data_1SR5 # _model_server_result.job_id yYqG3IM7XnpFFthYrMPeTQ _model_server_result.datetime_utc '2024-10-18 15:31:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1sr5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":503}' # _entry.id 1SR5 # _exptl.entry_id 1SR5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1SR5 _cell.length_a 90.04 _cell.length_b 90.7 _cell.length_c 159.9 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SR5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 2 1 U9J YYB C1 O1 . O4 H4O . sing 2 ? 4 3 2 GU6 U9J C1 O1 . O4 H6 . sing 3 ? 4 4 3 U9M GU6 C1 O1 . O4 HO4 . sing 4 ? 4 5 4 U9G U9M C1 O1 . O4 HO4 . sing 5 ? 4 6 5 GU8 U9G C1 O1 . O4 HO4 . sing 6 ? 4 7 6 U9D GU8 C1 H1C . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D YYB 1 D 1 YYB ? 601 NT1 4 n D U9J 2 D 2 U9J ? 601 NT1 4 n D GU6 3 D 3 GU6 ? 601 NT1 4 n D U9M 4 D 4 U9M ? 601 NT1 4 n D U9G 5 D 5 U9G ? 601 NT1 4 n D GU8 6 D 6 GU8 ? 601 NT1 4 n D U9D 7 D 7 U9D ? 601 NT1 # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 8 A CYS 8 1_555 A SG CYS 128 A CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? disulf ? disulf2 A SG CYS 21 A CYS 21 1_555 A SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 A SG CYS 247 A CYS 247 1_555 A SG CYS 430 A CYS 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 B SG CYS 9 B CYS 1 1_555 C SG CYS 119 C CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf5 C SG CYS 28 C CYS 42 1_555 C SG CYS 44 C CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf6 C SG CYS 173 C CYS 168 1_555 C SG CYS 187 C CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf7 C SG CYS 201 C CYS 191 1_555 C SG CYS 231 C CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? covale ? covale1 A ND2 ASN 135 A ASN 135 1_555 E C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? covale ? covale2 D O4 YYB . D YYB 1 1_555 D C1 U9J . D U9J 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 sing covale ? covale3 D O4 U9J . D U9J 2 1_555 D C1 GU6 . D GU6 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.474 sing covale ? covale4 D O4 GU6 . D GU6 3 1_555 D C1 U9M . D U9M 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.385 sing covale ? covale5 D O4 U9M . D U9M 4 1_555 D C1 U9G . D U9G 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.488 sing covale ? covale6 D O4 U9G . D U9G 5 1_555 D C1 GU8 . D GU8 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.415 sing covale ? covale7 D O4 GU8 . D GU8 6 1_555 D C1 U9D . D U9D 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.533 sing # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 346 n n C1 O1 NAG sing 347 n n C1 O5 NAG sing 348 n n C1 H1 NAG sing 349 n n C2 C3 NAG sing 350 n n C2 N2 NAG sing 351 n n C2 H2 NAG sing 352 n n C3 C4 NAG sing 353 n n C3 O3 NAG sing 354 n n C3 H3 NAG sing 355 n n C4 C5 NAG sing 356 n n C4 O4 NAG sing 357 n n C4 H4 NAG sing 358 n n C5 C6 NAG sing 359 n n C5 O5 NAG sing 360 n n C5 H5 NAG sing 361 n n C6 O6 NAG sing 362 n n C6 H61 NAG sing 363 n n C6 H62 NAG sing 364 n n C7 C8 NAG sing 365 n n C7 N2 NAG sing 366 n n C7 O7 NAG doub 367 n n C8 H81 NAG sing 368 n n C8 H82 NAG sing 369 n n C8 H83 NAG sing 370 n n N2 HN2 NAG sing 371 n n O1 HO1 NAG sing 372 n n O3 HO3 NAG sing 373 n n O4 HO4 NAG sing 374 n n O6 HO6 NAG sing 375 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1SR5 _atom_sites.fract_transf_matrix[1][1] 0.011106 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011025 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006254 