data_1SQO # _model_server_result.job_id Xlsl5NaMqKPOEkoMz7hz9Q _model_server_result.datetime_utc '2024-10-15 17:17:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1sqo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1001}' # _entry.id 1SQO # _exptl.entry_id 1SQO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 263.297 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 8-(PYRIMIDIN-2-YLAMINO)NAPHTHALENE-2-CARBOXIMIDAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1SQO _cell.length_a 55.16 _cell.length_b 53 _cell.length_c 82.3 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SQO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 31 A CYS 34 1_555 A SG CYS 47 A CYS 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? disulf ? disulf2 A SG CYS 39 A CYS 46 1_555 A SG CYS 110 A CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? disulf ? disulf3 A SG CYS 135 A CYS 147 1_555 A SG CYS 204 A CYS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? disulf ? disulf4 A SG CYS 167 A CYS 180 1_555 A SG CYS 183 A CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? disulf ? disulf5 A SG CYS 194 A CYS 207 1_555 A SG CYS 222 A CYS 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? # _chem_comp.formula 'C15 H13 N5' _chem_comp.formula_weight 263.297 _chem_comp.id UI2 _chem_comp.mon_nstd_flag . _chem_comp.name 8-(PYRIMIDIN-2-YLAMINO)NAPHTHALENE-2-CARBOXIMIDAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1SQO _atom_sites.fract_transf_matrix[1][1] 0.018129 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018868 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012151 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 301 301 SO4 SO4 . C 2 SO4 A 1 302 302 SO4 SO4 . D 2 SO4 A 1 303 303 SO4 SO4 . E 3 UI2 A 1 1001 1 UI2 LIG . F 4 HOH A 1 1002 1 HOH HOH . F 4 HOH A 2 1003 2 HOH HOH . F 4 HOH A 3 1004 3 HOH HOH . F 4 HOH A 4 1005 4 HOH HOH . F 4 HOH A 5 1006 5 HOH HOH . F 4 HOH A 6 1007 6 HOH HOH . F 4 HOH A 7 1008 7 HOH HOH . F 4 HOH A 8 1009 8 HOH HOH . F 4 HOH A 9 1010 9 HOH HOH . F 4 HOH A 10 1011 10 HOH HOH . F 4 HOH A 11 1012 11 HOH HOH . F 4 HOH A 12 1013 12 HOH HOH . F 4 HOH A 13 1014 13 HOH HOH . F 4 HOH A 14 1015 14 HOH HOH . F 4 HOH A 15 1016 15 HOH HOH . F 4 HOH A 16 1017 16 HOH HOH . F 4 HOH A 17 1018 17 HOH HOH . F 4 HOH A 18 1019 18 HOH HOH . F 4 HOH A 19 1020 19 HOH HOH . F 4 HOH A 20 1021 20 HOH HOH . F 4 HOH A 21 1022 21 HOH HOH . F 4 HOH A 22 1023 22 HOH HOH . F 4 HOH A 23 1024 23 HOH HOH . F 4 HOH A 24 1025 24 HOH HOH . F 4 HOH A 25 1026 25 HOH HOH . F 4 HOH A 26 1027 26 HOH HOH . F 4 HOH A 27 1028 27 HOH HOH . F 4 HOH A 28 1029 28 HOH HOH . F 4 HOH A 29 1030 29 HOH HOH . F 4 HOH A 30 1031 30 HOH HOH . F 4 HOH A 31 1032 31 HOH HOH . F 4 HOH A 32 1033 32 HOH HOH . F 4 HOH A 33 1034 33 HOH HOH . F 4 HOH A 34 1035 34 HOH HOH . F 4 HOH A 35 1036 35 HOH HOH . F 4 HOH A 36 1037 36 HOH HOH . F 4 HOH A 37 1038 37 HOH HOH . F 4 HOH A 38 1039 38 HOH HOH . F 4 HOH A 39 1040 39 HOH HOH . F 4 HOH A 40 1041 40 HOH HOH . F 4 HOH A 41 1042 41 HOH HOH . F 4 HOH A 42 1043 42 HOH HOH . F 4 HOH A 43 1044 43 HOH HOH . F 4 HOH A 44 1045 44 HOH HOH . F 4 HOH A 45 1046 45 HOH HOH . F 4 HOH A 46 1047 46 HOH HOH . F 4 HOH A 47 1048 