data_1SQA # _model_server_result.job_id LRba3R_EzA_9WMXl0P6M2A _model_server_result.datetime_utc '2024-11-28 09:12:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1sqa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1001}' # _entry.id 1SQA # _exptl.entry_id 1SQA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 411.459 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-[(Z)-AMINO(IMINO)METHYL]-N-[4-(AMINOMETHYL)PHENYL]-4-(PYRIMIDIN-2-YLAMINO)-2-NAPHTHAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1SQA _cell.length_a 55.16 _cell.length_b 53 _cell.length_c 82.3 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SQA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 31 A CYS 34 1_555 A SG CYS 47 A CYS 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? disulf ? disulf2 A SG CYS 39 A CYS 46 1_555 A SG CYS 110 A CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? disulf ? disulf3 A SG CYS 135 A CYS 147 1_555 A SG CYS 204 A CYS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? disulf ? disulf4 A SG CYS 167 A CYS 180 1_555 A SG CYS 183 A CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? disulf ? disulf5 A SG CYS 194 A CYS 207 1_555 A SG CYS 222 A CYS 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? # _chem_comp.formula 'C23 H21 N7 O' _chem_comp.formula_weight 411.459 _chem_comp.id UI1 _chem_comp.mon_nstd_flag . _chem_comp.name 6-[(Z)-AMINO(IMINO)METHYL]-N-[4-(AMINOMETHYL)PHENYL]-4-(PYRIMIDIN-2-YLAMINO)-2-NAPHTHAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 UI1 sing 362 n n N1 HN11 UI1 sing 363 n n N1 HN12 UI1 sing 364 n n C2 C3 UI1 sing 365 n n C2 H21A UI1 sing 366 n n C2 H22 UI1 sing 367 n n C3 C4 UI1 sing 368 n y C3 C31 UI1 doub 369 n y C4 C5 UI1 doub 370 n y C4 H4 UI1 sing 371 n n C5 C6 UI1 sing 372 n y C5 H5 UI1 sing 373 n n C6 N7 UI1 sing 374 n n C6 C30 UI1 doub 375 n y N7 C8 UI1 sing 376 n n N7 HN7 UI1 sing 377 n n C8 O9 UI1 doub 378 n n C8 C10 UI1 sing 379 n n C10 C11 UI1 sing 380 n y C10 C26 UI1 doub 381 n y C11 C12 UI1 doub 382 n y C11 H11 UI1 sing 383 n n C12 N13 UI1 sing 384 n n C12 C20 UI1 sing 385 n y N13 C14 UI1 sing 386 n n N13 H13 UI1 sing 387 n n C14 N15 UI1 sing 388 n y C14 N19 UI1 doub 389 n y N15 C16 UI1 doub 390 n y C16 C17 UI1 sing 391 n y C16 H16 UI1 sing 392 n n C17 C18 UI1 doub 393 n y C17 H17 UI1 sing 394 n n C18 N19 UI1 sing 395 n y C18 H18 UI1 sing 396 n n C20 C21 UI1 sing 397 n y C20 C25 UI1 doub 398 n y C21 C22 UI1 doub 399 n y C21 H21 UI1 sing 400 n n C22 C23 UI1 sing 401 n y C22 C27 UI1 