data_1SRI # _model_server_result.job_id S2n3B2ZvKfG_IsVEd6fI_Q _model_server_result.datetime_utc '2025-03-06 01:00:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1sri # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":300}' # _entry.id 1SRI # _exptl.entry_id 1SRI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 270.283 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2-((3',5'-DIMETHYL-4'-HYDROXYPHENYL)AZO)BENZOIC ACID" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1SRI _cell.length_a 95.6 _cell.length_b 106 _cell.length_c 47.9 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SRI _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PQS octameric 8 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1,2 A,B,C,D,E,F 2 1,3,4,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 95.6 0 0 4 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 95.6 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C15 H14 N2 O3' _chem_comp.formula_weight 270.283 _chem_comp.id DMB _chem_comp.mon_nstd_flag . _chem_comp.name "2-((3',5'-DIMETHYL-4'-HYDROXYPHENYL)AZO)BENZOIC ACID" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 DMB sing 70 n y C1 C6 DMB doub 71 n y C1 N1 DMB sing 72 n n C2 C3 DMB doub 73 n y C2 C DMB sing 74 n n C3 C4 DMB sing 75 n y C3 H3 DMB sing 76 n n C4 C5 DMB doub 77 n y C4 H4 DMB sing 78 n n C5 C6 DMB sing 79 n y C5 H5 DMB sing 80 n n C6 H6 DMB sing 81 n n C1' C2' DMB sing 82 n y C1' C6' DMB doub 83 n y C1' N1' DMB sing 84 n n C2' C3' DMB doub 85 n y C2' H2' DMB sing 86 n n C3' C4' DMB sing 87 n y C3' CM3 DMB sing 88 n n C4' C5' DMB doub 89 n y C4' O4' DMB sing 90 n n C5' C6' DMB sing 91 n y C5' CM5 DMB sing 92 n n C6' H6' DMB sing 93 n n C O DMB doub 94 n n C OXT DMB sing 95 n n CM3 HM31 DMB sing 96 n n CM3 HM32 DMB sing 97 n n CM3 HM33 DMB sing 98 n n CM5 HM51 DMB sing 99 n n CM5 HM52 DMB sing 100 n n CM5 HM53 DMB sing 101 n n N1 N1' DMB doub 102 n n OXT HXT DMB sing 103 n n O4' HO4' DMB sing 104 n n # _atom_sites.entry_id 1SRI _atom_sites.fract_transf_matrix[1][1] 0.01046 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009434 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020877 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DMB A 1 300 300 DMB DMB . D 2 DMB B 1 300 300 DMB DMB . E 3 HOH A 1 605 605 HOH HOH . E 3 HOH A 2 606 606 HOH HOH . E 3 HOH A 3 608 608 HOH HOH . E 3 HOH A 4 611 611 HOH HOH . E 3 HOH A 5 613 613 HOH HOH . E 3 HOH A 6 614 614 HOH HOH . E 3 HOH A 7 615 615 HOH HOH . E 3 HOH A 8 616 616 HOH HOH . E 3 HOH A 9 622 622 HOH HOH . E 3 HOH A 10 623 623 HOH HOH . E 3 HOH A 11 624 624 HOH HOH . E 3 HOH A 12 630 630 HOH HOH . E 3 HOH A 13 631 631 