data_1SQA
#
_model_server_result.job_id            ywiXiM-1IM8Jjn92P0QFOA 
_model_server_result.datetime_utc      '2024-10-15 15:19:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1sqa 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1001}' 
#
_entry.id    1SQA 
#
_exptl.entry_id    1SQA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              411.459 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            6-[(Z)-AMINO(IMINO)METHYL]-N-[4-(AMINOMETHYL)PHENYL]-4-(PYRIMIDIN-2-YLAMINO)-2-NAPHTHAMIDE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1SQA 
_cell.length_a            55.16 
_cell.length_b            53 
_cell.length_c            82.3 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1SQA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 31 A CYS 34 1_555 A SG CYS 47 A CYS 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
disulf ? disulf2 A SG CYS 39 A CYS 46 1_555 A SG CYS 110 A CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? 
disulf ? disulf3 A SG CYS 135 A CYS 147 1_555 A SG CYS 204 A CYS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? 
disulf ? disulf4 A SG CYS 167 A CYS 180 1_555 A SG CYS 183 A CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? 
disulf ? disulf5 A SG CYS 194 A CYS 207 1_555 A SG CYS 222 A CYS 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
#
_chem_comp.formula           'C23 H21 N7 O' 
_chem_comp.formula_weight    411.459 
_chem_comp.id                UI1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              6-[(Z)-AMINO(IMINO)METHYL]-N-[4-(AMINOMETHYL)PHENYL]-4-(PYRIMIDIN-2-YLAMINO)-2-NAPHTHAMIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 UI1 sing 362 n n 
N1 HN11 UI1 sing 363 n n 
N1 HN12 UI1 sing 364 n n 
C2 C3 UI1 sing 365 n n 
C2 H21A UI1 sing 366 n n 
C2 H22 UI1 sing 367 n n 
C3 C4 UI1 sing 368 n y 
C3 C31 UI1 doub 369 n y 
C4 C5 UI1 doub 370 n y 
C4 H4 UI1 sing 371 n n 
C5 C6 UI1 sing 372 n y 
C5 H5 UI1 sing 373 n n 
C6 N7 UI1 sing 374 n n 
C6 C30 UI1 doub 375 n y 
N7 C8 UI1 sing 376 n n 
N7 HN7 UI1 sing 377 n n 
C8 O9 UI1 doub 378 n n 
C8 C10 UI1 sing 379 n n 
C10 C11 UI1 sing 380 n y 
C10 C26 UI1 doub 381 n y 
C11 C12 UI1 doub 382 n y 
C11 H11 UI1 sing 383 n n 
C12 N13 UI1 sing 384 n n 
C12 C20 UI1 sing 385 n y 
N13 C14 UI1 sing 386 n n 
N13 H13 UI1 sing 387 n n 
C14 N15 UI1 sing 388 n y 
C14 N19 UI1 doub 389 n y 
N15 C16 UI1 doub 390 n y 
C16 C17 UI1 sing 391 n y 
C16 H16 UI1 sing 392 n n 
C17 C18 UI1 doub 393 n y 
C17 H17 UI1 sing 394 n n 
C18 N19 UI1 sing 395 n y 
C18 H18 UI1 sing 396 n n 
C20 C21 UI1 sing 397 n y 
C20 C25 UI1 doub 398 n y 
C21 C22 UI1 doub 399 n y 
C21 H21 UI1 sing 400 n n 
C22 C23 UI1 sing 401 n y 
C22 C27 UI1 sing 402 n n 
C23 C24 UI1 doub 403 n y 
C23 H23 UI1 sing 404 n n 
C24 C25 UI1 sing 405 n y 
C24 H24 UI1 sing 406 n n 
C25 C26 UI1 sing 407 n y 
C26 H26 UI1 sing 408 n n 
C27 N28 UI1 doub 409 n n 
C27 N29 UI1 sing 410 n n 
N28 H28 UI1 sing 411 n n 
N29 H291 UI1 sing 412 n n 
N29 H292 UI1 sing 413 n n 
C30 C31 UI1 sing 414 n y 
C30 H30 UI1 sing 415 n n 
C31 H31 UI1 sing 416 n n 
#
_atom_sites.entry_id                     1SQA 
_atom_sites.fract_transf_matrix[1][1]    0.018129 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018868 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012151 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 301 301 SO4 SO4 . 
C 2 SO4 A 1 302 302 SO4 SO4 . 
D 2 SO4 A 1 303 303 SO4 SO4 . 
E 3 UI1 A 1 1001 1001 UI1 LIG . 
F 4 HOH A 1 1002 1 HOH HOH . 
F 4 HOH A 2 1003 2 HOH HOH . 
F 4 HOH A 3 1004 3 HOH HOH . 
F 4 HOH A 4 1005 4 HOH HOH . 
F 4 HOH A 5 1006 5 HOH HOH . 
F 4 HOH A 6 1007 6 HOH HOH . 
F 4 HOH A 7 1008 7 HOH HOH . 
F 4 HOH A 8 1009 8 HOH HOH . 
F 4 HOH A 9 1010 9 HOH HOH . 
F 4 HOH A 10 1011 10 HOH HOH . 
F 4 HOH A 11 1012 11 HOH HOH . 
F 4 HOH A 12 1013 12 HOH HOH . 
F 4 HOH A 13 1014 13 HOH HOH . 
F 4 HOH A 14 1015 14 HOH HOH . 
F 4 HOH A 15 1016 15 HOH HOH . 
F 4 HOH A 16 1017 16 HOH HOH . 
F 4 HOH A 17 1018 17 HOH HOH . 
F 4 HOH A 18 1019 18 HOH HOH . 
F 4 HOH A 19 1020 19 HOH HOH . 
F 4 HOH A 20 1021 20 HOH HOH . 
F 4 HOH A 21 1022 21 HOH HOH . 
F 4 HOH A 22 1023 22 HOH HOH . 
F 4 HOH A 23 1024 23 HOH HOH . 
F 4 HOH A 24 1025 24 HOH HOH . 
F 4 HOH A 25 1026 25 HOH HOH . 
F 4 HOH A 26 1027 26 HOH HOH . 
F 4 HOH A 27 1028 27 HOH HOH . 
F 4 HOH A 28 1029 28 HOH HOH . 
F 4 HOH A 29 1030 29 HOH HOH . 
F 4 HOH A 30 1031 30 HOH HOH . 
F 4 HOH A 31 1032 31 HOH HOH . 
F 4 HOH A 32 1033 32 HOH HOH . 
F 4 HOH A 33 1034 33 HOH HOH . 
F 4 HOH A 34 1035 34 HOH HOH . 
F 4 HOH A 35 1036 35 HOH HOH . 
F 4 HOH A 36 1037 36 HOH HOH . 
F 4 HOH A 37 1038 37 HOH HOH . 
F 4 HOH A 38 1039 38 HOH HOH . 
F 4 HOH A 39 1040 39 HOH HOH . 
F 4 HOH A 40 1041 40 HOH HOH . 
F 4 HOH A 41 1042 41 HOH HOH . 
F 4 HOH A 42 1043 42 HOH HOH . 
F 4 HOH A 43 1044 43 HOH HOH . 
F 4 HOH A 44 1045 44 HOH HOH . 
F 4 HOH A 45 1046 45 HOH HOH . 
F 4 HOH A 46 1047 46 HOH HOH . 
F 4 HOH A 47 1048 47 HOH HOH . 
F 4 HOH A 48 1049 48 HOH HOH . 
F 4 HOH A 49 1050 49 HOH HOH . 
F 4 HOH A 50 1051 50 HOH HOH . 
F 4 HOH A 51 1052 51 HOH HOH . 
F 4 HOH A 52 1053 52 HOH HOH . 
F 4 HOH A 53 1054 53 HOH HOH . 
F 4 HOH A 54 1055 54 HOH HOH . 
F 4 HOH A 55 1056 55 HOH HOH . 
F 4 HOH A 56 1057 56 HOH HOH . 
F 4 HOH A 57 1058 57 HOH HOH . 
F 4 HOH A 58 1059 58 HOH HOH . 
F 4 HOH A 59 1060 59 HOH HOH . 
F 4 HOH A 60 1061 60 HOH HOH . 
