data_1SQ4 # _model_server_result.job_id 3k1c0t8q7q7ASrhDs5-l6A _model_server_result.datetime_utc '2024-10-19 05:26:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1sq4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":303}' # _entry.id 1SQ4 # _exptl.entry_id 1SQ4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.082 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'THIOCYANATE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1SQ4 _cell.length_a 106.86 _cell.length_b 106.86 _cell.length_c 107.446 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SQ4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 4 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA octameric 8 author_and_software_defined_assembly 1 PQS tetrameric 4 software_defined_assembly 2 PQS tetrameric 4 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1,2,3,4 A,C,D,G 2 1,2,3,4 B,E,F,H 3 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_675 -x+1,-y+2,z -1 0 0 0 -1 0 0 0 1 106.86 213.72 0 3 'crystal symmetry operation' 3_655 -y+3/2,x+1/2,z 0 -1 0 1 0 0 0 0 1 160.29 53.43 0 4 'crystal symmetry operation' 4_465 y-1/2,-x+3/2,z 0 1 0 -1 0 0 0 0 1 -53.43 160.29 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 24 A ALA 24 1_555 A N MSE 25 A MSE 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale2 A C MSE 25 A MSE 25 1_555 A N PHE 26 A PHE 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale3 A C VAL 37 A VAL 37 1_555 A N MSE 38 A MSE 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C MSE 38 A MSE 38 1_555 A N ARG 39 A ARG 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale5 A C ASN 51 A ASN 51 1_555 A N MSE 52 A MSE 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale6 A C MSE 52 A MSE 52 1_555 A N ARG 53 A ARG 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale7 A C ARG 53 A ARG 53 1_555 A N MSE 54 A MSE 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 A C MSE 54 A MSE 54 1_555 A N TRP 55 A TRP 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale9 A C ALA 111 A ALA 111 1_555 A N MSE 112 A MSE 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale10 A C MSE 112 A MSE 112 1_555 A N GLN 113 A GLN 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale11 A C VAL 168 A VAL 168 1_555 A N MSE 169 A MSE 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale12 A C MSE 169 A MSE 169 1_555 A N PRO 170 A PRO 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale13 A C ASP 183 A ASP 183 1_555 A N MSE 184 A MSE 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale14 A C MSE 184 A MSE 184 1_555 A N SER 185 A SER 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale15 A C ASP 186 A ASP 186 1_555 A N MSE 187 A MSE 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale16 A C MSE 187 A MSE 187 1_555 A N ARG 188 A ARG 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale17 A C ASP 190 A ASP 190 1_555 A N MSE 191 A MSE 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale18 A C MSE 191 A MSE 191 1_555 A N HIS 192 A HIS 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale19 A C VAL 211 A VAL 211 1_555 A N MSE 212 A MSE 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale20 A C MSE 212 A MSE 212 1_555 A N GLU 213 A GLU 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale21 A C PHE 239 A PHE 239 1_555 A N MSE 240 A MSE 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale22 A C MSE 240 A MSE 240 1_555 A N TRP 241 A TRP 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale23 A C HIS 269 A HIS 269 1_555 A N MSE 270 A MSE 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale24 A C MSE 270 A MSE 270 1_555 A N ARG 271 A ARG 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale25 B C ALA 24 B ALA 24 1_555 B N MSE 25 B MSE 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale26 B C MSE 25 B MSE 25 1_555 B N PHE 26 B PHE 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale27 B C VAL 37 B VAL 37 1_555 B N MSE 38 B MSE 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale28 B C MSE 38 B MSE 38 1_555 B N ARG 39 B ARG 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale29 B C ASN 51 B ASN 51 1_555 B N MSE 52 B MSE 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale30 B C MSE 52 B MSE 52 1_555 B N ARG 53 B ARG 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale31 B C ARG 53 B ARG 53 1_555 B N MSE 54 B MSE 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale32 B C MSE 54 B MSE 54 1_555 B N TRP 55 B TRP 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale33 B C ALA 111 B ALA 111 1_555 B N MSE 112 B MSE 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale34 B C MSE 112 B MSE 112 1_555 B N GLN 113 B GLN 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale35 B C VAL 168 B VAL 168 1_555 B N MSE 169 B MSE 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale36 B C MSE 169 B MSE 169 1_555 B N PRO 170 B PRO 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale37 B C ASP 183 B ASP 183 1_555 B N MSE 184 B MSE 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale38 B C MSE 184 B MSE 184 1_555 B N SER 185 B SER 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale39 B C ASP 186 B ASP 186 1_555 B N MSE 187 B MSE 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale40 B C MSE 187 B MSE 187 1_555 B N ARG 188 B ARG 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale41 B C ASP 190 B ASP 190 1_555 B N MSE 191 B MSE 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale42 B C MSE 191 B MSE 191 1_555 B N HIS 192 B HIS 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale43 B C VAL 211 B VAL 211 1_555 B N MSE 212 B MSE 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale44 B C MSE 212 B MSE 212 1_555 B N GLU 213 B GLU 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale45 B C PHE 239 B PHE 239 1_555 B N MSE 240 B MSE 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale46 B C MSE 240 B MSE 240 1_555 B N TRP 241 B TRP 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale47 B C HIS 269 B HIS 269 1_555 B N MSE 270 B MSE 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale48 B C MSE 270 B MSE 270 1_555 B N ARG 271 B ARG 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C N S -1' _chem_comp.formula_weight 58.082 _chem_comp.id SCN _chem_comp.mon_nstd_flag . _chem_comp.name 'THIOCYANATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S C SCN sing 296 n n C N SCN trip 297 n n # _atom_sites.entry_id 1SQ4 _atom_sites.fract_transf_matrix[1][1] 0.009358 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009358 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009307 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SCN A 1 301 301 SCN SCN . D 2 SCN A 1 302 302 SCN SCN . E 2 SCN B 1 303 303 SCN SCN . F 2 SCN B 1 304 304 SCN SCN . G 3 HOH A 1 303 2 HOH HOH . G 3 HOH A 2 304 3 HOH HOH . G 3 HOH A 3 305 4 HOH HOH . G 3 HOH A 4 306 6 HOH HOH . G 3 HOH A 5 307 7 HOH HOH . G 3 HOH A 6 308 8 HOH HOH . G 3 HOH A 7 309 9 HOH HOH . G 3 HOH A 8 310 11 HOH HOH . G 3 HOH A 9 311 14 HOH HOH . G 3 HOH A 10 312 15 HOH HOH . G 3 HOH A 11 313 17 HOH HOH . G 3 HOH A 12 314 19 HOH HOH . G 3 HOH A 13 315 20 HOH HOH . G 3 HOH A 14 316 23 HOH HOH . G 3 HOH A 15 317 25 HOH HOH . G 3 HOH A 16 318 27 HOH HOH . G 3 HOH A 17 319 29 HOH HOH . G 3 HOH A 18 320 30 HOH HOH . G 3 HOH A 19 321 31 HOH HOH . G 3 HOH A 20 322 32 HOH HOH . G 3 HOH A 21 323 34 HOH HOH . G 3 HOH A 22 324 37 HOH HOH . G 3 HOH A 23 325 41 HOH HOH . G 3 HOH A 24 326 42 HOH HOH . G 3 HOH A 25 327 43 HOH HOH . G 3 HOH A 26 328 44 HOH HOH . G 3 HOH A 27 329 49 HOH HOH . G 3 HOH A 28 330 50 HOH HOH . G 3 HOH A 29 331 56 HOH HOH . G 3 HOH A 30 332 57 HOH HOH . G 3 HOH A 31 333 59 HOH HOH . G 3 HOH A 32 334 62 HOH HOH . G 3 HOH A 33 335 63 HOH HOH . G 3 HOH A 34 336 65 HOH HOH . G 3 HOH A 35 337 66 HOH HOH . G 3 HOH A 36 338 67 HOH HOH . G 3 HOH A 37 339 68 HOH HOH . G 3 HOH A 38 340 69 HOH HOH . G 3 HOH A 39 341 70 HOH HOH . G 3 HOH A 40 342 75 HOH HOH . G 3 HOH A 41 343 78 HOH HOH . G 3 HOH A 42 344 79 HOH HOH . G 3 HOH A 43 345 81 HOH HOH . G 3 HOH A 44 346 82 HOH HOH . G 3 HOH A 45 347 83 HOH HOH . G 3 HOH A 46 348 85 HOH HOH . G 3 HOH A 47 349 86 HOH HOH . G 3 HOH A 48 350 87 HOH HOH . G 3 HOH A 49 351 88 HOH HOH . G 3 HOH A 50 352 89 HOH HOH . G 3 HOH A 51 353 90 HOH HOH . G 3 HOH A 52 354 91 HOH HOH . H 3 HOH B 1 305 12 HOH HOH . H 3 HOH B 2 306 13 HOH HOH . H 3 HOH B 3 307 16 HOH HOH . H 3 HOH B 4 308 18 HOH HOH . H 3 HOH B 5 309 21 HOH HOH . H 3 HOH B 6 310 22 HOH HOH . H 3 HOH B 7 311 24 HOH HOH . H 3 HOH B 8 312 26 HOH HOH . H 3 HOH B 9 313 28 HOH HOH . H 3 HOH B 10 314 33 HOH HOH . H 3 HOH B 11 315 35 HOH HOH . H 3 HOH B 12 316 36 HOH HOH . H 3 HOH B 13 317 38 HOH HOH . H 3 HOH B 14 318 39 HOH HOH . H 3 HOH B 15 319 40 HOH HOH . H 3 HOH B 16 320 45 HOH HOH . H 3 HOH B 17 321 46 HOH HOH . H 3 HOH B 18 322 47 HOH HOH . H 3 HOH B 19 323 48 HOH HOH . H 3 HOH B 20 324 51 HOH HOH . H 3 HOH B 21 325 52 HOH HOH . H 3 HOH B 22 326 53 HOH HOH . H 3 HOH B 23 327 54 HOH HOH . H 3 HOH B 24 328 55 HOH HOH . H 3 HOH B 25 329 58 HOH HOH . H 3 HOH B 26 330 60 HOH HOH . H 3 HOH B 27 331 61 HOH HOH . H 3 HOH B 28 332 64 HOH HOH . H 3 HOH B 29 333 71 HOH HOH . H 3 HOH B 30 334 72 HOH HOH . H 3 HOH B 31 335 73 HOH HOH . H 3 HOH B 32 336 74 HOH HOH . H 3 HOH B 33 337 76 HOH HOH . H 3 HOH B 34 338 77 HOH HOH . H 3 HOH B 35 339 80 HOH HOH . H 3 HOH B 36 340 92 HOH HOH . H 3 HOH B 37 341 93 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SCN . . . E 2 28.721 97.135 -11.483 1 27.49 ? S SCN 303 B 1 HETATM 2 C C SCN . . . E 2 28.536 95.451 -11.433 1 27.14 ? C SCN 303 B 1 HETATM 3 N N SCN . . . E 2 28.436 94.319 -11.38 1 27.53 ? N SCN 303 B 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 3 #