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NAG A 1 501 501 NAG NAG . F 5 NAG A 1 502 502 NAG NAG . G 5 NAG C 1 503 503 NAG NAG . H 6 GU4 C 1 602 602 GU4 NT2 . I 7 HOH A 1 602 3 HOH HOH . I 7 HOH A 2 603 4 HOH HOH . I 7 HOH A 3 604 7 HOH HOH . I 7 HOH A 4 605 8 HOH HOH . I 7 HOH A 5 606 11 HOH HOH . I 7 HOH A 6 607 12 HOH HOH . I 7 HOH A 7 608 17 HOH HOH . I 7 HOH A 8 609 21 HOH HOH . I 7 HOH A 9 610 24 HOH HOH . I 7 HOH A 10 611 26 HOH HOH . I 7 HOH A 11 612 27 HOH HOH . I 7 HOH A 12 613 28 HOH HOH . I 7 HOH A 13 614 30 HOH HOH . I 7 HOH A 14 615 32 HOH HOH . I 7 HOH A 15 616 33 HOH HOH . I 7 HOH A 16 617 34 HOH HOH . I 7 HOH A 17 618 36 HOH HOH . I 7 HOH A 18 619 37 HOH HOH . I 7 HOH A 19 620 38 HOH HOH . I 7 HOH A 20 621 39 HOH HOH . I 7 HOH A 21 622 40 HOH HOH . I 7 HOH A 22 623 43 HOH HOH . I 7 HOH A 23 624 45 HOH HOH . I 7 HOH A 24 625 51 HOH HOH . I 7 HOH A 25 626 52 HOH HOH . I 7 HOH A 26 627 53 HOH HOH . I 7 HOH A 27 628 54 HOH HOH . I 7 HOH A 28 629 56 HOH HOH . I 7 HOH A 29 630 58 HOH HOH . I 7 HOH A 30 631 60 HOH HOH . I 7 HOH A 31 632 63 HOH HOH . I 7 HOH A 32 633 66 HOH HOH . I 7 HOH A 33 634 67 HOH HOH . I 7 HOH A 34 635 70 HOH HOH . I 7 HOH A 35 636 72 HOH HOH . I 7 HOH A 36 637 74 HOH HOH . I 7 HOH A 37 638 76 HOH HOH . J 7 HOH B 1 18 5 HOH HOH . J 7 HOH B 2 19 18 HOH HOH . J 7 HOH B 3 20 31 HOH HOH . J 7 HOH B 4 21 61 HOH HOH . K 7 HOH C 1 603 1 HOH HOH . K 7 HOH C 2 604 2 HOH HOH . K 7 HOH C 3 605 6 HOH HOH . K 7 HOH C 4 606 9 HOH HOH . K 7 HOH C 5 607 10 HOH HOH . K 7 HOH C 6 608 13 HOH HOH . K 7 HOH C 7 609 14 HOH HOH . K 7 HOH C 8 610 15 HOH HOH . K 7 HOH C 9 611 16 HOH HOH . K 7 HOH C 10 612 19 HOH HOH . K 7 HOH C 11 613 20 HOH HOH . K 7 HOH C 12 614 22 HOH HOH . K 7 HOH C 13 615 23 HOH HOH . K 7 HOH C 14 616 25 HOH HOH . K 7 HOH C 15 617 29 HOH HOH . K 7 HOH C 16 618 35 HOH HOH . K 7 HOH C 17 619 41 HOH HOH . K 7 HOH C 18 620 42 HOH HOH . K 7 HOH C 19 621 44 HOH HOH . K 7 HOH C 20 622 46 HOH HOH . K 7 HOH C 21 623 47 HOH HOH . K 7 HOH C 22 624 48 HOH HOH . K 7 HOH C 23 625 49 HOH HOH . K 7 HOH C 24 626 50 HOH HOH . K 7 HOH C 25 627 55 HOH HOH . K 7 HOH C 26 628 57 HOH HOH . K 7 HOH C 27 629 62 HOH HOH . K 7 HOH C 28 630 64 HOH HOH . K 7 HOH C 29 631 65 HOH HOH . K 7 HOH C 30 632 68 HOH HOH . K 7 HOH C 31 633 69 HOH HOH . K 7 HOH C 32 634 71 HOH HOH . K 7 HOH C 33 635 73 HOH HOH . K 7 HOH C 34 636 75 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . G 5 63.474 -16.969 27.88 1 104 ? C1 NAG 503 C 1 HETATM 2 C C2 NAG . . . G 5 63.185 -15.804 28.895 1 104.29 ? C2 NAG 503 C 1 HETATM 3 C C3 NAG . . . G 5 64.566 -15.454 29.626 1 104.99 ? C3 NAG 503 C 1 HETATM 4 C C4 NAG . . . G 5 65.215 -16.684 30.434 1 105.31 ? C4 NAG 503 C 1 HETATM 5 C C5 NAG . . . G 5 65.141 -18.061 29.548 1 105.11 ? C5 NAG 503 C 1 HETATM 6 C C6 NAG . . . G 5 65.201 -19.411 30.342 1 104.92 ? C6 NAG 503 C 1 HETATM 7 C C7 NAG . . . G 5 61.404 -14.209 27.954 1 102.42 ? C7 NAG 503 C 1 HETATM 8 C C8 NAG . . . G 5 60.182 -15.025 28.462 1 101.31 ? C8 NAG 503 C 1 HETATM 9 N N2 NAG . . . G 5 62.713 -14.599 28.173 1 103.19 ? N2 NAG 503 C 1 HETATM 10 O O3 NAG . . . G 5 64.337 -14.376 30.571 1 105.2 ? O3 NAG 503 C 1 HETATM 11 O O4 NAG . . . G 5 66.609 -16.288 30.696 1 104.98 ? O4 NAG 503 C 1 HETATM 12 O O5 NAG . . . G 5 63.885 -18.085 28.751 1 104.46 ? O5 NAG 503 C 1 HETATM 13 O O6 NAG . . . G 5 64.053 -20.277 30.089 1 104.2 ? O6 NAG 503 C 1 HETATM 14 O O7 NAG . . . G 5 61.147 -13.18 27.337 1 102.53 ? O7 NAG 503 C 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #