data_1SQK
#
_model_server_result.job_id            bfWzD_Tku9xfZhmjumNcaw 
_model_server_result.datetime_utc      '2024-10-12 17:25:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1sqk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":378}' 
#
_entry.id    1SQK 
#
_exptl.entry_id    1SQK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              421.55 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'LATRUNCULIN A' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1SQK 
_cell.length_a            67.494 
_cell.length_b            75.198 
_cell.length_c            85.314 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1SQK 
_symmetry.cell_setting             orthorhombic 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C MG MG . A MG 376 1_555 D O3B ADP . A ADP 377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? 
metalc ? metalc2 C MG MG . A MG 376 1_555 F O HOH . A HOH 459 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? 
metalc ? metalc3 C MG MG . A MG 376 1_555 F O HOH . A HOH 460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
metalc ? metalc4 C MG MG . A MG 376 1_555 F O HOH . A HOH 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? 
metalc ? metalc5 C MG MG . A MG 376 1_555 F O HOH . A HOH 463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? 
metalc ? metalc6 C MG MG . A MG 376 1_555 F O HOH . A HOH 464 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
#
_chem_comp.formula           'C22 H31 N O5 S' 
_chem_comp.formula_weight    421.55 
_chem_comp.id                LAR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'LATRUNCULIN A' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     4-(17-HYDROXY-5,12-DIMETHYL-3-OXO-2,16-DIOXABICYCLO[13.3.1]NONADECA-4,8,10-TRIEN-17-YL)-2-THIAZOLIDINONE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S1 C19 LAR sing 217 n n 
S1 C20 LAR sing 218 n n 
N1 C18 LAR sing 219 n n 
N1 C20 LAR sing 220 n n 
N1 HN1 LAR sing 221 n n 
O1 C1 LAR doub 222 n n 
O2 C1 LAR sing 223 n n 
O2 C15 LAR sing 224 n n 
O3 C13 LAR sing 225 n n 
O3 C17 LAR sing 226 n n 
O4 C17 LAR sing 227 n n 
O4 HO4 LAR sing 228 n n 
O5 C20 LAR doub 229 n n 
C1 C2 LAR sing 230 n n 
C2 C3 LAR doub 231 z n 
C2 H21 LAR sing 232 n n 
C3 C4 LAR sing 233 n n 
C3 C21 LAR sing 234 n n 
C4 C5 LAR sing 235 n n 
C4 H41 LAR sing 236 n n 
C4 H42 LAR sing 237 n n 
C5 C6 LAR sing 238 n n 
C5 H51 LAR sing 239 n n 
C5 H52 LAR sing 240 n n 
C6 C7 LAR doub 241 e n 
C6 H61 LAR sing 242 n n 
C7 C8 LAR sing 243 n n 
C7 H71 LAR sing 244 n n 
C8 C9 LAR doub 245 z n 
C8 H81 LAR sing 246 n n 
C9 C10 LAR sing 247 n n 
C9 H91 LAR sing 248 n n 
C10 C11 LAR sing 249 n n 
C10 C22 LAR sing 250 n n 
C10 H101 LAR sing 251 n n 
C11 C12 LAR sing 252 n n 
C11 H111 LAR sing 253 n n 
C11 H112 LAR sing 254 n n 
C12 C13 LAR sing 255 n n 
C12 H121 LAR sing 256 n n 
C12 H122 LAR sing 257 n n 
C13 C14 LAR sing 258 n n 
C13 H131 LAR sing 259 n n 
C14 C15 LAR sing 260 n n 
C14 H141 LAR sing 261 n n 
C14 H142 LAR sing 262 n n 
C15 C16 LAR sing 263 n n 
C15 H151 LAR sing 264 n n 
C16 C17 LAR sing 265 n n 
C16 H161 LAR sing 266 n n 
C16 H162 LAR sing 267 n n 
C17 C18 LAR sing 268 n n 
C18 C19 LAR sing 269 n n 
C18 H181 LAR sing 270 n n 
C19 H191 LAR sing 271 n n 
C19 H192 LAR sing 272 n n 
C21 H211 LAR sing 273 n n 
C21 H212 LAR sing 274 n n 
C21 H213 LAR sing 275 n n 
C22 H221 LAR sing 276 n n 
C22 H222 LAR sing 277 n n 
C22 H223 LAR sing 278 n n 
#
_atom_sites.entry_id                     1SQK 
_atom_sites.fract_transf_matrix[1][1]    0.014816 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013298 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011721 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 MG A 1 376 3 MG MG . 
D 4 ADP A 1 377 1 ADP ADP . 
E 5 LAR A 1 378 2 LAR LAR . 
F 6 HOH A 1 379 4 HOH HOH . 
F 6 HOH A 2 380 5 HOH HOH . 
F 6 HOH A 3 381 6 HOH HOH . 
F 6 HOH A 4 382 7 HOH HOH . 
F 6 HOH A 5 383 8 HOH HOH . 
F 6 HOH A 6 384 10 HOH HOH . 
F 6 HOH A 7 385 11 HOH HOH . 
F 6 HOH A 8 386 12 HOH HOH . 
F 6 HOH A 9 387 13 HOH HOH . 
F 6 HOH A 10 388 14 HOH HOH . 
F 6 HOH A 11 389 15 HOH HOH . 
F 6 HOH A 12 390 17 HOH HOH . 
F 6 HOH A 13 391 18 HOH HOH . 
F 6 HOH A 14 392 19 HOH HOH . 
F 6 HOH A 15 393 20 HOH HOH . 
F 6 HOH A 16 394 21 HOH HOH . 
F 6 HOH A 17 395 22 HOH HOH . 
F 6 HOH A 18 396 23 HOH HOH . 
F 6 HOH A 19 397 24 HOH HOH . 
F 6 HOH A 20 398 25 HOH HOH . 
F 6 HOH A 21 399 26 HOH HOH . 
F 6 HOH A 22 400 27 HOH HOH . 
F 6 HOH A 23 401 28 HOH HOH . 
F 6 HOH A 24 402 29 HOH HOH . 
F 6 HOH A 25 403 30 HOH HOH . 
F 6 HOH A 26 404 31 HOH HOH . 
F 6 HOH A 27 405 32 HOH HOH . 
F 6 HOH A 28 406 33 HOH HOH . 
F 6 HOH A 29 407 34 HOH HOH . 
F 6 HOH A 30 408 35 HOH HOH . 
F 6 HOH A 31 409 36 HOH HOH . 
F 6 HOH A 32 410 37 HOH HOH . 
F 6 HOH A 33 411 38 HOH HOH . 
F 6 HOH A 34 412 39 HOH HOH . 
F 6 HOH A 35 413 40 HOH HOH . 
F 6 HOH A 36 414 41 HOH HOH . 
F 6 HOH A 37 415 42 HOH HOH . 
F 6 HOH A 38 416 43 HOH HOH . 
F 6 HOH A 39 417 44 HOH HOH . 
F 6 HOH A 40 418 45 HOH HOH . 
F 6 HOH A 41 419 46 HOH HOH . 
F 6 HOH A 42 420 47 HOH HOH . 
F 6 HOH A 43 421 48 HOH HOH . 
F 6 HOH A 44 422 49 HOH HOH . 
F 6 HOH A 45 423 50 HOH HOH . 
F 6 HOH A 46 424 51 HOH HOH . 
F 6 HOH A 47 425 52 HOH HOH . 
F 6 HOH A 48 426 53 HOH HOH . 
F 6 HOH A 49 427 54 HOH HOH . 
F 6 HOH A 50 428 55 HOH HOH . 
F 6 HOH A 51 429 56 HOH HOH . 
F 6 HOH A 52 430 57 HOH HOH . 
F 6 HOH A 53 431 58 HOH HOH . 
F 6 HOH A 54 432 59 HOH HOH . 
F 6 HOH A 55 433 60 HOH HOH . 
F 6 HOH A 56 434 61 HOH HOH . 
F 6 HOH A 57 435 62 HOH HOH . 
F 6 HOH A 58 436 63 HOH HOH . 
F 6 HOH A 59 437 64 HOH HOH . 
F 6 HOH A 60 438 65 HOH HOH . 
F 6 HOH A 61 439 66 HOH HOH . 
F 6 HOH A 62 440 67 HOH HOH . 
F 6 HOH A 63 441 68 HOH HOH . 
F 6 HOH A 64 442 69 HOH HOH . 
F 6 HOH A 65 443 70 HOH HOH . 
F 6 HOH A 66 444 71 HOH HOH . 
F 6 HOH A 67 445 72 HOH HOH . 
F 6 HOH A 68 446 73 HOH HOH . 
F 6 HOH A 69 447 74 HOH HOH . 
F 6 HOH A 70 448 75 HOH HOH . 
F 6 HOH A 71 449 76 HOH HOH . 
F 6 HOH A 72 450 77 HOH HOH . 
F 6 HOH A 73 451 78 HOH HOH . 
F 6 HOH A 74 452 79 HOH HOH . 
F 6 HOH A 75 453 80 HOH HOH . 
F 6 HOH A 76 454 81 HOH HOH . 
F 6 HOH A 77 455 82 HOH HOH . 
F 6 HOH A 78 456 83 HOH HOH . 
F 6 HOH A 79 457 84 HOH HOH . 
F 6 HOH A 80 458 85 HOH HOH . 
F 6 HOH A 81 459 86 HOH HOH . 
F 6 HOH A 82 460 87 HOH HOH . 
F 6 HOH A 83 461 88 HOH HOH . 
F 6 HOH A 84 462 89 HOH HOH . 
F 6 HOH A 85 463 90 HOH HOH . 
F 6 HOH A 86 464 91 HOH HOH . 
F 6 HOH A 87 465 92 HOH HOH . 
F 6 HOH A 88 466 93 HOH HOH . 
F 6 HOH A 89 467 94 HOH HOH . 
F 6 HOH A 90 468 95 HOH HOH . 
G 6 HOH B 1 35 9 HOH HOH . 
G 6 HOH B 2 36 16 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S1 LAR . . . E 5 18.391 13.86 19.276 1 33.71 ? S1 LAR 378 A 1 
HETATM 2 N N1 LAR . . . E 5 18.304 11.924 20.924 1 34.26 ? N1 LAR 378 A 1 
HETATM 3 O O1 LAR . . . E 5 20.284 11.591 25.35 1 30.15 ? O1 LAR 378 A 1 
HETATM 4 O O2 LAR . . . E 5 22.18 11.245 24.067 1 28.71 ? O2 LAR 378 A 1 
HETATM 5 O O3 LAR . . . E 5 21.749 10.803 20.336 1 33.88 ? O3 LAR 378 A 1 
HETATM 6 O O4 LAR . . . E 5 21.096 12.768 21.426 1 33.88 ? O4 LAR 378 A 1 
HETATM 7 O O5 LAR . . . E 5 16.681 13.508 21.261 1 34.05 ? O5 LAR 378 A 1 
HETATM 8 C C1 LAR . . . E 5 21.476 11.847 25.094 1 30.31 ? C1 LAR 378 A 1 
HETATM 9 C C2 LAR . . . E 5 22.294 12.799 25.882 1 29.71 ? C2 LAR 378 A 1 
HETATM 10 C C3 LAR . . . E 5 23.401 13.534 25.666 1 31.41 ? C3 LAR 378 A 1 
HETATM 11 C C4 LAR . . . E 5 24.206 13.564 24.312 1 32.53 ? C4 LAR 378 A 1 
HETATM 12 C C5 LAR . . . E 5 25.628 13.16 24.571 1 34.08 ? C5 LAR 378 A 1 
HETATM 13 C C6 LAR . . . E 5 26.372 12.635 23.382 1 35.3 ? C6 LAR 378 A 1 
HETATM 14 C C7 LAR . . . E 5 26.026 12.444 22.101 1 35.09 ? C7 LAR 378 A 1 
HETATM 15 C C8 LAR . . . E 5 26.945 11.906 21.138 1 33.83 ? C8 LAR 378 A 1 
HETATM 16 C C9 LAR . . . E 5 26.612 11.692 19.827 1 33.83 ? C9 LAR 378 A 1 
HETATM 17 C C10 LAR . . . E 5 25.252 11.991 19.209 1 33.78 ? C10 LAR 378 A 1 
HETATM 18 C C11 LAR . . . E 5 24.374 10.763 19.002 1 32.38 ? C11 LAR 378 A 1 
HETATM 19 C C12 LAR . . . E 5 24.039 9.968 20.244 1 31.92 ? C12 LAR 378 A 1 
HETATM 20 C C13 LAR . . . E 5 22.986 10.579 21.142 1 32.51 ? C13 LAR 378 A 1 
HETATM 21 C C14 LAR . . . E 5 22.656 9.646 22.307 1 31.75 ? C14 LAR 378 A 1 
HETATM 22 C C15 LAR . . . E 5 21.539 10.209 23.187 1 30.87 ? C15 LAR 378 A 1 
HETATM 23 C C16 LAR . . . E 5 20.336 10.73 22.39 1 31.72 ? C16 LAR 378 A 1 
HETATM 24 C C17 LAR . . . E 5 20.684 11.43 21.068 1 33.72 ? C17 LAR 378 A 1 
HETATM 25 C C18 LAR . . . E 5 19.512 11.516 20.096 1 33.55 ? C18 LAR 378 A 1 
HETATM 26 C C19 LAR . . . E 5 19.653 12.548 18.994 1 33.81 ? C19 LAR 378 A 1 
HETATM 27 C C20 LAR . . . E 5 17.637 13.035 20.688 1 34.15 ? C20 LAR 378 A 1 
HETATM 28 C C21 LAR . . . E 5 23.898 14.411 26.852 1 28.49 ? C21 LAR 378 A 1 
HETATM 29 C C22 LAR . . . E 5 25.513 12.78 17.831 1 32.09 ? C22 LAR 378 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           258 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           29 
#