sing 402 n n C23 C24 UI1 doub 403 n y C23 H23 UI1 sing 404 n n C24 C25 UI1 sing 405 n y C24 H24 UI1 sing 406 n n C25 C26 UI1 sing 407 n y C26 H26 UI1 sing 408 n n C27 N28 UI1 doub 409 n n C27 N29 UI1 sing 410 n n N28 H28 UI1 sing 411 n n N29 H291 UI1 sing 412 n n N29 H292 UI1 sing 413 n n C30 C31 UI1 sing 414 n y C30 H30 UI1 sing 415 n n C31 H31 UI1 sing 416 n n # _atom_sites.entry_id 1SQA _atom_sites.fract_transf_matrix[1][1] 0.018129 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018868 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012151 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 301 301 SO4 SO4 . C 2 SO4 A 1 302 302 SO4 SO4 . D 2 SO4 A 1 303 303 SO4 SO4 . E 3 UI1 A 1 1001 1001 UI1 LIG . F 4 HOH A 1 1002 1 HOH HOH . F 4 HOH A 2 1003 2 HOH HOH . F 4 HOH A 3 1004 3 HOH HOH . F 4 HOH A 4 1005 4 HOH HOH . F 4 HOH A 5 1006 5 HOH HOH . F 4 HOH A 6 1007 6 HOH HOH . F 4 HOH A 7 1008 7 HOH HOH . F 4 HOH A 8 1009 8 HOH HOH . F 4 HOH A 9 1010 9 HOH HOH . F 4 HOH A 10 1011 10 HOH HOH . F 4 HOH A 11 1012 11 HOH HOH . F 4 HOH A 12 1013 12 HOH HOH . F 4 HOH A 13 1014 13 HOH HOH . F 4 HOH A 14 1015 14 HOH HOH . F 4 HOH A 15 1016 15 HOH HOH . F 4 HOH A 16 1017 16 HOH HOH . F 4 HOH A 17 1018 17 HOH HOH . F 4 HOH A 18 1019 18 HOH HOH . F 4 HOH A 19 1020 19 HOH HOH . F 4 HOH A 20 1021 20 HOH HOH . F 4 HOH A 21 1022 21 HOH HOH . F 4 HOH A 22 1023 22 HOH HOH . F 4 HOH A 23 1024 23 HOH HOH . F 4 HOH A 24 1025 24 HOH HOH . F 4 HOH A 25 1026 25 HOH HOH . F 4 HOH A 26 1027 26 HOH HOH . F 4 HOH A 27 1028 27 HOH HOH . F 4 HOH A 28 1029 28 HOH HOH . F 4 HOH A 29 1030 29 HOH HOH . F 4 HOH A 30 1031 30 HOH HOH . F 4 HOH A 31 1032 31 HOH HOH . F 4 HOH A 32 1033 32 HOH HOH . F 4 HOH A 33 1034 33 HOH HOH . F 4 HOH A 34 1035 34 HOH HOH . F 4 HOH A 35 1036 35 HOH HOH . F 4 HOH A 36 1037 36 HOH HOH . F 4 HOH A 37 1038 37 HOH HOH . F 4 HOH A 38 1039 38 HOH HOH . F 4 HOH A 39 1040 39 HOH HOH . F 4 HOH A 40 1041 40 HOH HOH . F 4 HOH A 41 1042 41 HOH HOH . F 4 HOH A 42 1043 42 HOH HOH . F 4 HOH A 43 1044 43 HOH HOH . F 4 HOH A 44 1045 44 HOH HOH . F 4 HOH A 45 1046 45 HOH HOH . F 4 HOH A 46 1047 46 HOH HOH . F 4 HOH A 47 1048 47 HOH HOH . F 4 HOH A 48 1049 48 HOH HOH . F 4 HOH A 49 1050 49 HOH HOH . F 4 HOH A 50 1051 50 HOH HOH . F 4 HOH A 51 1052 51 HOH HOH . F 4 HOH A 52 1053 52 HOH HOH . F 4 HOH A 53 1054 53 HOH HOH . F 4 HOH A 54 1055 54 HOH HOH . F 4 HOH A 55 1056 55 HOH HOH . F 4 HOH A 56 1057 56 HOH HOH . F 4 HOH A 57 1058 57 HOH HOH . F 4 HOH A 58 1059 58 HOH HOH . F 4 HOH A 59 1060 59 HOH HOH . F 4 HOH A 60 1061 60 HOH HOH . F 4 HOH A 61 1062 61 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 UI1 . . . E 3 29.552 11.853 28.717 1 18.87 ? N1 UI1 1001 A 1 HETATM 2 C C2 UI1 . . . E 3 28.33 11.073 28.859 1 9.59 ? C2 UI1 1001 A 1 HETATM 3 C C3 UI1 . . . E 3 27.263 11.844 29.651 1 10.77 ? C3 UI1 1001 A 1 HETATM 4 C C4 UI1 . . . E 3 26.579 12.906 29.038 1 9.2 ? C4 UI1 1001 A 1 HETATM 5 C C5 UI1 . . . E 3 25.602 13.606 29.761 1 12.59 ? C5 UI1 1001 A 1 HETATM 6 C C6 UI1 . . . E 3 25.285 13.259 31.111 1 10.81 ? C6 UI1 1001 A 1 HETATM 7 N N7 UI1 . . . E 3 24.244 14.073 31.686 1 15.41 ? N7 UI1 1001 A 1 HETATM 8 C C8 UI1 . . . E 3 24.516 14.993 32.592 1 10.89 ? C8 UI1 1001 A 1 HETATM 9 O O9 UI1 . . . E 3 25.653 15.15 33.021 1 19.63 ? O9 UI1 1001 A 1 HETATM 10 C C10 UI1 . . . E 3 23.418 15.911 33.026 1 12.18 ? C10 UI1 1001 A 1 HETATM 11 C C11 UI1 . . . E 3 23.763 16.969 33.898 1 9.62 ? C11 UI1 1001 A 1 HETATM 12 C C12 UI1 . . . E 3 22.818 17.896 34.274 1 8.27 ? C12 UI1 1001 A 1 HETATM 13 N N13 UI1 . . . E 3 23.218 18.997 35.111 1 6.92 ? N13 UI1 1001 A 1 HETATM 14 C C14 UI1 . . . E 3 23.72 18.839 36.429 1 7.12 ? C14 UI1 1001 A 1 HETATM 15 N N15 UI1 . . . E 3 24.154 19.942 37.085 1 9.02 ? N15 UI1 1001 A 1 HETATM 16 C C16 UI1 . . . E 3 24.625 19.855 38.349 1 4.99 ? C16 UI1 1001 A 1 HETATM 17 C C17 UI1 . . . E 3 24.658 18.602 38.998 1 4 ? C17 UI1 1001 A 1 HETATM 18 C C18 UI1 . . . E 3 24.206 17.48 38.288 1 5.43 ? C18 UI1 1001 A 1 HETATM 19 N N19 UI1 . . . E 3 23.747 17.625 37.022 1 9.13 ? N19 UI1 1001 A 1 HETATM 20 C C20 UI1 . . . E 3 21.473 17.783 33.783 1 9.71 ? C20 UI1 1001 A 1 HETATM 21 C C21 UI1 . . . E 3 20.515 18.755 34.16 1 9.28 ? C21 UI1 1001 A 1 HETATM 22 C C22 UI1 . . . E 3 19.186 18.662 33.693 1 4.6 ? C22 UI1 1001 A 1 HETATM 23 C C23 UI1 . . . E 3 18.801 17.598 32.854 1 2 ? C23 UI1 1001 A 1 HETATM 24 C C24 UI1 . . . E 3 19.756 16.625 32.469 1 5.6 ? C24 UI1 1001 A 1 HETATM 25 C C25 UI1 . . . E 3 21.101 16.722 32.931 1 6.43 ? C25 UI1 1001 A 1 HETATM 26 C C26 UI1 . . . E 3 22.077 15.777 32.541 1 9.03 ? C26 UI1 1001 A 1 HETATM 27 C C27 UI1 . . . E 3 18.238 19.715 34.126 1 2 ? C27 UI1 1001 A 1 HETATM 28 N N28 UI1 . . . E 3 18.656 20.693 34.879 1 2 ? N28 UI1 1001 A 1 HETATM 29 N N29 UI1 . . . E 3 16.965 19.677 33.756 1 2 ? N29 UI1 1001 A 1 HETATM 30 C C30 UI1 . . . E 3 25.958 12.198 31.728 1 10.89 ? C30 UI1 1001 A 1 HETATM 31 C C31 UI1 . . . E 3 26.959 11.488 30.991 1 13.91 ? C31 UI1 1001 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 31 #