HOH HOH . E 3 HOH A 14 632 632 HOH HOH . E 3 HOH A 15 634 634 HOH HOH . E 3 HOH A 16 635 635 HOH HOH . E 3 HOH A 17 636 636 HOH HOH . E 3 HOH A 18 637 637 HOH HOH . E 3 HOH A 19 638 638 HOH HOH . E 3 HOH A 20 639 639 HOH HOH . E 3 HOH A 21 640 640 HOH HOH . E 3 HOH A 22 641 641 HOH HOH . E 3 HOH A 23 642 642 HOH HOH . E 3 HOH A 24 646 646 HOH HOH . E 3 HOH A 25 648 648 HOH HOH . E 3 HOH A 26 650 650 HOH HOH . E 3 HOH A 27 652 652 HOH HOH . E 3 HOH A 28 653 653 HOH HOH . E 3 HOH A 29 654 654 HOH HOH . E 3 HOH A 30 656 656 HOH HOH . E 3 HOH A 31 657 657 HOH HOH . E 3 HOH A 32 659 659 HOH HOH . E 3 HOH A 33 667 667 HOH HOH . E 3 HOH A 34 668 668 HOH HOH . E 3 HOH A 35 669 669 HOH HOH . E 3 HOH A 36 670 670 HOH HOH . E 3 HOH A 37 671 671 HOH HOH . E 3 HOH A 38 673 673 HOH HOH . E 3 HOH A 39 674 674 HOH HOH . E 3 HOH A 40 675 675 HOH HOH . E 3 HOH A 41 676 676 HOH HOH . E 3 HOH A 42 677 677 HOH HOH . E 3 HOH A 43 679 679 HOH HOH . E 3 HOH A 44 680 680 HOH HOH . E 3 HOH A 45 688 688 HOH HOH . E 3 HOH A 46 689 689 HOH HOH . E 3 HOH A 47 691 691 HOH HOH . E 3 HOH A 48 692 692 HOH HOH . E 3 HOH A 49 693 693 HOH HOH . E 3 HOH A 50 699 699 HOH HOH . E 3 HOH A 51 701 701 HOH HOH . E 3 HOH A 52 702 702 HOH HOH . E 3 HOH A 53 706 706 HOH HOH . E 3 HOH A 54 708 708 HOH HOH . E 3 HOH A 55 709 709 HOH HOH . E 3 HOH A 56 712 712 HOH HOH . E 3 HOH A 57 713 713 HOH HOH . E 3 HOH A 58 714 714 HOH HOH . E 3 HOH A 59 715 715 HOH HOH . E 3 HOH A 60 716 716 HOH HOH . E 3 HOH A 61 720 720 HOH HOH . E 3 HOH A 62 723 723 HOH HOH . E 3 HOH A 63 725 725 HOH HOH . E 3 HOH A 64 726 726 HOH HOH . E 3 HOH A 65 727 727 HOH HOH . E 3 HOH A 66 731 731 HOH HOH . E 3 HOH A 67 732 732 HOH HOH . E 3 HOH A 68 733 733 HOH HOH . E 3 HOH A 69 734 734 HOH HOH . F 3 HOH B 1 601 601 HOH HOH . F 3 HOH B 2 602 602 HOH HOH . F 3 HOH B 3 603 603 HOH HOH . F 3 HOH B 4 604 604 HOH HOH . F 3 HOH B 5 607 607 HOH HOH . F 3 HOH B 6 609 609 HOH HOH . F 3 HOH B 7 610 610 HOH HOH . F 3 HOH B 8 612 612 HOH HOH . F 3 HOH B 9 617 617 HOH HOH . F 3 HOH B 10 618 618 HOH HOH . F 3 HOH B 11 619 619 HOH HOH . F 3 HOH B 12 620 620 HOH HOH . F 3 HOH B 13 621 621 HOH HOH . F 3 HOH B 14 625 625 HOH HOH . F 3 HOH B 15 626 626 HOH HOH . F 3 HOH B 16 627 627 HOH HOH . F 3 HOH B 17 628 628 HOH HOH . F 3 HOH B 18 629 629 HOH HOH . F 3 HOH B 19 633 633 HOH HOH . F 3 HOH B 20 643 643 HOH HOH . F 3 HOH B 21 644 644 HOH HOH . F 3 HOH B 22 645 645 HOH HOH . F 3 HOH B 23 647 647 HOH HOH . F 3 HOH B 24 649 649 HOH HOH . F 3 HOH B 25 651 651 HOH HOH . F 3 HOH B 26 655 655 HOH HOH . F 3 HOH B 27 658 658 HOH HOH . F 3 HOH B 28 660 660 HOH HOH . F 3 HOH B 29 661 661 HOH HOH . F 3 HOH B 30 662 662 