47 HOH HOH . F 4 HOH A 48 1049 48 HOH HOH . F 4 HOH A 49 1050 49 HOH HOH . F 4 HOH A 50 1051 50 HOH HOH . F 4 HOH A 51 1052 51 HOH HOH . F 4 HOH A 52 1053 52 HOH HOH . F 4 HOH A 53 1054 53 HOH HOH . F 4 HOH A 54 1055 54 HOH HOH . F 4 HOH A 55 1056 55 HOH HOH . F 4 HOH A 56 1057 56 HOH HOH . F 4 HOH A 57 1058 57 HOH HOH . F 4 HOH A 58 1059 58 HOH HOH . F 4 HOH A 59 1060 59 HOH HOH . F 4 HOH A 60 1061 60 HOH HOH . F 4 HOH A 61 1062 61 HOH HOH . F 4 HOH A 62 1063 62 HOH HOH . F 4 HOH A 63 1064 63 HOH HOH . F 4 HOH A 64 1065 64 HOH HOH . F 4 HOH A 65 1066 65 HOH HOH . F 4 HOH A 66 1067 66 HOH HOH . F 4 HOH A 67 1068 67 HOH HOH . F 4 HOH A 68 1069 68 HOH HOH . F 4 HOH A 69 1070 69 HOH HOH . F 4 HOH A 70 1071 70 HOH HOH . F 4 HOH A 71 1072 71 HOH HOH . F 4 HOH A 72 1073 72 HOH HOH . F 4 HOH A 73 1074 73 HOH HOH . F 4 HOH A 74 1075 74 HOH HOH . F 4 HOH A 75 1076 75 HOH HOH . F 4 HOH A 76 1077 76 HOH HOH . F 4 HOH A 77 1078 77 HOH HOH . F 4 HOH A 78 1079 78 HOH HOH . F 4 HOH A 79 1080 79 HOH HOH . F 4 HOH A 80 1081 80 HOH HOH . F 4 HOH A 81 1082 81 HOH HOH . F 4 HOH A 82 1083 82 HOH HOH . F 4 HOH A 83 1084 83 HOH HOH . F 4 HOH A 84 1085 84 HOH HOH . F 4 HOH A 85 1086 85 HOH HOH . F 4 HOH A 86 1087 86 HOH HOH . F 4 HOH A 87 1088 87 HOH HOH . F 4 HOH A 88 1089 88 HOH HOH . F 4 HOH A 89 1090 89 HOH HOH . F 4 HOH A 90 1091 90 HOH HOH . F 4 HOH A 91 1092 91 HOH HOH . F 4 HOH A 92 1093 92 HOH HOH . F 4 HOH A 93 1094 93 HOH HOH . F 4 HOH A 94 1095 94 HOH HOH . F 4 HOH A 95 1096 95 HOH HOH . F 4 HOH A 96 1097 96 HOH HOH . F 4 HOH A 97 1098 97 HOH HOH . F 4 HOH A 98 1099 98 HOH HOH . F 4 HOH A 99 1100 99 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 UI2 . . . E 3 22.848 15.604 33.486 1 6.45 ? C1 UI2 1001 A 1 HETATM 2 C C2 UI2 . . . E 3 21.563 15.615 32.925 1 10.66 ? C2 UI2 1001 A 1 HETATM 3 C C3 UI2 . . . E 3 20.683 16.743 33.131 1 8.86 ? C3 UI2 1001 A 1 HETATM 4 C C4 UI2 . . . E 3 21.183 17.831 33.92 1 9.49 ? C4 UI2 1001 A 1 HETATM 5 C C5 UI2 . . . E 3 22.484 17.86 34.472 1 6.53 ? C5 UI2 1001 A 1 HETATM 6 C C6 UI2 . . . E 3 23.314 16.72 34.258 1 8.5 ? C6 UI2 1001 A 1 HETATM 7 C C10 UI2 . . . E 3 19.395 16.702 32.592 1 6.55 ? C10 UI2 1001 A 1 HETATM 8 C C11 UI2 . . . E 3 18.519 17.766 32.944 1 6.37 ? C11 UI2 1001 A 1 HETATM 9 C C12 UI2 . . . E 3 18.939 18.849 33.778 1 6.63 ? C12 UI2 1001 A 1 HETATM 10 C C13 UI2 . . . E 3 20.251 18.926 34.232 1 9.54 ? C13 UI2 1001 A 1 HETATM 11 N N17 UI2 . . . E 3 23.023 18.979 35.199 1 6.48 ? N17 UI2 1001 A 1 HETATM 12 C C18 UI2 . . . E 3 23.573 18.935 36.477 1 10.79 ? C18 UI2 1001 A 1 HETATM 13 N N19 UI2 . . . E 3 23.542 17.827 37.284 1 9.58 ? N19 UI2 1001 A 1 HETATM 14 C C20 UI2 . . . E 3 24.018 17.762 38.555 1 8.43 ? C20 UI2 1001 A 1 HETATM 15 C C21 UI2 . . . E 3 24.623 18.926 39.179 1 6.02 ? C21 UI2 1001 A 1 HETATM 16 C C22 UI2 . . . E 3 24.565 20.06 38.27 1 7.19 ? C22 UI2 1001 A 1 HETATM 17 N N23 UI2 . . . E 3 24.123 20.087 37.04 1 7.07 ? N23 UI2 1001 A 1 HETATM 18 C C28 UI2 . . . E 3 18.109 19.891 34.19 1 3.38 ? C28 UI2 1001 A 1 HETATM 19 N N29 UI2 . . . E 3 16.803 19.779 34.16 1 4.7 ? N29 UI2 1001 A 1 HETATM 20 N N30 UI2 . . . E 3 18.543 21.09 34.651 1 4.69 ? N30 UI2 1001 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #