 220 21 HOH HOH . 
E 5 HOH A 20 221 22 HOH HOH . 
E 5 HOH A 21 222 23 HOH HOH . 
E 5 HOH A 22 223 24 HOH HOH . 
E 5 HOH A 23 224 25 HOH HOH . 
E 5 HOH A 24 225 26 HOH HOH . 
E 5 HOH A 25 226 27 HOH HOH . 
E 5 HOH A 26 227 28 HOH HOH . 
E 5 HOH A 27 228 29 HOH HOH . 
E 5 HOH A 28 229 30 HOH HOH . 
E 5 HOH A 29 230 31 HOH HOH . 
E 5 HOH A 30 231 32 HOH HOH . 
E 5 HOH A 31 232 33 HOH HOH . 
E 5 HOH A 32 233 34 HOH HOH . 
E 5 HOH A 33 234 35 HOH HOH . 
E 5 HOH A 34 235 36 HOH HOH . 
E 5 HOH A 35 236 37 HOH HOH . 
E 5 HOH A 36 237 38 HOH HOH . 
E 5 HOH A 37 238 39 HOH HOH . 
E 5 HOH A 38 239 40 HOH HOH . 
E 5 HOH A 39 240 41 HOH HOH . 
E 5 HOH A 40 241 42 HOH HOH . 
E 5 HOH A 41 242 43 HOH HOH . 
E 5 HOH A 42 243 44 HOH HOH . 
E 5 HOH A 43 244 45 HOH HOH . 
E 5 HOH A 44 245 46 HOH HOH . 
E 5 HOH A 45 246 47 HOH HOH . 
E 5 HOH A 46 247 48 HOH HOH . 
E 5 HOH A 47 248 49 HOH HOH . 
E 5 HOH A 48 249 50 HOH HOH . 
E 5 HOH A 49 250 51 HOH HOH . 
E 5 HOH A 50 251 52 HOH HOH . 
E 5 HOH A 51 252 53 HOH HOH . 
E 5 HOH A 52 253 54 HOH HOH . 
E 5 HOH A 53 254 55 HOH HOH . 
E 5 HOH A 54 255 56 HOH HOH . 
E 5 HOH A 55 256 57 HOH HOH . 
E 5 HOH A 56 257 58 HOH HOH . 
E 5 HOH A 57 258 59 HOH HOH . 
E 5 HOH A 58 259 60 HOH HOH . 
E 5 HOH A 59 260 61 HOH HOH . 
E 5 HOH A 60 261 62 HOH HOH . 
E 5 HOH A 61 262 63 HOH HOH . 
E 5 HOH A 62 263 64 HOH HOH . 
E 5 HOH A 63 264 65 HOH HOH . 
E 5 HOH A 64 265 66 HOH HOH . 
E 5 HOH A 65 266 67 HOH HOH . 
E 5 HOH A 66 267 68 HOH HOH . 
E 5 HOH A 67 268 69 HOH HOH . 
E 5 HOH A 68 269 70 HOH HOH . 
E 5 HOH A 69 270 71 HOH HOH . 
E 5 HOH A 70 271 72 HOH HOH . 
E 5 HOH A 71 272 73 HOH HOH . 
E 5 HOH A 72 273 74 HOH HOH . 
E 5 HOH A 73 274 75 HOH HOH . 
E 5 HOH A 74 275 76 HOH HOH . 
E 5 HOH A 75 276 77 HOH HOH . 
E 5 HOH A 76 277 78 HOH HOH . 
E 5 HOH A 77 278 79 HOH HOH . 
E 5 HOH A 78 279 80 HOH HOH . 
E 5 HOH A 79 280 81 HOH HOH . 
E 5 HOH A 80 281 82 HOH HOH . 
E 5 HOH A 81 282 83 HOH HOH . 
E 5 HOH A 82 283 84 HOH HOH . 
E 5 HOH A 83 284 85 HOH HOH . 