F 4 HOH A 61 1062 61 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 UI1 . . . E 3 29.552 11.853 28.717 1 18.87 ? N1 UI1 1001 A 1 
HETATM 2 C C2 UI1 . . . E 3 28.33 11.073 28.859 1 9.59 ? C2 UI1 1001 A 1 
HETATM 3 C C3 UI1 . . . E 3 27.263 11.844 29.651 1 10.77 ? C3 UI1 1001 A 1 
HETATM 4 C C4 UI1 . . . E 3 26.579 12.906 29.038 1 9.2 ? C4 UI1 1001 A 1 
HETATM 5 C C5 UI1 . . . E 3 25.602 13.606 29.761 1 12.59 ? C5 UI1 1001 A 1 
HETATM 6 C C6 UI1 . . . E 3 25.285 13.259 31.111 1 10.81 ? C6 UI1 1001 A 1 
HETATM 7 N N7 UI1 . . . E 3 24.244 14.073 31.686 1 15.41 ? N7 UI1 1001 A 1 
HETATM 8 C C8 UI1 . . . E 3 24.516 14.993 32.592 1 10.89 ? C8 UI1 1001 A 1 
HETATM 9 O O9 UI1 . . . E 3 25.653 15.15 33.021 1 19.63 ? O9 UI1 1001 A 1 
HETATM 10 C C10 UI1 . . . E 3 23.418 15.911 33.026 1 12.18 ? C10 UI1 1001 A 1 
HETATM 11 C C11 UI1 . . . E 3 23.763 16.969 33.898 1 9.62 ? C11 UI1 1001 A 1 
HETATM 12 C C12 UI1 . . . E 3 22.818 17.896 34.274 1 8.27 ? C12 UI1 1001 A 1 
HETATM 13 N N13 UI1 . . . E 3 23.218 18.997 35.111 1 6.92 ? N13 UI1 1001 A 1 
HETATM 14 C C14 UI1 . . . E 3 23.72 18.839 36.429 1 7.12 ? C14 UI1 1001 A 1 
HETATM 15 N N15 UI1 . . . E 3 24.154 19.942 37.085 1 9.02 ? N15 UI1 1001 A 1 
HETATM 16 C C16 UI1 . . . E 3 24.625 19.855 38.349 1 4.99 ? C16 UI1 1001 A 1 
HETATM 17 C C17 UI1 . . . E 3 24.658 18.602 38.998 1 4 ? C17 UI1 1001 A 1 
HETATM 18 C C18 UI1 . . . E 3 24.206 17.48 38.288 1 5.43 ? C18 UI1 1001 A 1 
HETATM 19 N N19 UI1 . . . E 3 23.747 17.625 37.022 1 9.13 ? N19 UI1 1001 A 1 
HETATM 20 C C20 UI1 . . . E 3 21.473 17.783 33.783 1 9.71 ? C20 UI1 1001 A 1 
HETATM 21 C C21 UI1 . . . E 3 20.515 18.755 34.16 1 9.28 ? C21 UI1 1001 A 1 
HETATM 22 C C22 UI1 . . . E 3 19.186 18.662 33.693 1 4.6 ? C22 UI1 1001 A 1 
HETATM 23 C C23 UI1 . . . E 3 18.801 17.598 32.854 1 2 ? C23 UI1 1001 A 1 
HETATM 24 C C24 UI1 . . . E 3 19.756 16.625 32.469 1 5.6 ? C24 UI1 1001 A 1 
HETATM 25 C C25 UI1 . . . E 3 21.101 16.722 32.931 1 6.43 ? C25 UI1 1001 A 1 
HETATM 26 C C26 UI1 . . . E 3 22.077 15.777 32.541 1 9.03 ? C26 UI1 1001 A 1 
HETATM 27 C C27 UI1 . . . E 3 18.238 19.715 34.126 1 2 ? C27 UI1 1001 A 1 
HETATM 28 N N28 UI1 . . . E 3 18.656 20.693 34.879 1 2 ? N28 UI1 1001 A 1 
HETATM 29 N N29 UI1 . . . E 3 16.965 19.677 33.756 1 2 ? N29 UI1 1001 A 1 
HETATM 30 C C30 UI1 . . . E 3 25.958 12.198 31.728 1 10.89 ? C30 UI1 1001 A 1 
HETATM 31 C C31 UI1 . . . E 3 26.959 11.488 30.991 1 13.91 ? C31 UI1 1001 A 1 
#
_model_server_stats.io_time_ms              45 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           31 
#