HOH HOH . F 3 HOH B 31 663 663 HOH HOH . F 3 HOH B 32 664 664 HOH HOH . F 3 HOH B 33 665 665 HOH HOH . F 3 HOH B 34 666 666 HOH HOH . F 3 HOH B 35 672 672 HOH HOH . F 3 HOH B 36 678 678 HOH HOH . F 3 HOH B 37 681 681 HOH HOH . F 3 HOH B 38 682 682 HOH HOH . F 3 HOH B 39 683 683 HOH HOH . F 3 HOH B 40 684 684 HOH HOH . F 3 HOH B 41 685 685 HOH HOH . F 3 HOH B 42 686 686 HOH HOH . F 3 HOH B 43 687 687 HOH HOH . F 3 HOH B 44 690 690 HOH HOH . F 3 HOH B 45 694 694 HOH HOH . F 3 HOH B 46 695 695 HOH HOH . F 3 HOH B 47 696 696 HOH HOH . F 3 HOH B 48 697 697 HOH HOH . F 3 HOH B 49 698 698 HOH HOH . F 3 HOH B 50 700 700 HOH HOH . F 3 HOH B 51 703 703 HOH HOH . F 3 HOH B 52 704 704 HOH HOH . F 3 HOH B 53 705 705 HOH HOH . F 3 HOH B 54 707 707 HOH HOH . F 3 HOH B 55 710 710 HOH HOH . F 3 HOH B 56 711 711 HOH HOH . F 3 HOH B 57 717 717 HOH HOH . F 3 HOH B 58 718 718 HOH HOH . F 3 HOH B 59 719 719 HOH HOH . F 3 HOH B 60 721 721 HOH HOH . F 3 HOH B 61 722 722 HOH HOH . F 3 HOH B 62 724 724 HOH HOH . F 3 HOH B 63 728 728 HOH HOH . F 3 HOH B 64 729 729 HOH HOH . F 3 HOH B 65 730 730 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DMB . . . C 2 18.739 4.756 11.985 1 32.12 ? C1 DMB 300 A 1 HETATM 2 C C2 DMB . . . C 2 17.519 5.137 11.453 1 31.38 ? C2 DMB 300 A 1 HETATM 3 C C3 DMB . . . C 2 17.273 5.036 10.061 1 31.48 ? C3 DMB 300 A 1 HETATM 4 C C4 DMB . . . C 2 18.283 4.546 9.238 1 31.68 ? C4 DMB 300 A 1 HETATM 5 C C5 DMB . . . C 2 19.511 4.159 9.782 1 31.7 ? C5 DMB 300 A 1 HETATM 6 C C6 DMB . . . C 2 19.749 4.257 11.142 1 31.84 ? C6 DMB 300 A 1 HETATM 7 C C1' DMB . . . C 2 20.589 4.084 15.077 1 34.7 ? C1' DMB 300 A 1 HETATM 8 C C2' DMB . . . C 2 20.228 4.862 16.181 1 34.99 ? C2' DMB 300 A 1 HETATM 9 C C3' DMB . . . C 2 21.134 5.044 17.236 1 34.96 ? C3' DMB 300 A 1 HETATM 10 C C4' DMB . . . C 2 22.396 4.456 17.177 1 35.06 ? C4' DMB 300 A 1 HETATM 11 C C5' DMB . . . C 2 22.764 3.666 16.085 1 34.99 ? C5' DMB 300 A 1 HETATM 12 C C6' DMB . . . C 2 21.852 3.478 15.038 1 35.01 ? C6' DMB 300 A 1 HETATM 13 C C DMB . . . C 2 16.398 5.747 12.303 1 30.69 ? C DMB 300 A 1 HETATM 14 C CM3 DMB . . . C 2 20.766 5.906 18.448 1 35.11 ? CM3 DMB 300 A 1 HETATM 15 C CM5 DMB . . . C 2 24.16 3.017 16.063 1 35.06 ? CM5 DMB 300 A 1 HETATM 16 N N1 DMB . . . C 2 18.998 4.846 13.447 1 32.55 ? N1 DMB 300 A 1 HETATM 17 N N1' DMB . . . C 2 19.63 3.887 13.975 1 34.14 ? N1' DMB 300 A 1 HETATM 18 O O DMB . . . C 2 15.326 6.31 11.534 1 28.18 ? O DMB 300 A 1 HETATM 19 O OXT DMB . . . C 2 16.408 5.877 13.491 1 30.64 ? OXT DMB 300 A 1 HETATM 20 O O4' DMB . . . C 2 23.319 4.655 18.253 1 35.46 ? O4' DMB 300 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 20 #