E 5 HOH A 84 285 86 HOH HOH . 
E 5 HOH A 85 286 87 HOH HOH . 
E 5 HOH A 86 287 88 HOH HOH . 
E 5 HOH A 87 288 89 HOH HOH . 
E 5 HOH A 88 289 90 HOH HOH . 
E 5 HOH A 89 290 91 HOH HOH . 
E 5 HOH A 90 291 92 HOH HOH . 
E 5 HOH A 91 292 93 HOH HOH . 
E 5 HOH A 92 293 94 HOH HOH . 
E 5 HOH A 93 294 95 HOH HOH . 
E 5 HOH A 94 295 96 HOH HOH . 
E 5 HOH A 95 296 97 HOH HOH . 
E 5 HOH A 96 297 98 HOH HOH . 
E 5 HOH A 97 298 99 HOH HOH . 
E 5 HOH A 98 299 100 HOH HOH . 
E 5 HOH A 99 300 101 HOH HOH . 
E 5 HOH A 100 301 102 HOH HOH . 
E 5 HOH A 101 302 103 HOH HOH . 
E 5 HOH A 102 303 104 HOH HOH . 
E 5 HOH A 103 304 105 HOH HOH . 
E 5 HOH A 104 305 106 HOH HOH . 
E 5 HOH A 105 306 107 HOH HOH . 
E 5 HOH A 106 307 108 HOH HOH . 
E 5 HOH A 107 308 109 HOH HOH . 
E 5 HOH A 108 309 110 HOH HOH . 
E 5 HOH A 109 310 111 HOH HOH . 
E 5 HOH A 110 311 112 HOH HOH . 
E 5 HOH A 111 312 113 HOH HOH . 
E 5 HOH A 112 313 114 HOH HOH . 
E 5 HOH A 113 314 115 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . C 3 15.952 31.222 5.15 1 17.3 ? CHA HEM 155 A 1 
HETATM 2 C CHB HEM . . . C 3 13.941 28.009 8.116 1 18.4 ? CHB HEM 155 A 1 
HETATM 3 C CHC HEM . . . C 3 13.5 25.064 4.504 1 15.1 ? CHC HEM 155 A 1 
HETATM 4 C CHD HEM . . . C 3 15.666 28.198 1.452 1 20.6 ? CHD HEM 155 A 1 
HETATM 5 C C1A HEM . . . C 3 15.448 30.597 6.236 1 19.7 ? C1A HEM 155 A 1 
HETATM 6 C C2A HEM . . . C 3 15.489 31.204 7.49 1 22.6 ? C2A HEM 155 A 1 
HETATM 7 C C3A HEM . . . C 3 14.953 30.286 8.328 1 21.1 ? C3A HEM 155 A 1 
HETATM 8 C C4A HEM . . . C 3 14.585 29.151 7.558 1 20.3 ? C4A HEM 155 A 1 
HETATM 9 C CMA HEM . . . C 3 14.635 30.554 9.82 1 19.8 ? CMA HEM 155 A 1 
HETATM 10 C CAA HEM . . . C 3 15.832 32.714 7.887 1 29.5 ? CAA HEM 155 A 1 
HETATM 11 C CBA HEM . . . C 3 14.592 33.643 8.11 1 30.8 ? CBA HEM 155 A 1 
HETATM 12 C CGA HEM . . . C 3 13.526 33.463 7.028 1 38.1 ? CGA HEM 155 A 1 
HETATM 13 O O1A HEM . . . C 3 13.762 33.863 5.867 1 42.1 ? O1A HEM 155 A 1 
HETATM 14 O O2A HEM . . . C 3 12.498 32.805 7.294 1 42.7 ? O2A HEM 155 A 1 
HETATM 15 C C1B HEM . . . C 3 13.72 26.858 7.365 1 20.3 ? C1B HEM 155 A 1 
HETATM 16 C C2B HEM . . . C 3 13.181 25.684 7.879 1 17.6 ? C2B HEM 155 A 1 
HETATM 17 C C3B HEM . . . C 3 12.95 24.915 6.849 1 19.4 ? C3B HEM 155 A 1 
HETATM 18 C C4B HEM . . . C 3 13.432 25.589 5.709 1 15 ? C4B HEM 155 A 1 
HETATM 19 C CMB HEM . . . C 3 12.855 25.427 9.341 1 20.1 ? CMB HEM 155 A 1 
HETATM 20 C CAB HEM . . . C 3 12.318 23.631 6.868 1 22.6 ? CAB HEM 155 A 1 
HETATM 21 C CBB HEM . . . C 3 12.638 22.568 7.816 1 20 ? CBB HEM 155 A 1 
HETATM 22 C C1C HEM . . . C 3 14.227 25.643 3.424 1 16.7 ? C1C HEM 155 A 1 
HETATM 23 C C2C HEM . . . C 3 14.278 25.025 2.081 1 17.8 ? C2C HEM 155 A 1 
HETATM 24 C C3C HEM . . . C 3 14.813 25.981 1.233 1 17.9 ? C3C HEM 155 A 1 
HETATM 25 C C4C HEM . . . C 3 15.009 27.093 2.006 1 18 ? C4C HEM 155 A 1 
HETATM 26 C CMC HEM . . . C 3 13.873 23.581 1.752 1 14.4 ? CMC HEM 155 A 1 
HETATM 27 C CAC HEM . . . C 3 15.392 25.794 -0.014 1 19.9 ? CAC HEM 155 A 1 
HETATM 28 C CBC HEM . . . C 3 15.238 24.606 -0.89 1 20.3 ? CBC HEM 155 A 1 
HETATM 29 C C1D HEM . . . C 3 16.063 29.255 2.232 1 19.8 ? C1D HEM 155 A 1 
HETATM 30 C C2D HEM . . . C 3 16.777 30.42 1.73 1 19 ? C2D HEM 155 A 1 
HETATM 31 C C3D HEM . . . C 3 16.858 31.235 2.803 1 21.8 ? C3D HEM 155 A 1 
HETATM 32 C C4D HEM . . . C 3 16.169 30.614 3.915 1 20.4 ? C4D HEM 155 A 1 
HETATM 33 C CMD HEM . . . C 3 16.922 30.723 0.26 1 18 ? CMD HEM 155 A 1 
HETATM 34 C CAD HEM . . . C 3 17.372 32.676 2.955 1 29.1 ? CAD HEM 155 A 1 
HETATM 35 C CBD HEM . . . C 3 18.733 32.759 3.645 1 35.2 ? CBD HEM 155 A 1 
HETATM 36 C CGD HEM . . . C 3 19.772 32.019 2.873 1 40.7 ? CGD HEM 155 A 1 
HETATM 37 O O1D HEM . . . C 3 20.103 30.878 3.272 1 46.5 ? O1D HEM 155 A 1 
HETATM 38 O O2D HEM . . . C 3 20.149 32.507 1.783 1 43.1 ? O2D HEM 155 A 1 
HETATM 39 N NA HEM . . . C 3 14.948 29.326 6.292 1 17.1 ? NA HEM 155 A 1 
HETATM 40 N NB HEM . . . C 3 13.941 26.763 6.018 1 18.1 ? NB HEM 155 A 1 
HETATM 41 N NC HEM . . . C 3 14.683 26.916 3.358 1 15.2 ? NC HEM 155 A 1 
HETATM 42 N ND HEM . . . C 3 15.677 29.386 3.543 1 20.5 ? ND HEM 155 A 1 
HETATM 43 FE FE HEM . . . C 3 14.814 28.126 4.852 1 22.9 ? FE HEM 155 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           258 
_model_server_stats.encode_time_ms          16 
_model_server_stats.element_count           43 
#